Merge branch 'master' of github.com:robsyme/nf-repeatmasking

Author: robsyme

README.md

@@ -36,10 +36,7 @@ cd `mktemp -d`
 wget --user $RB_USERNAME \
 	 --password $RB_PASSWORD \
 	 -O repeatmaskerlibraries.tar.gz \
-     http://www.girinst.org/server/RepBase/protected/repeatmaskerlibraries/repeatmaskerlibraries-20140131.tar.gz
-
-# Rename the tar.gz archive to 'repeatmaskerlibraries.tar.gz'
-mv repeatmaskerlibraries-20140131.tar.gz repeatmaskerlibraries.tar.gz
+     http://www.girinst.org/server/RepBase/protected/repeatmaskerlibraries/RepBaseRepeatMaskerEdition-20170127.tar.gz
 
 # Make an (almost) empty Dockerfile.
 #  All of the important instructions are in the repeatmasker-onbuild image

dockerfiles/nf-repeatmasking/Dockerfile

@@ -127,11 +127,11 @@ RUN apt-get install -qqy aragorn
 
 # I can't bundle the girinst RepBase libraries with the docker image,
 # so you'll need to get them yourself. Download them from
-# http://www.girinst.org/server/RepBase/protected/repeatmaskerlibraries/repeatmaskerlibraries-20140131.tar.gz
+# http://www.girinst.org/server/RepBase/protected/repeatmaskerlibraries/RepBaseRepeatMaskerEdition-20170127.tar.gz
 
 ONBUILD WORKDIR /usr/local/RepeatMasker
 ONBUILD ADD repeatmaskerlibraries.tar.gz /usr/local/RepeatMasker
-ONBUILD RUN cd /usr/local/RepeatMasker && util/buildRMLibFromEMBL.pl Libraries/RepeatMaskerLib.embl > Libraries/RepeatMasker.lib \
+ONBUILD RUN cd /usr/local/RepeatMasker && util/buildRMLibFromEMBL.pl Libraries/RMRBSeqs.embl > Libraries/RepeatMasker.lib \
 		&& makeblastdb -dbtype nucl -in Libraries/RepeatMasker.lib > /dev/null 2>&1 \
         && makeblastdb -dbtype prot -in Libraries/RepeatPeps.lib > /dev/null 2>&1