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src/dataset_loaders/allen_brain_atlas_via_pooch
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lines changed Original file line number Diff line number Diff line change 7
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.DS_Store
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output
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trace- *
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- .ipynb_checkpoints
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+ .ipynb_checkpoints
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+ cache
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"brain_section_label" : "Zhuang-ABCA-1.080" ,
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}
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meta = {
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- "temp_dir" : "/tmp "
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+ "temp_dir" : "cache "
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}
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## VIASH END
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# loading annotation with pooch
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print (f"Loading annotation to '{ cache_path } '" )
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cell_metadata = pooch .retrieve (
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- url = "https://allen-brain-cell-atlas.s3-us-west-2.amazonaws.com/metadata/Zhuang-ABCA-1/20231215/cell_metadata .csv" ,
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+ url = "https://allen-brain-cell-atlas.s3-us-west-2.amazonaws.com/metadata/Zhuang-ABCA-1/20231215/views/cell_metadata_with_cluster_annotation .csv" ,
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fname = "cell_metadata_with_cluster_annotation.csv" ,
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path = cache_path ,
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known_hash = None ,
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