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Seurat v5.2.0

Test environments

  • local ubuntu 20.04 install, R 4.4.2
  • win-builder (oldrelease, release, devel)
  • mac-builder (devel)

We were unable to test on r-release on mac-builder because the portal seemed to point to the wrong version.

R CMD check results

There were no ERRORs or WARNINGs

There was one NOTE

❯ checking CRAN incoming feasibility ... [12s/61s] NOTE Maintainer: ‘Rahul Satija [email protected]’

Suggests or Enhances not in mainstream repositories: BPCells, enrichR, presto Availability using Additional_repositories specification: BPCells yes https://bnprks.r-universe.dev
enrichR yes https://cran.r-universe.dev
presto yes https://satijalab.r-universe.dev

BPCells, enrichR, and presto are hosted on R-universe and used conditionally in Seurat.

Downstream dependencies

There are 3 packages that depend on Seurat: CACIMAR, scCustomize, and SCdeconR; this update does not impact their functionality.

There are 34 packages that import Seurat: AnanseSeurat, APackOfTheClones, bbknnR, CAESAR.Suite, CAMML, DR.SC, DWLS, GeneNMF, ggsector, mixhvg, nebula, Platypus, PoweREST, PRECAST, ProFAST, rPanglaoDB, scAnnotate, scaper, sccca, scDiffCom, scGate, scGOclust, SCIntRuler, scMappR, scperturbR, scpoisson, SCRIP, scRNAstat, SignacX, SoupX, SpaCCI, SPECK, STREAK, and tidyseurat; this update does not impact their functionality.

There are 27 packages that suggest Seurat: BisqueRNA, Canek, cellpypes, CIARA, ClustAssess, clustree, combiroc, conos, countland, CRMetrics, CytoSimplex, DIscBIO, dyngen, easybio, grandR, harmony, laminr, mxfda, RESET, rliger, SCORPIUS, SCpubr, scregclust, Signac, SuperCell, treefit, and VAM; this update does not impact their functionality.