Merge branch 'hotfix/2.1.0'

Author: Shriram Bhosle

CHANGELOG.md

@@ -1,2 +1,6 @@
+### 2.1.0
+* Added generic PathogenDetection wrapper for GOTTCHA
+### 2.0.0
+* Added runVirusDetection.sh
 ### 1.0.0
-Compares and merges two files with user provided matching columns
+* Compares and merges two files with user provided matching columns

README.md

@@ -5,8 +5,11 @@ for usage:
 merge2files.pl -h
 
 ##runVirusdetection
-* Tool to detect virus or bacterial sequences in tumour samples using GOTTCHA
+* Tool to detect virus or bacterial sequences in sequenced samples using GOTTCHA
 * Tracey Allen K. Freitas, Po-E Li, Matthew B. Scholz and Patrick S. G. Chain (2015) Accurate read-based metagenome characterization using a hierarchical suite of unique signatures, Nucleic Acids Research (DOI: 10.1093/nar/gkv180)
 * Download latest signature database for specific organism from : ftp://ftp.lanl.gov/public/genome/gottcha/GOTTCHA_database_v20150825/
 * Also needs lookup database GOTTCHA_lookup.tar.gz
 * runVirusdetection.sh 
+##runPathogenDetection 
+* This is generic perl wrapper to detect pathogen seuences in using GOTTCHA method [see above description for reference]
+* More robust options to select unmapped reads sequences