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Access Metadata of Segments & Trees in Annotations #1195

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fm3 opened this issue Sep 23, 2024 · 4 comments
Open

Access Metadata of Segments & Trees in Annotations #1195

fm3 opened this issue Sep 23, 2024 · 4 comments

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@fm3
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fm3 commented Sep 23, 2024

scalableminds/webknossos#7875 introduces metadata for segments and trees and extends the NML format to include it. The libs should allow accessing it. We should discuss what the interface should look like.

@fm3 fm3 changed the title Access Metadata of Segments, Nodes & Trees in Annotations Access Metadata of Segments & Trees in Annotations Sep 23, 2024
@kabilar
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kabilar commented Oct 16, 2024

Hi @fm3, is there a way to use get_volume_layer_segments() to get the segment_id/name mapping without downloading the volume annotation NML file? Thank you.

@kabilar
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kabilar commented Oct 16, 2024

@fm3
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fm3 commented Oct 17, 2024

As I understand it, the python libs currently access the contents of annotations via the downloaded NML file. So I’m afraid the download step is not optional. Eventually, we may build APIs to interact with individual elements of annotations without the download step, but as far as I know that is not on the short-term agenda.
Tackling this issue concerning the new segment metadata will also be based on NML as an exchange format.

@kabilar
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kabilar commented Oct 17, 2024

Thanks for the quick response, @fm3. That sounds good.

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