fixed tree replacement bug (#63)

* fixed tree replacement bug

* Completed featureloding non-awkward input methods

* added exclusive_subdmerge

* Fixed listoffset-indexed array bug

* Added test for bugfix

* fixed attribute check error

* Added several methods

* Added parameter addition to some outgoing awkward arrays

* Added parameter adding

* Added basic numpy array handling

* Added constituents for general case

* removed numpy infrastructure

Author: aryan26roy

docs/AwkwardClusterSequence.rst

@@ -0,0 +1,13 @@
+fastjet package
+===============
+
+Awkward handling
+----------------
+
+
+.. autoclass:: fastjet._pyjet
+    :members:
+    :undoc-members:
+    :show-inheritance:
+    :private-members:
+    :special-members:

docs/conf.py

@@ -7,6 +7,8 @@
 # Warning: do not change the path here. To use autodoc, you need to install the
 # package first.
 
+import os
+import sys
 from typing import List
 
 # -- Project information -----------------------------------------------------
@@ -15,7 +17,8 @@
 copyright = "2021, The Scikit-HEP admins"
 author = "Aryan Roy"
 
-
+sys.path.insert(0, os.path.abspath("../src/fastjet"))
+sys.path.insert(0, os.path.abspath(".."))
 # -- General configuration ---------------------------------------------------
 
 # Add any Sphinx extension module names here, as strings. They can be
@@ -47,3 +50,5 @@
 # relative to this directory. They are copied after the builtin static files,
 # so a file named "default.css" will overwrite the builtin "default.css".
 html_static_path: List[str] = []
+
+master_doc = "index"

docs/index.rst

@@ -1,20 +1,28 @@
 
-Welcome to documentation!
-=========================
+**Welcome to documentation!**
+=============================
 
 
 Introduction
 ------------
 
-This should be updated!
+Fastjet is a library for perfomring Jet-Finding *within* the Scikit-HEP ecosystem.
+
+.. note::
+   This project is under active development.
+
 
 .. toctree::
    :maxdepth: 2
    :titlesonly:
    :caption: Contents
    :glob:
 
+   AwkwardClusterSequence
+
 
+.. autoclass:: fastjet.ClusterSequence
+   :members:
 
 Indices and tables
 ==================

src/fastjet/__init__.py

@@ -1,6 +1,7 @@
 # BSD 3-Clause License; see https://github.com/scikit-hep/fastjet/blob/main/LICENSE
 
 import awkward as ak
+import numpy as np
 
 import fastjet._ext  # noqa: F401, E402
 import fastjet._pyjet  # noqa: F401, E402
@@ -201,7 +202,7 @@ class ClusterSequence:  # The super class
     def __init__(self, data, jetdef):
         if not isinstance(jetdef, fastjet._swig.JetDefinition):
             raise AttributeError("JetDefinition is not correct")
-        if isinstance(data, ak.Array):
+        if isinstance(data, ak.Array) or isinstance(data, np.ndarray):
             self.__class__ = fastjet._pyjet.AwkwardClusterSequence
             fastjet._pyjet.AwkwardClusterSequence.__init__(
                 self, data=data, jetdef=jetdef