Introduce clang-format in pre-commit (#125)

chrispap95 · pre-commit-ci[bot] · web-flow · commit 4c0a3f2c408c · 2022-10-28T10:08:45.000-07:00
* give a shot at clang-format * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * oops... forgot MANIFEST.in Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
diff --git a/.clang-format b/.clang-format
@@ -0,0 +1,191 @@
+---
+Language:        Cpp
+# BasedOnStyle:  LLVM
+AccessModifierOffset: -2
+AlignAfterOpenBracket: Align
+AlignArrayOfStructures: None
+AlignConsecutiveMacros: None
+AlignConsecutiveAssignments: None
+AlignConsecutiveBitFields: None
+AlignConsecutiveDeclarations: None
+AlignEscapedNewlines: Right
+AlignOperands:   Align
+AlignTrailingComments: true
+AllowAllArgumentsOnNextLine: true
+AllowAllParametersOfDeclarationOnNextLine: true
+AllowShortEnumsOnASingleLine: true
+AllowShortBlocksOnASingleLine: Never
+AllowShortCaseLabelsOnASingleLine: false
+AllowShortFunctionsOnASingleLine: All
+AllowShortLambdasOnASingleLine: All
+AllowShortIfStatementsOnASingleLine: Never
+AllowShortLoopsOnASingleLine: false
+AlwaysBreakAfterDefinitionReturnType: None
+AlwaysBreakAfterReturnType: None
+AlwaysBreakBeforeMultilineStrings: false
+AlwaysBreakTemplateDeclarations: MultiLine
+AttributeMacros:
+  - __capability
+BinPackArguments: true
+BinPackParameters: true
+BraceWrapping:
+  AfterCaseLabel:  false
+  AfterClass:      false
+  AfterControlStatement: Never
+  AfterEnum:       false
+  AfterFunction:   false
+  AfterNamespace:  false
+  AfterObjCDeclaration: false
+  AfterStruct:     false
+  AfterUnion:      false
+  AfterExternBlock: false
+  BeforeCatch:     false
+  BeforeElse:      false
+  BeforeLambdaBody: false
+  BeforeWhile:     false
+  IndentBraces:    false
+  SplitEmptyFunction: true
+  SplitEmptyRecord: true
+  SplitEmptyNamespace: true
+BreakBeforeBinaryOperators: None
+BreakBeforeConceptDeclarations: true
+BreakBeforeBraces: Attach
+BreakBeforeInheritanceComma: false
+BreakInheritanceList: BeforeColon
+BreakBeforeTernaryOperators: true
+BreakConstructorInitializersBeforeComma: false
+BreakConstructorInitializers: BeforeColon
+BreakAfterJavaFieldAnnotations: false
+BreakStringLiterals: true
+ColumnLimit:     80
+CommentPragmas:  '^ IWYU pragma:'
+QualifierAlignment: Leave
+CompactNamespaces: false
+ConstructorInitializerIndentWidth: 4
+ContinuationIndentWidth: 4
+Cpp11BracedListStyle: true
+DeriveLineEnding: true
+DerivePointerAlignment: false
+DisableFormat:   false
+EmptyLineAfterAccessModifier: Never
+EmptyLineBeforeAccessModifier: LogicalBlock
+ExperimentalAutoDetectBinPacking: false
+PackConstructorInitializers: BinPack
+BasedOnStyle:    ''
+ConstructorInitializerAllOnOneLineOrOnePerLine: false
+AllowAllConstructorInitializersOnNextLine: true
+FixNamespaceComments: true
+ForEachMacros:
+  - foreach
+  - Q_FOREACH
+  - BOOST_FOREACH
+IfMacros:
+  - KJ_IF_MAYBE
+IncludeBlocks:   Preserve
+IncludeCategories:
+  - Regex:           '^"(llvm|llvm-c|clang|clang-c)/'
+    Priority:        2
+    SortPriority:    0
+    CaseSensitive:   false
+  - Regex:           '^(<|"(gtest|gmock|isl|json)/)'
+    Priority:        3
+    SortPriority:    0
+    CaseSensitive:   false
+  - Regex:           '.*'
+    Priority:        1
+    SortPriority:    0
+    CaseSensitive:   false
+IncludeIsMainRegex: '(Test)?$'
+IncludeIsMainSourceRegex: ''
+IndentAccessModifiers: false
+IndentCaseLabels: false
+IndentCaseBlocks: false
+IndentGotoLabels: true
+IndentPPDirectives: None
+IndentExternBlock: AfterExternBlock
+IndentRequires:  false
+IndentWidth:     2
+IndentWrappedFunctionNames: false
+InsertTrailingCommas: None
+JavaScriptQuotes: Leave
+JavaScriptWrapImports: true
+KeepEmptyLinesAtTheStartOfBlocks: true
+LambdaBodyIndentation: Signature
+MacroBlockBegin: ''
+MacroBlockEnd:   ''
+MaxEmptyLinesToKeep: 1
+NamespaceIndentation: None
+ObjCBinPackProtocolList: Auto
+ObjCBlockIndentWidth: 2
+ObjCBreakBeforeNestedBlockParam: true
+ObjCSpaceAfterProperty: false
+ObjCSpaceBeforeProtocolList: true
+PenaltyBreakAssignment: 2
+PenaltyBreakBeforeFirstCallParameter: 19
+PenaltyBreakComment: 300
+PenaltyBreakFirstLessLess: 120
+PenaltyBreakOpenParenthesis: 0
+PenaltyBreakString: 1000
+PenaltyBreakTemplateDeclaration: 10
+PenaltyExcessCharacter: 1000000
+PenaltyReturnTypeOnItsOwnLine: 60
+PenaltyIndentedWhitespace: 0
+PointerAlignment: Right
+PPIndentWidth:   -1
+ReferenceAlignment: Pointer
+ReflowComments:  true
+RemoveBracesLLVM: false
+SeparateDefinitionBlocks: Leave
+ShortNamespaceLines: 1
+SortIncludes:    CaseSensitive
+SortJavaStaticImport: Before
+SortUsingDeclarations: true
+SpaceAfterCStyleCast: false
+SpaceAfterLogicalNot: false
+SpaceAfterTemplateKeyword: true
+SpaceBeforeAssignmentOperators: true
+SpaceBeforeCaseColon: false
+SpaceBeforeCpp11BracedList: false
+SpaceBeforeCtorInitializerColon: true
+SpaceBeforeInheritanceColon: true
+SpaceBeforeParens: ControlStatements
+SpaceBeforeParensOptions:
+  AfterControlStatements: true
+  AfterForeachMacros: true
+  AfterFunctionDefinitionName: false
+  AfterFunctionDeclarationName: false
+  AfterIfMacros:   true
+  AfterOverloadedOperator: false
+  BeforeNonEmptyParentheses: false
+SpaceAroundPointerQualifiers: Default
+SpaceBeforeRangeBasedForLoopColon: true
+SpaceInEmptyBlock: false
+SpaceInEmptyParentheses: false
+SpacesBeforeTrailingComments: 1
+SpacesInAngles:  Never
+SpacesInConditionalStatement: false
+SpacesInContainerLiterals: true
+SpacesInCStyleCastParentheses: false
+SpacesInLineCommentPrefix:
+  Minimum:         1
+  Maximum:         -1
+SpacesInParentheses: false
+SpacesInSquareBrackets: false
+SpaceBeforeSquareBrackets: false
+BitFieldColonSpacing: Both
+Standard:        Latest
+StatementAttributeLikeMacros:
+  - Q_EMIT
+StatementMacros:
+  - Q_UNUSED
+  - QT_REQUIRE_VERSION
+TabWidth:        8
+UseCRLF:         false
+UseTab:          Never
+WhitespaceSensitiveMacros:
+  - STRINGIZE
+  - PP_STRINGIZE
+  - BOOST_PP_STRINGIZE
+  - NS_SWIFT_NAME
+  - CF_SWIFT_NAME
+...
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -46,3 +46,9 @@ repos:
   hooks:
   - id: check-manifest
     stages: [manual]
+
+- repo: https://github.com/pre-commit/mirrors-clang-format
+  rev: "v14.0.6"
+  hooks:
+    - id: clang-format
+      types_or: [c++, c, cuda]
diff --git a/MANIFEST.in b/MANIFEST.in
@@ -3,4 +3,4 @@ graft tests
 graft fastjet-core
 graft pybind11
 global-exclude .git .gitmodules
-include LICENSE README.md pyproject.toml setup.py setup.cfg patch.txt
+include LICENSE README.md pyproject.toml setup.py setup.cfg patch.txt .clang-format
diff --git a/src/_ext.cpp b/src/_ext.cpp
@@ -1,66 +1,74 @@
-// BSD 3-Clause License; see https://github.com/scikit-hep/fastjet/blob/main/LICENSE
+// BSD 3-Clause License; see
+// https://github.com/scikit-hep/fastjet/blob/main/LICENSE
 
-#include <iostream>
-#include <cstdlib>
-#include <vector>
 #include <algorithm>
+#include <cstdlib>
+#include <iostream>
 #include <unordered_map>
+#include <vector>
 
+#include <fastjet/AreaDefinition.hh>
 #include <fastjet/ClusterSequence.hh>
 #include <fastjet/ClusterSequenceArea.hh>
+#include <fastjet/GhostedAreaSpec.hh>
 #include <fastjet/JetDefinition.hh>
 #include <fastjet/PseudoJet.hh>
-#include <fastjet/AreaDefinition.hh>
-#include <fastjet/GhostedAreaSpec.hh>
 
-#include <pybind11/pybind11.h>
-#include <pybind11/operators.h>
 #include <pybind11/numpy.h>
+#include <pybind11/operators.h>
+#include <pybind11/pybind11.h>
 #include <pybind11/stl.h>
 
 namespace fj = fastjet;
 namespace py = pybind11;
 using namespace pybind11::literals;
 
-typedef struct{
-  PyObject_HEAD
-  void *ptr;
+typedef struct {
+  PyObject_HEAD void *ptr;
   void *ty;
   int own;
   PyObject *next;
 } SwigPyObject;
 
 template <typename T>
-T swigtocpp(py::object obj) {  // unwraps python object to get the cpp pointer from the swig bindings
+T swigtocpp(py::object obj) { // unwraps python object to get the cpp pointer
+                              // from the swig bindings
   auto upointer = obj.attr("this").ptr();
-  auto swigpointer = reinterpret_cast<SwigPyObject*>(upointer);
+  auto swigpointer = reinterpret_cast<SwigPyObject *>(upointer);
   auto objpointervoid = swigpointer->ptr;
   auto objpointer = reinterpret_cast<T>(objpointervoid);
   return objpointer;
 }
-class output_wrapper{
-  public:
+class output_wrapper {
+public:
   std::vector<std::shared_ptr<fj::ClusterSequence>> cse;
   std::vector<std::shared_ptr<std::vector<fj::PseudoJet>>> parts;
 
-  std::shared_ptr<fj::ClusterSequence> getCluster(){
+  std::shared_ptr<fj::ClusterSequence> getCluster() {
     auto a = cse[0];
     return a;
   }
-  void setCluster(){}
+  void setCluster() {}
 };
 
-output_wrapper interfacemulti(py::array_t<double, py::array::c_style | py::array::forcecast> pxi, py::array_t<double, py::array::c_style | py::array::forcecast> pyi, py::array_t<double, py::array::c_style | py::array::forcecast> pzi, py::array_t<double, py::array::c_style | py::array::forcecast> Ei,py::array_t<int, py::array::c_style | py::array::forcecast> offsets, py::object jetdef)
-{
+output_wrapper interfacemulti(
+    py::array_t<double, py::array::c_style | py::array::forcecast> pxi,
+    py::array_t<double, py::array::c_style | py::array::forcecast> pyi,
+    py::array_t<double, py::array::c_style | py::array::forcecast> pzi,
+    py::array_t<double, py::array::c_style | py::array::forcecast> Ei,
+    py::array_t<int, py::array::c_style | py::array::forcecast> offsets,
+    py::object jetdef) {
   py::buffer_info infooff = offsets.request();
   py::buffer_info infopx = pxi.request();
-  py::buffer_info infopy = pyi.request();  // requesting buffer information of the input
+  py::buffer_info infopy =
+      pyi.request(); // requesting buffer information of the input
   py::buffer_info infopz = pzi.request();
   py::buffer_info infoE = Ei.request();
 
   auto offptr = static_cast<int *>(infooff.ptr);
   auto pxptr = static_cast<double *>(infopx.ptr);
-  auto pyptr = static_cast<double *>(infopy.ptr);  // pointer to the initial value
+  auto pyptr =
+      static_cast<double *>(infopy.ptr); // pointer to the initial value
   auto pzptr = static_cast<double *>(infopz.ptr);
   auto Eptr = static_cast<double *>(infoE.ptr);
 
@@ -71,31 +79,34 @@ output_wrapper interfacemulti(py::array_t<double, py::array::c_style | py::array
   std::vector<double> constphi;
   std::vector<double> idx;
   std::vector<double> idxo;
-  for (int i = 0; i < dimoff-1; i++) {
+  for (int i = 0; i < dimoff - 1; i++) {
     std::vector<fj::PseudoJet> particles;
-    for(int j = *offptr; j < *(offptr+1); j++ ){
-    particles.push_back(fj::PseudoJet(*pxptr, *pyptr, *pzptr, *Eptr));
-    pxptr++;
-    pyptr++;
-    pzptr++;
-    Eptr++;
+    for (int j = *offptr; j < *(offptr + 1); j++) {
+      particles.push_back(fj::PseudoJet(*pxptr, *pyptr, *pzptr, *Eptr));
+      pxptr++;
+      pyptr++;
+      pzptr++;
+      Eptr++;
     }
 
-  std::vector<fj::PseudoJet> jets;
-  auto jet_def = swigtocpp<fj::JetDefinition*>(jetdef);
-  std::shared_ptr<std::vector<fj::PseudoJet>> pj = std::make_shared<std::vector<fj::PseudoJet>>(particles);
-  std::shared_ptr<fastjet::ClusterSequence> cs = std::make_shared<fastjet::ClusterSequence>(*pj, *jet_def);
-  auto j = cs->inclusive_jets();
-  offptr++;
-  ow.cse.push_back(cs);
-  ow.parts.push_back(pj);
+    std::vector<fj::PseudoJet> jets;
+    auto jet_def = swigtocpp<fj::JetDefinition *>(jetdef);
+    std::shared_ptr<std::vector<fj::PseudoJet>> pj =
+        std::make_shared<std::vector<fj::PseudoJet>>(particles);
+    std::shared_ptr<fastjet::ClusterSequence> cs =
+        std::make_shared<fastjet::ClusterSequence>(*pj, *jet_def);
+    auto j = cs->inclusive_jets();
+    offptr++;
+    ow.cse.push_back(cs);
+    ow.parts.push_back(pj);
   }
   return ow;
 }
 
 PYBIND11_MODULE(_ext, m) {
   using namespace fastjet;
-  m.def("interfacemulti", &interfacemulti, py::return_value_policy::take_ownership);
+  m.def("interfacemulti", &interfacemulti,
+        py::return_value_policy::take_ownership);
   /// Jet algorithm definitions
 
   py::class_<output_wrapper>(m, "output_wrapper")
@@ -1827,6 +1838,11 @@ PYBIND11_MODULE(_ext, m) {
           pt, eta, phi, m of inclusive jets.
       )pbdoc");
   py::class_<ClusterSequence>(m, "ClusterSequence")
-    .def(py::init<const std::vector<PseudoJet> &, const JetDefinition &, const bool &>(), "pseudojets"_a, "jet_definition"_a, "write_out_combinations"_a = false, "Create a ClusterSequence, starting from the supplied set of PseudoJets and clustering them with jet definition specified by jet_definition (which also specifies the clustering strategy)");
-
+      .def(py::init<const std::vector<PseudoJet> &, const JetDefinition &,
+                    const bool &>(),
+           "pseudojets"_a, "jet_definition"_a,
+           "write_out_combinations"_a = false,
+           "Create a ClusterSequence, starting from the supplied set of "
+           "PseudoJets and clustering them with jet definition specified by "
+           "jet_definition (which also specifies the clustering strategy)");
 }
