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refactor: migrate setup configuration to pyproject.toml
Moved all package metadata and dependencies from setup.cfg and setup.py to pyproject.toml for a more modern and standardized project setup. Updated pre-commit hooks and made minor corrections in the code to align with the new configurations.
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,13 +1,97 @@ | ||
| [build-system] | ||
| requires = [ | ||
| "setuptools>=42", | ||
| "setuptools_scm[toml]>=3.4" | ||
| requires = ["hatchling", "hatch-vcs"] | ||
| build-backend = "hatchling.build" | ||
|
|
||
| [project] | ||
| name = "hepstats" | ||
| description = "statistics tools and utilities" | ||
| authors = [{ name = "Matthieu Marinangeli", email = "[email protected]" }] | ||
| maintainers = [{ name = "Scikit-HEP", email = "[email protected]" }] | ||
| license = { text = "BSD 3-Clause License" } | ||
| classifiers = [ | ||
| "Development Status :: 4 - Beta", | ||
| "Intended Audience :: Developers", | ||
| "Intended Audience :: Information Technology", | ||
| "Intended Audience :: Science/Research", | ||
| "License :: OSI Approved :: BSD License", | ||
| "Operating System :: MacOS", | ||
| "Operating System :: Microsoft :: Windows", | ||
| "Operating System :: POSIX", | ||
| "Operating System :: Unix", | ||
| "Programming Language :: C++", | ||
| "Programming Language :: Python", | ||
| "Programming Language :: Python :: 3", | ||
| "Programming Language :: Python :: 3 :: Only", | ||
| "Programming Language :: Python :: 3.9", | ||
| "Programming Language :: Python :: 3.10", | ||
| "Programming Language :: Python :: 3.11", | ||
| "Programming Language :: Python :: 3.12", | ||
| "Topic :: Scientific/Engineering", | ||
| "Topic :: Scientific/Engineering :: Information Analysis", | ||
| "Topic :: Scientific/Engineering :: Mathematics", | ||
| "Topic :: Scientific/Engineering :: Physics", | ||
| "Topic :: Software Development", | ||
| "Topic :: Utilities", | ||
| ] | ||
| urls = { Homepage = "https://github.com/scikit-hep/hepstats" } | ||
| requires-python = ">=3.9" | ||
| dependencies = [ | ||
| "asdf", | ||
| "numpy", | ||
| "pandas", | ||
| "scipy", | ||
| "tqdm", | ||
| "uhi", | ||
| ] | ||
| dynamic = ["version"] | ||
|
|
||
| [project.readme] | ||
| file = "README.md" | ||
| content-type = "text/markdown" | ||
|
|
||
| [project.optional-dependencies] | ||
| dev = [ | ||
| "hepstats[docs]", | ||
| "hepstats[test]", | ||
| "pre-commit", | ||
| ] | ||
| docs = [ | ||
| "matplotlib", | ||
| "pydata-sphinx-theme", | ||
| "sphinx>=3.1.2", | ||
| "sphinx-autodoc-typehints", | ||
| "sphinx-copybutton", | ||
| "sphinxcontrib-bibtex>=2.0.0", | ||
| ] | ||
| doc = ["hepstats[docs]"] # alias | ||
| test = [ | ||
| "pytest", | ||
| "pytest-cov", | ||
| "pytest-runner", | ||
| "zfit>=0.20.0", | ||
| ] | ||
| zfit = ["zfit>=0.20.0"] | ||
|
|
||
|
|
||
|
|
||
| [tool.pytest.ini_options] | ||
| junit_family = "xunit2" | ||
| testpaths = ["tests"] | ||
|
|
||
| [tool.check-manifest] | ||
| ignore = ["src/hepstats/_version.py"] | ||
|
|
||
| [tool.build_sphinx] | ||
| project = "hepstats" | ||
| source-dir = "docs" | ||
| build-dir = "docs/_build" | ||
| all-files = "1" | ||
| warning-is-error = "0" | ||
|
|
||
| build-backend = "setuptools.build_meta" | ||
|
|
||
| [tool.setuptools_scm] | ||
| write_to = "src/hepstats/version.py" | ||
| [tool.hatch] | ||
| version.source = "vcs" | ||
| build.hooks.vcs.version-file = "src/hepstats/_version.py" | ||
|
|
||
| [tool.ruff] | ||
| #src = ["src"] | ||
|
|
@@ -20,41 +104,42 @@ exclude = [ | |
| ] | ||
| [tool.ruff.lint] | ||
| extend-select = [ | ||
| "B", # flake8-bugbear | ||
| "I", # isort | ||
| "ARG", # flake8-unused-arguments | ||
| "C4", # flake8-comprehensions | ||
| "EM", # flake8-errmsg | ||
| "ICN", # flake8-import-conventions | ||
| "G", # flake8-logging-format | ||
| "PGH", # pygrep-hooks | ||
| "PIE", # flake8-pie | ||
| "PL", # pylint | ||
| "PT", # flake8-pytest-style | ||
| "PTH", # flake8-use-pathlib | ||
| "RET", # flake8-return | ||
| "RUF", # Ruff-specific | ||
| "SIM", # flake8-simplify | ||
| "T20", # flake8-print | ||
| "UP", # pyupgrade | ||
| "YTT", # flake8-2020 | ||
| "EXE", # flake8-executable | ||
| "NPY", # NumPy specific rules | ||
| "PD", # pandas-vet | ||
| "B", # flake8-bugbear | ||
| "I", # isort | ||
| "ARG", # flake8-unused-arguments | ||
| "C4", # flake8-comprehensions | ||
| "EM", # flake8-errmsg | ||
| "ICN", # flake8-import-conventions | ||
| "G", # flake8-logging-format | ||
| "PGH", # pygrep-hooks | ||
| "PIE", # flake8-pie | ||
| "PL", # pylint | ||
| "PT", # flake8-pytest-style | ||
| "PTH", # flake8-use-pathlib | ||
| "RET", # flake8-return | ||
| "RUF", # Ruff-specific | ||
| "SIM", # flake8-simplify | ||
| "T20", # flake8-print | ||
| "UP", # pyupgrade | ||
| "YTT", # flake8-2020 | ||
| "EXE", # flake8-executable | ||
| "NPY", # NumPy specific rules | ||
| "PD", # pandas-vet | ||
| ] | ||
| ignore = [ | ||
| "UP007", # type annotation upgrade, breaks pydantic for Python 3.9 (remove once above) | ||
| "PLR09", # Too many <...> | ||
| "PLR2004", # Magic value used in comparison | ||
| "ISC001", # Conflicts with formatter | ||
| "RET505", # This is sometimes wanted, protets against accidental intendation | ||
| "PD901", # "avoid using `df[...].values`" -> no, this is a very good name if there is only one df | ||
| "PD011", # "replace `df[...].values` with `df[...].to_numpy()`" -> not yet, it's not deprecated. | ||
| "UP007", # type annotation upgrade, breaks pydantic for Python 3.9 (remove once above) | ||
| "PLR09", # Too many <...> | ||
| "PLR2004", # Magic value used in comparison | ||
| "ISC001", # Conflicts with formatter | ||
| "RET505", # This is sometimes wanted, protets against accidental intendation | ||
| "PD901", # "avoid using `df[...].values`" -> no, this is a very good name if there is only one df | ||
| "PD011", # "replace `df[...].values` with `df[...].to_numpy()`" -> not yet, it's not deprecated. | ||
| # Prefer to have a single way to access the data if we don't care about whether it's a numpy array or not. | ||
| "PLW0603", # updating global variables with a function is bad, but we use it for | ||
| "PLW2901", # "for loop overwritten by assignment" -> we use this to update the loop variable | ||
| "PD013", # "melt over stack": df function, but triggers on tensors | ||
| "NPY002", # "Use rnd generator in numpy" -> we use np.random for some legacy stuff but do use the new one where we can | ||
| "PLW0603", # updating global variables with a function is bad, but we use it for | ||
| "PLW2901", # "for loop overwritten by assignment" -> we use this to update the loop variable | ||
| "PD013", # "melt over stack": df function, but triggers on tensors | ||
| "NPY002", # "Use rnd generator in numpy" -> we use np.random for some legacy stuff but do use the new one where we can | ||
| "T201", # "print used" -> we use print for displaying information in verbose mode | ||
|
|
||
| ] | ||
| isort.required-imports = ["from __future__ import annotations"] | ||
|
|
||
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