feat: TotalANVI model updated (#3259)

Co-authored-by: Can Ergen <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

Author: 3 people

CHANGELOG.md

@@ -15,6 +15,7 @@ to [Semantic Versioning]. Full commit history is available in the
 - Add supervised module class {class}`scvi.module.base.SupervisedModuleClass`. {pr}`3237`.
 - Add get normalized function model property for any generative model {pr}`3238` and changed
     get_accessibility_estimates to get_normalized_accessibility, where needed.
+- Add {class}`scvi.external.TOTALANVI`. {pr}`3259`.
 - Add Early stopping KL warmup steps. {pr}`3262`.
 - Add Minification option to {class}`~scvi.model.LinearSCVI` {pr}`3294`.
 

docs/tutorials/notebooks

@@ -12,6 +12,7 @@
 from .stereoscope import RNAStereoscope, SpatialStereoscope
 from .sysvi import SysVI
 from .tangram import Tangram
+from .totalanvi import TOTALANVI
 from .velovi import VELOVI
 
 __all__ = [
@@ -23,6 +24,7 @@
     "SpatialStereoscope",
     "CellAssign",
     "Tangram",
+    "TOTALANVI",
     "SCBASSET",
     "POISSONVI",
     "ContrastiveVI",

src/scvi/external/__init__.py

@@ -0,0 +1,3 @@
+from ._model import TOTALANVI
+
+__all__ = ["TOTALANVI"]