Skip to content

Commit 7c627b0

Browse files
endre-seqeraendre-seqera
committedJan 27, 2025
feat: data studios add command
1 parent d60e842 commit 7c627b0

File tree

2 files changed

+75
-6
lines changed

2 files changed

+75
-6
lines changed
 

‎conf/reflect-config.json

+7-6
Original file line numberDiff line numberDiff line change
@@ -2290,7 +2290,7 @@
22902290
"allDeclaredFields":true,
22912291
"allDeclaredMethods":true,
22922292
"allDeclaredConstructors":true,
2293-
"methods":[{"name":"<init>","parameterTypes":[] }, {"name":"getCliPath","parameterTypes":[] }, {"name":"getComputeJobRole","parameterTypes":[] }, {"name":"getComputeQueue","parameterTypes":[] }, {"name":"getDiscriminator","parameterTypes":[] }, {"name":"getDragenInstanceType","parameterTypes":[] }, {"name":"getDragenQueue","parameterTypes":[] }, {"name":"getEnvironment","parameterTypes":[] }, {"name":"getExecutionRole","parameterTypes":[] }, {"name":"getForge","parameterTypes":[] }, {"name":"getForgedResources","parameterTypes":[] }, {"name":"getFusion2Enabled","parameterTypes":[] }, {"name":"getHeadJobCpus","parameterTypes":[] }, {"name":"getHeadJobMemoryMb","parameterTypes":[] }, {"name":"getHeadJobRole","parameterTypes":[] }, {"name":"getHeadQueue","parameterTypes":[] }, {"name":"getLogGroup","parameterTypes":[] }, {"name":"getNvnmeStorageEnabled","parameterTypes":[] }, {"name":"getPostRunScript","parameterTypes":[] }, {"name":"getPreRunScript","parameterTypes":[] }, {"name":"getRegion","parameterTypes":[] }, {"name":"getVolumes","parameterTypes":[] }, {"name":"getWaveEnabled","parameterTypes":[] }, {"name":"getWorkDir","parameterTypes":[] }, {"name":"setCliPath","parameterTypes":["java.lang.String"] }, {"name":"setComputeJobRole","parameterTypes":["java.lang.String"] }, {"name":"setComputeQueue","parameterTypes":["java.lang.String"] }, {"name":"setDragenInstanceType","parameterTypes":["java.lang.String"] }, {"name":"setDragenQueue","parameterTypes":["java.lang.String"] }, {"name":"setEnvironment","parameterTypes":["java.util.List"] }, {"name":"setExecutionRole","parameterTypes":["java.lang.String"] }, {"name":"setForge","parameterTypes":["io.seqera.tower.model.ForgeConfig"] }, {"name":"setForgedResources","parameterTypes":["java.util.List"] }, {"name":"setFusion2Enabled","parameterTypes":["java.lang.Boolean"] }, {"name":"setHeadJobCpus","parameterTypes":["java.lang.Integer"] }, {"name":"setHeadJobMemoryMb","parameterTypes":["java.lang.Integer"] }, {"name":"setHeadJobRole","parameterTypes":["java.lang.String"] }, {"name":"setHeadQueue","parameterTypes":["java.lang.String"] }, {"name":"setLogGroup","parameterTypes":["java.lang.String"] }, {"name":"setNvnmeStorageEnabled","parameterTypes":["java.lang.Boolean"] }, {"name":"setPostRunScript","parameterTypes":["java.lang.String"] }, {"name":"setPreRunScript","parameterTypes":["java.lang.String"] }, {"name":"setRegion","parameterTypes":["java.lang.String"] }, {"name":"setVolumes","parameterTypes":["java.util.List"] }, {"name":"setWaveEnabled","parameterTypes":["java.lang.Boolean"] }, {"name":"setWorkDir","parameterTypes":["java.lang.String"] }]
2293+
"methods":[{"name":"<init>","parameterTypes":[] }, {"name":"getCliPath","parameterTypes":[] }, {"name":"getComputeJobRole","parameterTypes":[] }, {"name":"getComputeQueue","parameterTypes":[] }, {"name":"getDiscriminator","parameterTypes":[] }, {"name":"getDragenInstanceType","parameterTypes":[] }, {"name":"getDragenQueue","parameterTypes":[] }, {"name":"getEnvironment","parameterTypes":[] }, {"name":"getExecutionRole","parameterTypes":[] }, {"name":"getForge","parameterTypes":[] }, {"name":"getForgedResources","parameterTypes":[] }, {"name":"getFusion2Enabled","parameterTypes":[] }, {"name":"getHeadJobCpus","parameterTypes":[] }, {"name":"getHeadJobMemoryMb","parameterTypes":[] }, {"name":"getHeadJobRole","parameterTypes":[] }, {"name":"getHeadQueue","parameterTypes":[] }, {"name":"getLogGroup","parameterTypes":[] }, {"name":"getNvnmeStorageEnabled","parameterTypes":[] }, {"name":"getPostRunScript","parameterTypes":[] }, {"name":"getPreRunScript","parameterTypes":[] }, {"name":"getRegion","parameterTypes":[] }, {"name":"getVolumes","parameterTypes":[] }, {"name":"getWaveEnabled","parameterTypes":[] }, {"name":"getWorkDir","parameterTypes":[] }, {"name":"setCliPath","parameterTypes":["java.lang.String"] }, {"name":"setComputeJobRole","parameterTypes":["java.lang.String"] }, {"name":"setComputeQueue","parameterTypes":["java.lang.String"] }, {"name":"setDragenInstanceType","parameterTypes":["java.lang.String"] }, {"name":"setDragenQueue","parameterTypes":["java.lang.String"] }, {"name":"setEnvironment","parameterTypes":["java.util.List"] }, {"name":"setExecutionRole","parameterTypes":["java.lang.String"] }, {"name":"setForge","parameterTypes":["io.seqera.tower.model.ForgeConfig"] }, {"name":"setForgedResources","parameterTypes":["java.util.List"] }, {"name":"setFusion2Enabled","parameterTypes":["java.lang.Boolean"] }, {"name":"setHeadJobCpus","parameterTypes":["java.lang.Integer"] }, {"name":"setHeadJobMemoryMb","parameterTypes":["java.lang.Integer"] }, {"name":"setHeadJobRole","parameterTypes":["java.lang.String"] }, {"name":"setHeadQueue","parameterTypes":["java.lang.String"] }, {"name":"setLogGroup","parameterTypes":["java.lang.String"] }, {"name":"setNextflowConfig","parameterTypes":["java.lang.String"] }, {"name":"setNvnmeStorageEnabled","parameterTypes":["java.lang.Boolean"] }, {"name":"setPostRunScript","parameterTypes":["java.lang.String"] }, {"name":"setPreRunScript","parameterTypes":["java.lang.String"] }, {"name":"setRegion","parameterTypes":["java.lang.String"] }, {"name":"setVolumes","parameterTypes":["java.util.List"] }, {"name":"setWaveEnabled","parameterTypes":["java.lang.Boolean"] }, {"name":"setWorkDir","parameterTypes":["java.lang.String"] }]
22942294
},
22952295
{
22962296
"name":"io.seqera.tower.model.AwsSecurityKeys",
@@ -2488,13 +2488,14 @@
24882488
"allDeclaredFields":true,
24892489
"allDeclaredMethods":true,
24902490
"allDeclaredConstructors":true,
2491-
"methods":[{"name":"getDescription","parameterTypes":[] }, {"name":"getIcon","parameterTypes":[] }, {"name":"getLabelIds","parameterTypes":[] }, {"name":"getLaunch","parameterTypes":[] }, {"name":"getName","parameterTypes":[] }]
2491+
"methods":[{"name":"<init>","parameterTypes":[] }, {"name":"getDescription","parameterTypes":[] }, {"name":"getIcon","parameterTypes":[] }, {"name":"getLabelIds","parameterTypes":[] }, {"name":"getLaunch","parameterTypes":[] }, {"name":"getName","parameterTypes":[] }, {"name":"setLaunch","parameterTypes":["io.seqera.tower.model.WorkflowLaunchRequest"] }]
24922492
},
24932493
{
24942494
"name":"io.seqera.tower.model.CreatePipelineResponse",
24952495
"allDeclaredFields":true,
24962496
"allDeclaredMethods":true,
2497-
"allDeclaredConstructors":true
2497+
"allDeclaredConstructors":true,
2498+
"methods":[{"name":"<init>","parameterTypes":[] }, {"name":"setPipeline","parameterTypes":["io.seqera.tower.model.PipelineDbDto"] }]
24982499
},
24992500
{
25002501
"name":"io.seqera.tower.model.CreatePipelineSecretRequest",
@@ -2946,7 +2947,7 @@
29462947
"allDeclaredFields":true,
29472948
"allDeclaredMethods":true,
29482949
"allDeclaredConstructors":true,
2949-
"methods":[{"name":"<init>","parameterTypes":[] }, {"name":"getComputeEnv_JsonNullable","parameterTypes":[] }, {"name":"getConfigProfiles","parameterTypes":[] }, {"name":"getConfigText","parameterTypes":[] }, {"name":"getDateCreated","parameterTypes":[] }, {"name":"getEntryName","parameterTypes":[] }, {"name":"getHeadJobCpus","parameterTypes":[] }, {"name":"getHeadJobMemoryMb","parameterTypes":[] }, {"name":"getId","parameterTypes":[] }, {"name":"getLastUpdated","parameterTypes":[] }, {"name":"getMainScript","parameterTypes":[] }, {"name":"getOptimizationId","parameterTypes":[] }, {"name":"getOptimizationTargets","parameterTypes":[] }, {"name":"getParamsText","parameterTypes":[] }, {"name":"getPipeline","parameterTypes":[] }, {"name":"getPostRunScript","parameterTypes":[] }, {"name":"getPreRunScript","parameterTypes":[] }, {"name":"getPullLatest","parameterTypes":[] }, {"name":"getResume","parameterTypes":[] }, {"name":"getResumeLaunchId","parameterTypes":[] }, {"name":"getRevision","parameterTypes":[] }, {"name":"getRunName","parameterTypes":[] }, {"name":"getSchemaName","parameterTypes":[] }, {"name":"getSessionId","parameterTypes":[] }, {"name":"getStubRun","parameterTypes":[] }, {"name":"getTowerConfig","parameterTypes":[] }, {"name":"getUserSecrets","parameterTypes":[] }, {"name":"getWorkDir","parameterTypes":[] }, {"name":"getWorkspaceSecrets","parameterTypes":[] }, {"name":"setComputeEnv_JsonNullable","parameterTypes":["org.openapitools.jackson.nullable.JsonNullable"] }, {"name":"setConfigProfiles","parameterTypes":["java.util.List"] }, {"name":"setConfigText","parameterTypes":["java.lang.String"] }, {"name":"setDateCreated","parameterTypes":["java.time.OffsetDateTime"] }, {"name":"setEntryName","parameterTypes":["java.lang.String"] }, {"name":"setHeadJobCpus","parameterTypes":["java.lang.Integer"] }, {"name":"setHeadJobMemoryMb","parameterTypes":["java.lang.Integer"] }, {"name":"setId","parameterTypes":["java.lang.String"] }, {"name":"setLastUpdated","parameterTypes":["java.time.OffsetDateTime"] }, {"name":"setMainScript","parameterTypes":["java.lang.String"] }, {"name":"setOptimizationId","parameterTypes":["java.lang.String"] }, {"name":"setOptimizationTargets","parameterTypes":["java.lang.String"] }, {"name":"setParamsText","parameterTypes":["java.lang.String"] }, {"name":"setPipeline","parameterTypes":["java.lang.String"] }, {"name":"setPostRunScript","parameterTypes":["java.lang.String"] }, {"name":"setPreRunScript","parameterTypes":["java.lang.String"] }, {"name":"setPullLatest","parameterTypes":["java.lang.Boolean"] }, {"name":"setResume","parameterTypes":["java.lang.Boolean"] }, {"name":"setResumeLaunchId","parameterTypes":["java.lang.String"] }, {"name":"setRevision","parameterTypes":["java.lang.String"] }, {"name":"setRunName","parameterTypes":["java.lang.String"] }, {"name":"setSchemaName","parameterTypes":["java.lang.String"] }, {"name":"setSessionId","parameterTypes":["java.lang.String"] }, {"name":"setStubRun","parameterTypes":["java.lang.Boolean"] }, {"name":"setTowerConfig","parameterTypes":["java.lang.String"] }, {"name":"setUserSecrets","parameterTypes":["java.util.List"] }, {"name":"setWorkDir","parameterTypes":["java.lang.String"] }, {"name":"setWorkspaceSecrets","parameterTypes":["java.util.List"] }]
2950+
"methods":[{"name":"<init>","parameterTypes":[] }, {"name":"getComputeEnv_JsonNullable","parameterTypes":[] }, {"name":"getConfigProfiles","parameterTypes":[] }, {"name":"getConfigText","parameterTypes":[] }, {"name":"getDateCreated","parameterTypes":[] }, {"name":"getEntryName","parameterTypes":[] }, {"name":"getHeadJobCpus","parameterTypes":[] }, {"name":"getHeadJobMemoryMb","parameterTypes":[] }, {"name":"getId","parameterTypes":[] }, {"name":"getLastUpdated","parameterTypes":[] }, {"name":"getMainScript","parameterTypes":[] }, {"name":"getOptimizationId","parameterTypes":[] }, {"name":"getOptimizationTargets","parameterTypes":[] }, {"name":"getParamsText","parameterTypes":[] }, {"name":"getPipeline","parameterTypes":[] }, {"name":"getPostRunScript","parameterTypes":[] }, {"name":"getPreRunScript","parameterTypes":[] }, {"name":"getPullLatest","parameterTypes":[] }, {"name":"getResume","parameterTypes":[] }, {"name":"getResumeLaunchId","parameterTypes":[] }, {"name":"getRevision","parameterTypes":[] }, {"name":"getRunName","parameterTypes":[] }, {"name":"getSchemaName","parameterTypes":[] }, {"name":"getSessionId","parameterTypes":[] }, {"name":"getStubRun","parameterTypes":[] }, {"name":"getTowerConfig","parameterTypes":[] }, {"name":"getUserSecrets","parameterTypes":[] }, {"name":"getWorkDir","parameterTypes":[] }, {"name":"getWorkspaceSecrets","parameterTypes":[] }, {"name":"setComputeEnv_JsonNullable","parameterTypes":["org.openapitools.jackson.nullable.JsonNullable"] }, {"name":"setConfigProfiles","parameterTypes":["java.util.List"] }, {"name":"setConfigText","parameterTypes":["java.lang.String"] }, {"name":"setDateCreated","parameterTypes":["java.time.OffsetDateTime"] }, {"name":"setEntryName","parameterTypes":["java.lang.String"] }, {"name":"setHeadJobCpus","parameterTypes":["java.lang.Integer"] }, {"name":"setHeadJobMemoryMb","parameterTypes":["java.lang.Integer"] }, {"name":"setId","parameterTypes":["java.lang.String"] }, {"name":"setLastUpdated","parameterTypes":["java.time.OffsetDateTime"] }, {"name":"setLaunchContainer","parameterTypes":["java.lang.String"] }, {"name":"setMainScript","parameterTypes":["java.lang.String"] }, {"name":"setOptimizationId","parameterTypes":["java.lang.String"] }, {"name":"setOptimizationTargets","parameterTypes":["java.lang.String"] }, {"name":"setParamsText","parameterTypes":["java.lang.String"] }, {"name":"setPipeline","parameterTypes":["java.lang.String"] }, {"name":"setPostRunScript","parameterTypes":["java.lang.String"] }, {"name":"setPreRunScript","parameterTypes":["java.lang.String"] }, {"name":"setPullLatest","parameterTypes":["java.lang.Boolean"] }, {"name":"setResume","parameterTypes":["java.lang.Boolean"] }, {"name":"setResumeLaunchId","parameterTypes":["java.lang.String"] }, {"name":"setRevision","parameterTypes":["java.lang.String"] }, {"name":"setRunName","parameterTypes":["java.lang.String"] }, {"name":"setSchemaName","parameterTypes":["java.lang.String"] }, {"name":"setSessionId","parameterTypes":["java.lang.String"] }, {"name":"setStubRun","parameterTypes":["java.lang.Boolean"] }, {"name":"setTowerConfig","parameterTypes":["java.lang.String"] }, {"name":"setUserSecrets","parameterTypes":["java.util.List"] }, {"name":"setWorkDir","parameterTypes":["java.lang.String"] }, {"name":"setWorkspaceSecrets","parameterTypes":["java.util.List"] }]
29502951
},
29512952
{
29522953
"name":"io.seqera.tower.model.LaunchActionRequest",
@@ -3195,7 +3196,7 @@
31953196
"allDeclaredFields":true,
31963197
"allDeclaredMethods":true,
31973198
"allDeclaredConstructors":true,
3198-
"methods":[{"name":"<init>","parameterTypes":[] }, {"name":"setPassphrase","parameterTypes":["java.lang.String"] }, {"name":"setPrivateKey","parameterTypes":["java.lang.String"] }]
3199+
"methods":[{"name":"<init>","parameterTypes":[] }, {"name":"getDiscriminator","parameterTypes":[] }, {"name":"getPassphrase","parameterTypes":[] }, {"name":"getPrivateKey","parameterTypes":[] }, {"name":"setPassphrase","parameterTypes":["java.lang.String"] }, {"name":"setPrivateKey","parameterTypes":["java.lang.String"] }]
31993200
},
32003201
{
32013202
"name":"io.seqera.tower.model.SecurityKeys",
@@ -3416,7 +3417,7 @@
34163417
"allDeclaredFields":true,
34173418
"allDeclaredMethods":true,
34183419
"allDeclaredConstructors":true,
3419-
"methods":[{"name":"<init>","parameterTypes":[] }, {"name":"getComputeEnvId","parameterTypes":[] }, {"name":"getConfigProfiles","parameterTypes":[] }, {"name":"getConfigText","parameterTypes":[] }, {"name":"getDateCreated","parameterTypes":[] }, {"name":"getEntryName","parameterTypes":[] }, {"name":"getHeadJobCpus","parameterTypes":[] }, {"name":"getHeadJobMemoryMb","parameterTypes":[] }, {"name":"getId","parameterTypes":[] }, {"name":"getLabelIds","parameterTypes":[] }, {"name":"getMainScript","parameterTypes":[] }, {"name":"getOptimizationId","parameterTypes":[] }, {"name":"getOptimizationTargets","parameterTypes":[] }, {"name":"getParamsText","parameterTypes":[] }, {"name":"getPipeline","parameterTypes":[] }, {"name":"getPostRunScript","parameterTypes":[] }, {"name":"getPreRunScript","parameterTypes":[] }, {"name":"getPullLatest","parameterTypes":[] }, {"name":"getResume","parameterTypes":[] }, {"name":"getRevision","parameterTypes":[] }, {"name":"getRunName","parameterTypes":[] }, {"name":"getSchemaName","parameterTypes":[] }, {"name":"getSessionId","parameterTypes":[] }, {"name":"getStubRun","parameterTypes":[] }, {"name":"getTowerConfig","parameterTypes":[] }, {"name":"getUserSecrets","parameterTypes":[] }, {"name":"getWorkDir","parameterTypes":[] }, {"name":"getWorkspaceSecrets","parameterTypes":[] }]
3420+
"methods":[{"name":"<init>","parameterTypes":[] }, {"name":"getComputeEnvId","parameterTypes":[] }, {"name":"getConfigProfiles","parameterTypes":[] }, {"name":"getConfigText","parameterTypes":[] }, {"name":"getDateCreated","parameterTypes":[] }, {"name":"getEntryName","parameterTypes":[] }, {"name":"getHeadJobCpus","parameterTypes":[] }, {"name":"getHeadJobMemoryMb","parameterTypes":[] }, {"name":"getId","parameterTypes":[] }, {"name":"getLabelIds","parameterTypes":[] }, {"name":"getLaunchContainer","parameterTypes":[] }, {"name":"getMainScript","parameterTypes":[] }, {"name":"getOptimizationId","parameterTypes":[] }, {"name":"getOptimizationTargets","parameterTypes":[] }, {"name":"getParamsText","parameterTypes":[] }, {"name":"getPipeline","parameterTypes":[] }, {"name":"getPostRunScript","parameterTypes":[] }, {"name":"getPreRunScript","parameterTypes":[] }, {"name":"getPullLatest","parameterTypes":[] }, {"name":"getResume","parameterTypes":[] }, {"name":"getRevision","parameterTypes":[] }, {"name":"getRunName","parameterTypes":[] }, {"name":"getSchemaName","parameterTypes":[] }, {"name":"getSessionId","parameterTypes":[] }, {"name":"getStubRun","parameterTypes":[] }, {"name":"getTowerConfig","parameterTypes":[] }, {"name":"getUserSecrets","parameterTypes":[] }, {"name":"getWorkDir","parameterTypes":[] }, {"name":"getWorkspaceSecrets","parameterTypes":[] }, {"name":"setComputeEnvId","parameterTypes":["java.lang.String"] }, {"name":"setDateCreated","parameterTypes":["java.time.OffsetDateTime"] }, {"name":"setId","parameterTypes":["java.lang.String"] }, {"name":"setPipeline","parameterTypes":["java.lang.String"] }, {"name":"setPullLatest","parameterTypes":["java.lang.Boolean"] }, {"name":"setResume","parameterTypes":["java.lang.Boolean"] }, {"name":"setStubRun","parameterTypes":["java.lang.Boolean"] }, {"name":"setUserSecrets","parameterTypes":["java.util.List"] }, {"name":"setWorkDir","parameterTypes":["java.lang.String"] }, {"name":"setWorkspaceSecrets","parameterTypes":["java.util.List"] }]
34203421
},
34213422
{
34223423
"name":"io.seqera.tower.model.WorkflowLaunchResponse",

‎src/main/java/io/seqera/tower/cli/commands/datastudios/AddCmd.java

+68
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,68 @@
1+
/*
2+
* Copyright 2021-2023, Seqera.
3+
*
4+
* Licensed under the Apache License, Version 2.0 (the "License");
5+
* you may not use this file except in compliance with the License.
6+
* You may obtain a copy of the License at
7+
*
8+
* http://www.apache.org/licenses/LICENSE-2.0
9+
*
10+
* Unless required by applicable law or agreed to in writing, software
11+
* distributed under the License is distributed on an "AS IS" BASIS,
12+
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13+
* See the License for the specific language governing permissions and
14+
* limitations under the License.
15+
*
16+
*/
17+
18+
package io.seqera.tower.cli.commands.datastudios;
19+
20+
import io.seqera.tower.cli.commands.global.WorkspaceOptionalOptions;
21+
import picocli.CommandLine;
22+
23+
import java.nio.file.Path;
24+
25+
@CommandLine.Command(
26+
name = "add",
27+
description = "Add new data studio."
28+
)
29+
public class AddCmd extends AbstractStudiosCmd{
30+
31+
@CommandLine.Option(names = {"-n", "--name"}, description = "Data Studio name.", required = true)
32+
public String name;
33+
34+
@CommandLine.Option(names = {"-d", "--description"}, description = "Data studio description.")
35+
public String description;
36+
37+
@CommandLine.Mixin
38+
public WorkspaceOptionalOptions workspace;
39+
40+
// completion candidates?
41+
// preprocessor ?
42+
@CommandLine.Option(names = {"-t", "--template"}, description = "Data studio template container image. Available templates can be listed with 'studios templates' command", required = true)
43+
public String template;
44+
45+
// add template endpoint
46+
47+
48+
@CommandLine.Option(names = {"-c", "--compute-env"}, description = "Compute environment name.", required = true)
49+
public String computeEnv;
50+
51+
@CommandLine.Option(names = {"--gpu"}, description = "The number of GPUs allocated to the data studio, defaults to 0", defaultValue = "0")
52+
public String gpu;
53+
54+
@CommandLine.Option(names = {"--cpu"}, description = "The number of CPUs allocated to the data studio, defaults to 2", defaultValue = "2")
55+
public String cpu;
56+
57+
@CommandLine.Option(names = {"--memory"}, description = "The maximum memory allocated to the data studio, defaults to 8192", defaultValue = "8192")
58+
public String memory;
59+
60+
//mounted data ????
61+
62+
// start as new - how to model it???
63+
@CommandLine.Option(names = {"--conda-env-yml", "--conda-env-yaml"}, description = "Path to a YAML env file with Conda packages to be installed in the Data Studio environment.")
64+
public Path condaEnv;
65+
66+
@CommandLine.Option(names = {"-a", "--autoStart"}, description = "Create Data Studio and start it immediately, defaults to true", defaultValue = "true")
67+
public Boolean autoStart;
68+
}

0 commit comments

Comments
 (0)