example1

Summary

This example shows how to access a private container repository in your Nextflow pipeline using the Wave service.

Pipeline script

process foo {
  container 'docker.io/pditommaso/my-secret-container:latest'
  debug true

  """
  my-secret-script.sh
  """
}

workflow { 
  foo()
}

Nextflow config

docker {
  enabled = true
} 

tower {
  accessToken = "$TOWER_ACCESS_TOKEN"
}

In the above script, replace the container image with your own private repository.

Run it

nextflow run demo.nf