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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(ggplot_add,base)
S3method(ggplot_add,cnv)
S3method(ggplot_add,feature)
S3method(ggplot_add,gc)
S3method(ggplot_add,gene)
S3method(ggplot_add,ideogram)
S3method(ggplot_add,link)
S3method(ggplot_add,peak)
S3method(ggplot_add,tad)
S3method(ggplot_add,transcript)
export(FormatTrack)
export(GetConsensusPeak)
export(GetPlotData)
export(LoadTrackFile)
export(geom_arrows)
export(geom_base)
export(geom_cnv)
export(geom_coverage)
export(geom_feature)
export(geom_gc)
export(geom_gene)
export(geom_ideogram)
export(geom_link)
export(geom_peak)
export(geom_protein)
export(geom_tad)
export(geom_transcript)
export(ggcoverage)
export(ggprotein)
export(theme_aa)
export(theme_base)
export(theme_base2)
export(theme_cnv)
export(theme_coverage)
export(theme_coverage2)
export(theme_feature)
export(theme_gc)
export(theme_gene)
export(theme_ideogram)
export(theme_link)
export(theme_peak)
export(theme_protein)
export(theme_protein2)
export(theme_tad)
export(theme_tad2)
export(theme_transcript)
importFrom(BiocParallel,MulticoreParam)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,register)
importFrom(Biostrings,getSeq)
importFrom(Biostrings,letterFrequency)
importFrom(Biostrings,readAAStringSet)
importFrom(Biostrings,readDNAStringSet)
importFrom(Biostrings,translate)
importFrom(GenomeInfoDb,"seqlengths<-")
importFrom(GenomeInfoDb,genome)
importFrom(GenomeInfoDb,seqlengths)
importFrom(GenomeInfoDb,seqnames)
importFrom(GenomicAlignments,alphabetFrequencyFromBam)
importFrom(GenomicAlignments,coverage)
importFrom(GenomicAlignments,readGAlignments)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,end)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(GenomicRanges,reduce)
importFrom(GenomicRanges,setdiff)
importFrom(GenomicRanges,start)
importFrom(GenomicRanges,trim)
importFrom(IRanges,IRanges)
importFrom(IRanges,findOverlaps)
importFrom(IRanges,subsetByOverlaps)
importFrom(Rsamtools,ScanBamParam)
importFrom(Rsamtools,indexBam)
importFrom(dplyr,"%>%")
importFrom(dplyr,all_of)
importFrom(dplyr,arrange)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,summarize)
importFrom(ggh4x,elem_list_rect)
importFrom(ggh4x,facet_wrap2)
importFrom(ggh4x,strip_themed)
importFrom(ggpattern,geom_col_pattern)
importFrom(ggpattern,scale_pattern_fill_manual)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,annotate)
importFrom(ggplot2,arrow)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,cut_width)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,expansion)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_curve)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_label)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_polygon)
importFrom(ggplot2,geom_rect)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_step)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggplot_add)
importFrom(ggplot2,labs)
importFrom(ggplot2,margin)
importFrom(ggplot2,rel)
importFrom(ggplot2,scale_color_gradientn)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,unit)
importFrom(ggrepel,geom_text_repel)
importFrom(grDevices,col2rgb)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,grey)
importFrom(gridExtra,tableGrob)
importFrom(gridExtra,ttheme_default)
importFrom(methods,extends)
importFrom(patchwork,wrap_plots)
importFrom(rlang,.data)
importFrom(rlang,as_label)
importFrom(rtracklayer,GRangesForUCSCGenome)
importFrom(rtracklayer,browserSession)
importFrom(rtracklayer,getTable)
importFrom(rtracklayer,import)
importFrom(rtracklayer,tableName)
importFrom(rtracklayer,ucscGenomes)
importFrom(rtracklayer,ucscTableQuery)
importFrom(scales,comma)
importFrom(scales,rescale)
importFrom(scales,scientific)
importFrom(stats,as.formula)
importFrom(stats,reshape)
importFrom(utils,menu)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(utils,tail)
importFrom(utils,write.table)