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lines changed Original file line number Diff line number Diff line change @@ -113,10 +113,10 @@ The _examples_ folder contains an example VCF file. It also contains a *gvanno*
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This command will run the Docker-based * gvanno* workflow and produce the following output files in the _ examples_ folder:
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- 1 . __ example_gvanno.pass .vcf.gz (.tbi)__ - Bgzipped VCF file with rich set of functional/clinical annotations
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- 2 . __ example_gvanno.pass .tsv.gz__ - Compressed TSV file with rich set of functional/clinical annotations
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+ 1 . __ example_gvanno_pass_grch37 .vcf.gz (.tbi)__ - Bgzipped VCF file with rich set of functional/clinical annotations
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+ 2 . __ example_gvanno_pass_grch37 .tsv.gz__ - Compressed TSV file with rich set of functional/clinical annotations
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- Similar files are produced for all variants, not only variants with a * PASS* designation.
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+ Similar files are produced for all variants, not only variants with a * PASS* designation in the VCF FILTER column .
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Documentation of the various variant and gene annotations should be interrogated from the header of the annotated VCF file.
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