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How to get a full OTU table? #6

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sebastianavalon opened this issue Oct 21, 2024 · 1 comment
Open

How to get a full OTU table? #6

sebastianavalon opened this issue Oct 21, 2024 · 1 comment

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@sebastianavalon
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Hi,
I have transposed the kraken files to the OTU table, unfortunately even though I had a lot of unidentified OTUs to the genus, it skipped them. Is it possible to perform an analysis that creates correct OTU tables, i.e. compiling the number of OTUs for the last identified taxonomic level?

Nowadays, a metataxonomic compilation only for a selected taxonomic level is almost worthless, and I still can't find any user-friendly functionality that creates full OTU tables.

Would you be able to solve this issue?

Best,
Sebastian
@sipost1
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sipost1 commented Oct 21, 2024

Hi, yes sure I'll take a look when I have the time

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@sipost1 @sebastianavalon