prediction tools for neoantigens from gene fusions

[dlaehnemann]

Tools / pipelines that can do this:

• INTEGRATE-neo
• pVACfuse (pVACtools, uses INTEGRATE-neo)
• NeoepitopePred
• Antigen.garnish
• Epidisco

TODO: Further check which ones are actual tools and for pipelines check which tool they actually use. Then, annotate with repo, license and last commit.

Fusion-detection possible with more tools, e.g.:

• STARfusion
• fusion-catcher
• pisley (kallisto)