diff --git a/README.md b/README.md index b73ceef..ee1b341 100644 --- a/README.md +++ b/README.md @@ -10,6 +10,8 @@ git clone https://github.com/stevekm/reference-annotations.git cd reference-annotations ``` +(if you do not have BEDOPS installed and in your PATH you can also run the `make bin` recipe to download it in the current dir) + Generate the desired annotation files from the available entries: - `all`, `gencode-hg19`, `gencode-hg38`, `gencode-hg38v41`, `ensembl-hg19`, `ensembl-hg38`, `ensembl-mm10` @@ -62,7 +64,7 @@ Intermediate files are removed by default. If you want to keep them, then commen - `bash` shell -- [BEDOPS](http://bedops.readthedocs.io/en/latest/content/reference/file-management/conversion/gtf2bed.html) +- [BEDOPS](http://bedops.readthedocs.io/en/latest/content/reference/file-management/conversion/gtf2bed.html) # Resources