Issue with Missing genotype_loci.json and TypeError in d4_stats.py

[Huangwenxuan666888]

Hello,

I noticed that the genotype_loci.json file is missing from the d4_to_windowed_cvg - configs folder. Could you please provide this file, or at least describe its expected format?

When I try to create this file myself, I encounter the following error:

File "d4_stats.py", line 57, in get_loci_by_contig
contig = inf['contig']
TypeError: string indices must be integers

I suspect the issue may be related to the structure of the genotype_loci.json file I created. Could you provide guidance on how this file should be formatted to avoid this error?

Thanks in advance!