I run into this error RAxML_bestTree.RECON (No such file or directory)

[akang1414]

Hi,
I am running into following error while running treesub on a server.
[1/6] Copying file from '/home/my/data.fasta' to '/home/my/alignment'.
Successfully copied file.

[2/6] Converting FASTA file 'alignment' to PHYLIP file 'alignment.phylip'.
Alignment has 336 sequences, each with 1751 sites.
Successfully converted FASTA file.

[3/6] Running RAxML application. Output from RAxML:
couldn't execute "/home/my/standard-RAxML-master/WindowsExecutables_v8.2.10/raxmlHPC.exe": permission denied
while executing
"spawn -noecho /home/my/standard-RAxML-master/WindowsExecutables_v8.2.10/raxmlHPC.exe -p -m GTRGAMMA -T 2 -# 10 -s alignment.raxml.phylip -n RECON"
("eval" body line 1)
invoked from within
"eval [list spawn -noecho] $argv"
invoked from within
"if {[string compare [lindex $argv 0] "-p"] == 0} {
# pipeline
set stty_init "-echo"
eval [list spawn -noecho] [lrange $argv 1 end]
clo..."
(file "/usr/bin/unbuffer" line 13)

Successfully ran RAxML.

[4/6] Rooting tree by outgroup sequence.
ERROR: java.io.FileNotFoundException: /home/my/RAxML_bestTree.RECON (No such file or directory)
/home/my/RAxML_bestTree.RECON (No such file or directory)

[tamuri]

It looks like you're running the program on a Linux machine but pointing to the Windows RAxML executable? That won't work. You need to provide the path to the Linux RAxML executable.