Remove restric deps (#84)

Author: moinfar

CHANGELOG.md

@@ -17,6 +17,9 @@ and this project adheres to [Semantic Versioning][].
 - Allow subset reconstruction
 - Allow gradient scaling in the last layer
 
+### Removed
+- Remove restrict dependencies. To ensure compatibility with old packages run for example: `uvx --exclude-newer 2024-01-01 hatch run pytest`
+
 ### Changed
 
 - Minor code improvements

pyproject.toml

@@ -67,21 +67,6 @@ optional-dependencies.doc = [
   "sphinxcontrib-katex",
   "sphinxext-opengraph",
 ]
-optional-dependencies.restrict = [
-  "anndata>=0.10.2,<0.11",
-  "jax<=0.4.20",
-  "jaxlib<=0.4.20",
-  "lightning>=2,<2.1",
-  "numpy>=1.16.1,<2",      # for np.linspace
-  "pandas>=1.2",
-  "scanpy==1.9.5",
-  "scikit-learn>=1.5.1",
-  "scipy>=1.11.3,<1.13",
-  "scvi-tools==1.0.4",
-  "session-info2",
-  "torch>=2.1,<2.4",
-  "urllib3<2",
-]
 optional-dependencies.test = [
   "coverage>=7.10",
   "pytest",
@@ -120,11 +105,6 @@ python = [ "3.10", "3.13" ]
 deps = [ "pre" ]
 python = [ "3.13" ]
 
-# Test with restricted dependencies (older versions for compatibility)
-[[tool.hatch.envs.hatch-test.matrix]]
-features = [ "test", "restrict" ]
-python = [ "3.10" ]
-
 [tool.hatch.envs.hatch-test]
 features = [ "dev", "test" ]