setup.py

from setuptools import find_packages, setup

import versioneer

author = "David S. Fischer, Florian R. Hölzlwimmer, Sabrina Richter"
author_email = "david.fischer@helmholtz-muenchen.de"
description = "Fast and scalable fitting of over-determined generalized-linear models (GLMs)"

with open("README.md", "r") as fh:
    long_description = fh.read()

setup(
    name="batchglm",
    author=author,
    author_email=author_email,
    description=description,
    long_description=long_description,
    long_description_content_type="text/markdown",
    packages=find_packages(),
    install_requires=["anndata", "numpy>=1.16.4", "scipy>=1.2.1", "pandas", "dask", "toolz", "patsy", "sparse", "dask"],
    extras_require={
        "plotting_deps": ["matplotlib", "seaborn"],
        "docs": [
            "sphinx",
            "sphinx-autodoc-typehints",
            "sphinx_rtd_theme",
            "jinja2",
            "docutils",
        ],
    },
    version=versioneer.get_version(),
    cmdclass=versioneer.get_cmdclass(),
)