[pre-commit.ci] pre-commit autoupdate (#147)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Philipp A <[email protected]>

Author: pre-commit-ci[bot]

.pre-commit-config.yaml

@@ -4,7 +4,7 @@ repos:
     hooks:
       - id: trailing-whitespace
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.3.7
+    rev: v0.4.1
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix]

pyproject.toml

@@ -31,6 +31,7 @@ test = [
     'coverage-rich',
     'anyconfig[toml] >=0.14', # coverage-rich uses anyconfig
     'legacy-api-wrap',
+    'defusedxml',  # sphinx[test] would also pull in cython
 ]
 doc = [
     'scanpydoc[typehints,theme]',
@@ -76,7 +77,7 @@ exempt-modules = []
 length-sort = true
 lines-after-imports = 2
 known-first-party = ['scanpydoc']
-required-imports = ["from __future__ import annotations"]
+required-imports = ['from __future__ import annotations']
 [tool.ruff.lint.pydocstyle]
 convention = 'numpy'
 
@@ -122,14 +123,14 @@ filterwarnings = [
 ]
 
 [tool.coverage.run]
-source_pkgs = ["scanpydoc"]
+source_pkgs = ['scanpydoc']
 [tool.coverage.paths]
-scanpydoc = ["src/scanpydoc"]
+scanpydoc = ['src/scanpydoc']
 [tool.coverage.report]
 exclude_lines = [
-  "no cov",
-  "if __name__ == .__main__.:",
-  "if TYPE_CHECKING:",
+  'no cov',
+  'if __name__ == .__main__.:',
+  'if TYPE_CHECKING:',
 ]
 
 [build-system]

src/scanpydoc/definition_list_typed_field.py

@@ -11,7 +11,10 @@
 
 from sphinx import addnodes
 from docutils import nodes
-from sphinx.domains.python import PyObject, PyTypedField
+from sphinx.domains.python import (  # type: ignore[attr-defined,unused-ignore]
+    PyObject,
+    PyTypedField,
+)
 
 from . import metadata, _setup_sig