Hi, I would like to integrate single-cell multiomics data (RNA+ATAC) so that I can get some better 2-dimensional embeddings of the data (hoping working better than harmony, etc).
So, I was following your one of the examples "Integration and reference mapping with multigrate" and I got the "AttributeError: module 'scarches.models' has no attribute 'organize_multiome_anndatas'".
Have any ideas why does scarches.models has no attribute of that? I've installed scArches from your environment using yaml file.
Here's my code running:
adata = sca.models.organize_multiome_anndatas(
adatas = [[rna_, None], [None, atac_]], # a list of anndata objects per modality, RNA-seq always goes first
layers = [['counts', None], [None, 'log-norm']], # if need to use data from .layers, if None use .X
)
Thanks.
Somi