Refactor Spectrum schema, and spectrum submit form #1150
Workflow file for this run
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| name: CI | |
| # Enable Buildkit and let compose use it to speed up image building | |
| env: | |
| DOCKER_BUILDKIT: 1 | |
| COMPOSE_DOCKER_CLI_BUILD: 1 | |
| # postgres://user:password@host:port/database | |
| DATABASE_URL: "postgres://postgres:postgres@localhost:5432/postgres" | |
| UV_FROZEN: 1 | |
| NCBI_API_KEY: ${{ secrets.NCBI_API_KEY }} | |
| on: | |
| pull_request: | |
| branches: ["develop", "main"] | |
| push: | |
| branches: ["develop", "main"] | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| jobs: | |
| typing: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Code Repository | |
| uses: actions/checkout@v5 | |
| - uses: astral-sh/setup-uv@v7 | |
| with: | |
| enable-cache: true | |
| - name: Run basedpyright | |
| run: uv run --group typing --no-dev basedpyright | |
| typing-typescript: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v5 | |
| - uses: pnpm/action-setup@v4 | |
| with: | |
| run_install: false | |
| - uses: actions/setup-node@v6 | |
| with: | |
| node-version-file: package.json | |
| cache: "pnpm" | |
| - name: Install node Dependencies | |
| run: pnpm install | |
| - name: Run TypeScript type checking | |
| run: pnpm typecheck | |
| check-migrations: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Code Repository | |
| uses: actions/checkout@v5 | |
| - uses: astral-sh/setup-uv@v7 | |
| with: | |
| enable-cache: true | |
| - name: Check for new migrations | |
| run: uv run backend/manage.py makemigrations --check --noinput | |
| test: | |
| runs-on: ubuntu-latest | |
| services: | |
| postgres: | |
| image: postgres:15 | |
| ports: | |
| - 5432:5432 | |
| env: | |
| POSTGRES_PASSWORD: postgres | |
| steps: | |
| - uses: actions/checkout@v5 | |
| - uses: astral-sh/setup-uv@v7 | |
| with: | |
| version: latest | |
| enable-cache: true | |
| - uses: pnpm/action-setup@v4 | |
| with: | |
| run_install: false | |
| - uses: actions/setup-node@v6 | |
| with: | |
| node-version-file: package.json | |
| cache: "pnpm" | |
| - name: Install node Dependencies | |
| run: pnpm install | |
| - name: Test | |
| run: | | |
| uv sync --group test --no-dev | |
| uv run --no-sync pytest -n auto -v --cov --cov-report=xml | |
| - name: coverage | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| test-e2e: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| browser: [chromium, firefox, webkit] | |
| services: | |
| postgres: | |
| image: postgres:15 | |
| ports: | |
| - 5432:5432 | |
| env: | |
| POSTGRES_PASSWORD: postgres | |
| steps: | |
| - uses: actions/checkout@v5 | |
| - uses: astral-sh/setup-uv@v7 | |
| with: | |
| version: latest | |
| enable-cache: true | |
| - uses: pnpm/action-setup@v4 | |
| with: | |
| run_install: false | |
| - name: Install Node.js | |
| uses: actions/setup-node@v6 | |
| with: | |
| node-version-file: package.json | |
| cache: "pnpm" | |
| - name: Install node Dependencies | |
| run: pnpm install | |
| - run: uv sync --group test --no-dev | |
| - name: Ensure browsers are installed | |
| run: uv run --no-sync playwright install ${{ matrix.browser }} --with-deps | |
| - name: Test | |
| run: uv run --no-sync pytest backend/tests_e2e/ --create-db --migrations -v --browser ${{ matrix.browser }} --cov --cov-report=xml --tracing=retain-on-failure | |
| - uses: actions/upload-artifact@v5 | |
| if: ${{ !cancelled() }} | |
| with: | |
| name: playwright-traces-${{ matrix.browser }} | |
| path: test-results/ | |
| - name: coverage | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} |