python-package.yml

name: Conda package (Ubuntu Lab2 and Lab3)

on:
  push:
    branches: [ master ]
  pull_request:
    branches: [ master ]

defaults:
  run:
    shell: bash -l {0}

jobs:
  build:
    runs-on: ubuntu-latest

    steps:
    - name: Checkout
      uses: actions/checkout@v2

    - name: Install Conda environment with Micromamba
      uses: mamba-org/provision-with-micromamba@main
      with:
        environment-name: beakerx_tabledisplay
        environment-file: configuration.yml
        channels: conda-forge

    - name: Build BeakerX tabledisplay
      run: (cd beakerx_tabledisplay; pip install .)

    - name: Check installation files (nbextension and lab3 extension)
      run: |
        test -d $CONDA_PREFIX/share/jupyter/nbextensions/beakerx_tabledisplay
        test -f $CONDA_PREFIX/share/jupyter/nbextensions/beakerx_tabledisplay/extension.js
        test -f $CONDA_PREFIX/share/jupyter/nbextensions/beakerx_tabledisplay/index.js
        test -d $CONDA_PREFIX/share/jupyter/labextensions/@beakerx/beakerx-tabledisplay
        test -f $CONDA_PREFIX/share/jupyter/labextensions/@beakerx/beakerx-tabledisplay/package.json

    - name: Build wheel
      run: |
        cd beakerx_tabledisplay
        python setup.py sdist bdist_wheel
        cd dist
        sha256sum * | tee SHA256SUMS

    - name: Upload builds
      uses: actions/upload-artifact@v2
      with:
        name: dist ${{ github.run_number }}
        path: ./beakerx_tabledisplay/dist

  tests:
    runs-on: ubuntu-latest
    needs: [build]

    strategy:
      fail-fast: false

    steps:
    - name: Checkout
      uses: actions/checkout@v2

    - name: Checkout beakerx_base repo
      uses: actions/checkout@v2
      with:
        repository: twosigma/beakerx_base
        path: beakerx_base

    - name: Checkout beakerx_tests repo
      uses: actions/checkout@v2
      with:
        repository: twosigma/beakerx_tests
        path: beakerx_tests

    - uses: actions/download-artifact@v2
      with:
        name: dist ${{ github.run_number }}
        path: ./dist

    - name: Install Conda environment with Micromamba
      uses: mamba-org/provision-with-micromamba@main
      with:
        environment-name: beakerx_tabledisplay
        environment-file: configuration.yml
        channels: conda-forge

    - name: Install the wheel
      run: |
        cd dist
        pip install -vv beakerx_tabledisplay*.whl

    - name: Check installation files (nbextension and lab extension)
      run: |
        test -d $CONDA_PREFIX/share/jupyter/nbextensions/beakerx_tabledisplay
        test -f $CONDA_PREFIX/share/jupyter/nbextensions/beakerx_tabledisplay/extension.js
        test -f $CONDA_PREFIX/share/jupyter/nbextensions/beakerx_tabledisplay/index.js
        test -d $CONDA_PREFIX/share/jupyter/labextensions/@beakerx/beakerx-tabledisplay
        test -f $CONDA_PREFIX/share/jupyter/labextensions/@beakerx/beakerx-tabledisplay/package.json

    - name: Check nbextension and labextension
      run: |
        jupyter labextension list 2>&1 | grep -ie "@beakerx/beakerx-tabledisplay.*enabled.*ok" -

    - name: Run e2e tests (table v1)
      shell: bash -l {0}
      run: |
        cd $GITHUB_WORKSPACE/beakerx_tests/autotests
        chmod +x gradlew
        pip install psutil
        python ci_tests.py --app=lab --tbl=v1 --exp=yes --tst=python.Table*

    - name: Archive screenshot results
      uses: actions/upload-artifact@v1
      if: always()
      with:
        name: screenshots
        path: ${{ github.workspace }}/beakerx_tests/autotests/resources/img/python