.gitignore

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]

# C extensions
*.so

# Distribution / packaging
.Python
#env/
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
dask-worker-space/
*.egg-info/
.installed.cfg
*.egg
*.err
*.out
*.db
*.py*.sh
.DS_Store

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*,cover
*.pdf

# Translations
*.mo
*.pot

# Django stuff:
*.log

# Sphinx documentation
docs/_build/

# PyBuilder
target/

# DotEnv configuration
.env
ditto-env

# conda
.conda

# Database
*.db
*.rdb
*.tbi

# Pycharm
.idea

# Jupyter NB Checkpoints
.ipynb_checkpoints/

# exclude data from source control by default
/data/

#snakemake or nextflow
.snakemake/
.nextflow/
.nextflow*

#logs
logs/

# vscode
.vscode/

# .java/fonts dir get created when creating fastqc conda env
.java/