New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add support for `HISAT2` aligner #88

Open

yashpatel6 opened this issue Feb 2, 2023 · 0 comments

Assignees

Collaborator

yashpatel6 commented Feb 2, 2023

          Yeah currently, the metapipeline expects and uses BWA-MEM2 (it was initially set up like this). We can update to add support for running HISAT2 and using that BAM for downstream pipelines if a user opts for it

Originally posted by @yashpatel6 in #87 (comment)

The text was updated successfully, but these errors were encountered:

yashpatel6 self-assigned this

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment