Merge pull request #69 from uclahs-cds/nzeltser-release-3.0.0

Release v3.0.0

Author: alkaZeltser

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: ApplyPolygenicScore
 Type: Package
 Title: Utilities for the Application of a Polygenic Score to a VCF
-Version: 2.0.0
+Version: 3.0.0
 Authors@R: c(
     person('Paul', 'Boutros', role = 'cre', email = '[email protected]'),
     person('Nicole', 'Zeltser', role = 'aut', comment = c(ORCID = '0000-0001-7246-2771')),

NAMESPACE

@@ -26,7 +26,8 @@ importFrom(
     'lm',
     'na.omit',
     'predict',
-    'quantile'
+    'quantile',
+    'setNames'
     );
 importFrom(
     'utils',

NEWS.md

@@ -1,4 +1,8 @@
 # Unreleased
+
+# ApplyPolygenicScore 3.0.0 (2024-12-02)
+
+## Added
 * Added handling of overlapping deletion allele notation
 * Added secondary PGS/VCF variant matching method using rsID after first attempt with genomic coordinates
 * Added checks for rsID as an optional column in input PGS weight files