diff --git a/CHANGELOG.md b/CHANGELOG.md index 135a650..3cc74c4 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -8,9 +8,15 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm --- ## [Unreleased] + +--- + +## [10.0.1] - 2024-04-15 ### Changed - Replace workflow diagram with PlantUML version - Update PlantUML action to v1.0.1 +### Fixed +- Resolve intervals before splitting to allow for index discovery --- diff --git a/module/split-intervals.nf b/module/split-intervals.nf index 5fc0552..8fa776b 100644 --- a/module/split-intervals.nf +++ b/module/split-intervals.nf @@ -42,7 +42,7 @@ process run_SplitIntervals_GATK { set -euo pipefail gatk SplitIntervals \ -R ${reference} \ - -L ${intervals} \ + -L "\$(realpath ${intervals})" \ --scatter-count ${params.scatter_count} \ ${subdivision_mode} \ ${params.split_intervals_extra_args} \ diff --git a/nextflow.config b/nextflow.config index d194c54..b696916 100644 --- a/nextflow.config +++ b/nextflow.config @@ -5,5 +5,5 @@ manifest { name = 'call-gSNP' author = ["Yash Patel", "Shu Tao", "Stefan Eng"] description = 'Nextflow pipeline to call germline short variants in single or normal-tumour paired mode' - version = '10.0.0' + version = '10.0.1' }