.gitignore

# System files
*.log
.DS_Store

# R
.Rhistory
.Rapp.history
.Rproj.user
*.RData
*.rd[as]

# Python
__pycache__/
.pytest_cache/
.Python
pip-log.txt
pip-delete-this-directory.txt
*.py[cod]
*$py.class
venv
.venv
.env

# VScode
.vscode

# Nextflow
work/
.nextflow/
*.nextflow.log*

## Molecular files

# Array file
*.CEL
*.cel
*.OSCHP

# Sequence file (e.g. Reference genome)
*.fasta
*.fa
*.fai
*.dict
*.gtf


# FASTQ file
*.fq
*.fastq

# Proteomics file
*.raw
*.mzML
*.mzXML
*.mgf
*.idXML
*.consensusXML
*.featureXML
*.mzid
*.mzData
*.dta
*.dta2d

# DNA/RNA alignment file
*.sam
*.bam
*.bai
*.cram
*.crai

# Variant file
*.bcf
*.csi
*.vcf
*.tbi
*.maf
*.idx

# Compressed file
*.gz
*.tar
*.zip
*.bz2

# Image file
*.jpeg
*.jpg
*.png
*.tif
*.tiff
*.gif

# Document file
*.pdf
*.rtf
*.doc
*.docx
*.xls
*.xlsx
*.ppt
*.pptx

# Temporary file
*.tmp
*.temp
*.xlk
*.~vsd*