From bc655dc6d0624d808920df7354d8a0236f62a345 Mon Sep 17 00:00:00 2001 From: mchernigovskaya Date: Mon, 14 Oct 2024 22:49:05 +0200 Subject: [PATCH] Update TCR_motifs.rst --- docs_source/usecases/TCR_motifs.rst | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs_source/usecases/TCR_motifs.rst b/docs_source/usecases/TCR_motifs.rst index 43d37c70..e4ab3a3c 100644 --- a/docs_source/usecases/TCR_motifs.rst +++ b/docs_source/usecases/TCR_motifs.rst @@ -282,8 +282,8 @@ VDJdb provides a database of CDR3 motifs, which you can access at https://vdjdb. The figure below showcases a SARS-CoV-2-specific motif from VDJdb. This SARS-CoV-2-specific TCRs must have 15 amino acids long CDR3 and use the germline genes TRBV27*01 and TRBJ2-1*1. -.. image:: ../_static/figures/usecase_VDJdb_motifs_length_distribution.png - :width: 500 +.. image:: ../_static/figures/VDJdb_CDR3_database.png + :width: 1500 After clicking the Export button, you will receive a TSV file containing all the members representing the given motif. To convert the set of CDR3s into a PWM compatible with LIgO, you can use the following code: