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lines changed Original file line number Diff line number Diff line change 11[package ]
22name = " frag_gene_scan_rs"
3- version = " 1.0.1 "
3+ version = " 1.1.0 "
44authors = [
" Felix Van der Jeugt <[email protected] >" ]
55edition = " 2018"
66license = " GPL-3.0-or-later"
Original file line number Diff line number Diff line change @@ -74,10 +74,10 @@ where:
7474
7575### Additional options
7676
77- * ` -m meta_file ` , ` -n nucleotide_file ` and ` -a aa_file ` can be used to
78- write output to specific files, instead of having the program create
79- filenames with predetermined extentions. These take precedence over
80- the ` -o ` option.
77+ * ` -m meta_file ` , ` -n nucleotide_file ` , ` -a aa_file ` and ` -g gff_file `
78+ can be used to write output to specific files, instead of having the
79+ program create filenames with predetermined extentions. These take
80+ precedence over the ` -o ` option.
8181
8282* Leaving out the ` -o ` option or using the name ` stdout ` causes
8383 FragGeneScanRs to only write the predicted proteins to standard output.
9797The complete list of options will be printed when running
9898` FragGeneScanRs --help ` .
9999
100- ## Execution time
100+ ## Execution time (version 1.0.0)
101101
102102Benchmarks were done using the ` meta/benchmark.sh ` script on a 16-core
103103Intel(R) Xeon(R) CPU E5-2650 v2 @ 2.60GHz with 195GB RAM. The datasets
@@ -165,7 +165,7 @@ The commands used here are:
165165./FragGeneScanRs -t 454_10 -s example/NC_000913-454.fna -o stdout -w 0 > /dev/null
166166```
167167
168- ## Memory usage
168+ ## Memory usage (version 1.0.0)
169169
170170The figure below shows the memory footprint for multithreaded execution
171171of FGS, FGS+ and FGSrs on long reads (1328 bp). Total memory footprint
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