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Felix Van der Jeugt
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release version 1.1.0
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Cargo.toml

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[package]
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name = "frag_gene_scan_rs"
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version = "1.0.1"
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version = "1.1.0"
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authors = ["Felix Van der Jeugt <[email protected]>"]
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edition = "2018"
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license = "GPL-3.0-or-later"

README.md

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### Additional options
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* `-m meta_file`, `-n nucleotide_file` and `-a aa_file` can be used to
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write output to specific files, instead of having the program create
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filenames with predetermined extentions. These take precedence over
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the `-o` option.
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* `-m meta_file`, `-n nucleotide_file`, `-a aa_file` and `-g gff_file`
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can be used to write output to specific files, instead of having the
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program create filenames with predetermined extentions. These take
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precedence over the `-o` option.
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* Leaving out the `-o` option or using the name `stdout` causes
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FragGeneScanRs to only write the predicted proteins to standard output.
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The complete list of options will be printed when running
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`FragGeneScanRs --help`.
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## Execution time
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## Execution time (version 1.0.0)
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Benchmarks were done using the `meta/benchmark.sh` script on a 16-core
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Intel(R) Xeon(R) CPU E5-2650 v2 @ 2.60GHz with 195GB RAM. The datasets
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./FragGeneScanRs -t 454_10 -s example/NC_000913-454.fna -o stdout -w 0 > /dev/null
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```
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## Memory usage
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## Memory usage (version 1.0.0)
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The figure below shows the memory footprint for multithreaded execution
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of FGS, FGS+ and FGSrs on long reads (1328 bp). Total memory footprint

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