data.csv

Title,Authors,Journal,Year,nSamples,nPositive,Prevalence,HostFamily,HostGenus,Hosts,nSpecies,VirusGenus,VirusSubgenus,VirusStrain,DetectionType,StudyType,DetectionMethod,DetectionMethodSpecific,PCRMethod,GeneTarget,GeneTargetDetailed,Tissue,Sample,Country,State,SamplingSite,Latitude,Longitude,nSamplingTrips,YearDiscrete,MonthsDiscrete,StartYear,StartMonth,EndYear,EndMonth,Summer,Fall,Winter,Spring,TerminalSampling
longitudinal study of age-specific pattern of coronavirus infection in lyle's flying fox (pteropus lylei) in thailand,Wacharapluesadee et al.,Virol J,2018,367,4,0.010899,Pteropodidae,Pteropus,Pteropus lylei,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Thailand,Chonburi,"S1, S2, S3 (pooled)",NA,NA,NA,2012,NA,NA,January,NA,December,1,1,1,1,No
longitudinal study of age-specific pattern of coronavirus infection in lyle's flying fox (pteropus lylei) in thailand,Wacharapluesadee et al.,Virol J,2018,367,64,0.174387,Pteropodidae,Pteropus,Pteropus lylei,1,betacoronavirus,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Thailand,Chonburi,"S1, S2, S3 (pooled)",NA,NA,NA,2012,NA,NA,January,NA,December,1,1,1,1,No
viral diversity of bat communities in human-dominated landscapes in mexico,Rico-Ch‡vez et al.,Veterinaria México OA,2015,253,1,0.003953,Phyllostomidae,Carollia,Carollia sowelli,1,alphacoronavirus,NA,Mex Cov 2,single,cross-sectional,PCR,RT-PCR,single,NA,NA,oropharyngeal,swab,Mexico,Chiapas,Montes Azules,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
viral diversity of bat communities in human-dominated landscapes in mexico,Rico-Ch‡vez et al.,Veterinaria México OA,2015,253,2,0.007905,Phyllostomidae,Dermanura,Dermanura phaeotis,1,betacoronavirus,NA,"Mex Cov 11a (1), Mex Cov 11b (1)",single,cross-sectional,PCR,RT-PCR,single,NA,NA,oropharyngeal,swab,Mexico,Chiapas,Montes Azules,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
viral diversity of bat communities in human-dominated landscapes in mexico,Rico-Ch‡vez et al.,Veterinaria México OA,2015,253,1,0.003953,Phyllostomidae,Lonchorhina,Lonchorhina aurita,1,alphacoronavirus,NA,Mex Cov 3,single,cross-sectional,PCR,RT-PCR,single,NA,NA,"faecal, rectal, or anal",swab,Mexico,Chiapas,Montes Azules,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
viral diversity of bat communities in human-dominated landscapes in mexico,Rico-Ch‡vez et al.,Veterinaria México OA,2015,253,1,0.003953,Phyllostomidae,Artibeus,Artibeus jamaicensis,1,alphacoronavirus,NA,Mex Cov 5a,single,cross-sectional,PCR,RT-PCR,single,NA,NA,"faecal, rectal, or anal",swab,Mexico,Chiapas,Montes Azules,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
viral diversity of bat communities in human-dominated landscapes in mexico,Rico-Ch‡vez et al.,Veterinaria México OA,2015,142,1,0.007042,Phyllostomidae,Artibeus,Artibeus jamaicensis,1,alphacoronavirus,NA,Mex Cov 5a,single,cross-sectional,PCR,RT-PCR,single,NA,NA,"faecal, rectal, or anal",swab,Mexico,Chiapas,Montes Azules,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
viral diversity of bat communities in human-dominated landscapes in mexico,Rico-Ch‡vez et al.,Veterinaria México OA,2015,142,1,0.007042,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,alphacoronavirus,NA,Mex Cov 6,single,cross-sectional,PCR,RT-PCR,single,NA,NA,blood or serum,sera,Mexico,Chiapas,Montes Azules,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
viral diversity of bat communities in human-dominated landscapes in mexico,Rico-Ch‡vez et al.,Veterinaria México OA,2015,293,1,0.003413,Phyllostomidae,Carollia,Carollia sowelli,1,alphacoronavirus,NA,Mex Cov 1,single,cross-sectional,PCR,RT-PCR,single,NA,NA,oropharyngeal,swab,Mexico,Chiapas,Montes Azules,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
viral diversity of bat communities in human-dominated landscapes in mexico,Rico-Ch‡vez et al.,Veterinaria México OA,2015,293,1,0.003413,Phyllostomidae,Carollia,Carollia sowelli,1,alphacoronavirus,NA,Mex Cov 1,single,cross-sectional,PCR,RT-PCR,single,NA,NA,"faecal, rectal, or anal",swab,Mexico,Chiapas,Montes Azules,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
viral diversity of bat communities in human-dominated landscapes in mexico,Rico-Ch‡vez et al.,Veterinaria México OA,2015,152,2,0.013158,Phyllostomidae,Artibeus,Artibeus jamaicensis,1,alphacoronavirus,NA,Mex Cov 5b,single,cross-sectional,PCR,RT-PCR,single,NA,NA,"faecal, rectal, or anal",swab,Mexico,Campeche,Reserva de la Biósfera Calakmul,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
viral diversity of bat communities in human-dominated landscapes in mexico,Rico-Ch‡vez et al.,Veterinaria México OA,2015,152,3,0.019737,Phyllostomidae,Artibeus,Artibeus lituratus,1,alphacoronavirus,NA,Mex Cov 5b,single,cross-sectional,PCR,RT-PCR,single,NA,NA,"faecal, rectal, or anal",swab,Mexico,Campeche,Reserva de la Biósfera Calakmul,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
viral diversity of bat communities in human-dominated landscapes in mexico,Rico-Ch‡vez et al.,Veterinaria México OA,2015,152,1,0.006579,Phyllostomidae,Artibeus,Artibeus lituratus,1,betacoronavirus,NA,Mex Cov 11b,single,cross-sectional,PCR,RT-PCR,single,NA,NA,"faecal, rectal, or anal",swab,Mexico,Campeche,Reserva de la Biósfera Calakmul,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
viral diversity of bat communities in human-dominated landscapes in mexico,Rico-Ch‡vez et al.,Veterinaria México OA,2015,152,1,0.006579,Phyllostomidae,Dermanura,Dermanura phaeotis,1,betacoronavirus,NA,Mex Cov 11b,single,cross-sectional,PCR,RT-PCR,single,NA,NA,"faecal, rectal, or anal",swab,Mexico,Campeche,Reserva de la Biósfera Calakmul,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
viral diversity of bat communities in human-dominated landscapes in mexico,Rico-Ch‡vez et al.,Veterinaria México OA,2015,152,1,0.006579,Mormoopidae,Pteronotus,Pteronotus parnellii,1,betacoronavirus,NA,Mex Cov 10,single,cross-sectional,PCR,RT-PCR,single,NA,NA,"faecal, rectal, or anal",swab,Mexico,Campeche,Reserva de la Biósfera Calakmul,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
viral diversity of bat communities in human-dominated landscapes in mexico,Rico-Ch‡vez et al.,Veterinaria México OA,2015,65,1,0.015385,Phyllostomidae,Carollia,Carollia perspicillata,1,alphacoronavirus,NA,Mex Cov 1,single,cross-sectional,PCR,RT-PCR,single,NA,NA,"faecal, rectal, or anal",swab,Mexico,Campeche,Reserva de la Biósfera Calakmul,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
viral diversity of bat communities in human-dominated landscapes in mexico,Rico-Ch‡vez et al.,Veterinaria México OA,2015,65,3,0.046154,Phyllostomidae,Carollia,Carollia sowelli,1,alphacoronavirus,NA,"Mex Cov 1 (1), Mex Cov 2 (1), Mex Cov 5b (1)",single,cross-sectional,PCR,RT-PCR,single,NA,NA,"faecal, rectal, or anal",swab,Mexico,Campeche,Reserva de la Biósfera Calakmul,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
viral diversity of bat communities in human-dominated landscapes in mexico,Rico-Ch‡vez et al.,Veterinaria México OA,2015,65,1,0.015385,Phyllostomidae,Artibeus,Artibeus jamaicensis,1,alphacoronavirus,NA,Mex Cov 4,single,cross-sectional,PCR,RT-PCR,single,NA,NA,"faecal, rectal, or anal",swab,Mexico,Campeche,Reserva de la Biósfera Calakmul,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
viral diversity of bat communities in human-dominated landscapes in mexico,Rico-Ch‡vez et al.,Veterinaria México OA,2015,65,1,0.015385,Molossidae,Nyctinomops,Nyctinomops laticaudatus,1,betacoronavirus,NA,Mex Cov 9,single,cross-sectional,PCR,RT-PCR,single,NA,NA,"faecal, rectal, or anal",swab,Mexico,Campeche,Reserva de la Biósfera Calakmul,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
viral diversity of bat communities in human-dominated landscapes in mexico,Rico-Ch‡vez et al.,Veterinaria México OA,2015,102,1,0.009804,Phyllostomidae,Carollia,Carollia perspicillata,1,alphacoronavirus,NA,Mex Cov 1,single,cross-sectional,PCR,RT-PCR,single,NA,NA,"faecal, rectal, or anal",swab,Mexico,Campeche,Reserva de la Biósfera Calakmul,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
viral diversity of bat communities in human-dominated landscapes in mexico,Rico-Ch‡vez et al.,Veterinaria México OA,2015,102,1,0.009804,Phyllostomidae,Carollia,Carollia sowelli,1,alphacoronavirus,NA,Mex Cov 2,single,cross-sectional,PCR,RT-PCR,single,NA,NA,"faecal, rectal, or anal",swab,Mexico,Campeche,Reserva de la Biósfera Calakmul,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
viral diversity of bat communities in human-dominated landscapes in mexico,Rico-Ch‡vez et al.,Veterinaria México OA,2015,102,1,0.009804,Phyllostomidae,Artibeus,Artibeus lituratus,1,betacoronavirus,NA,Mex Cov 11a,single,cross-sectional,PCR,RT-PCR,single,NA,NA,"faecal, rectal, or anal",swab,Mexico,Campeche,Reserva de la Biósfera Calakmul,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
viral diversity of bat communities in human-dominated landscapes in mexico,Rico-Ch‡vez et al.,Veterinaria México OA,2015,10,1,0.1,Vespertilionidae,Myotis,Myotis velifer,1,alphacoronavirus,NA,Mex Cov 7,single,cross-sectional,PCR,RT-PCR,single,NA,NA,"faecal, rectal, or anal",swab,Mexico,Greater Mexico City,"Distrito Federal, Metropolitan Area",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
viral diversity of bat communities in human-dominated landscapes in mexico,Rico-Ch‡vez et al.,Veterinaria México OA,2015,49,2,0.040816,Vespertilionidae,Myotis,Myotis velifer,1,alphacoronavirus,NA,Mex Cov 7,single,cross-sectional,PCR,RT-PCR,single,NA,NA,"faecal, rectal, or anal",swab,Mexico,Greater Mexico City,"Distrito Federal, Metropolitan Area",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
viral diversity of bat communities in human-dominated landscapes in mexico,Rico-Ch‡vez et al.,Veterinaria México OA,2015,49,3,0.061224,Molossidae,Tadarida,Tadarida brasiliensis,1,alphacoronavirus,NA,Mex Cov 8,single,cross-sectional,PCR,RT-PCR,single,NA,NA,"faecal, rectal, or anal",swab,Mexico,Greater Mexico City,"Distrito Federal, Metropolitan Area",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,38,14,0.368421,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,alphacoronavirus,NA,HKU7 related,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,Roman Horse Cave,42.09186111,27.20869444,NA,2008,April,NA,NA,NA,NA,0,0,0,1,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,38,14,0.368421,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,alphacoronavirus,NA,HKU8 related,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,Roman Horse Cave,42.09186111,27.20869444,NA,2008,April,NA,NA,NA,NA,0,0,0,1,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,38,18,0.473684,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,alphacoronavirus,NA,BtCoV1A related,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,Roman Horse Cave,42.09186111,27.20869444,NA,2008,April,NA,NA,NA,NA,0,0,0,1,No
longitudinal study of age-specific pattern of coronavirus infection in lyle's flying fox (pteropus lylei) in thailand,Wacharapluesadee et al.,Virol J,2018,44,11,0.25,Pteropodidae,Pteropus,Pteropus lylei,1,genus not specified,NA,NA,pooled,longitudinal,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Thailand,Chonburi,"S1 (house), Luang temple",13.830018,101.8090549,NA,2012,NA,NA,January,NA,December,1,1,1,1,No
longitudinal study of age-specific pattern of coronavirus infection in lyle's flying fox (pteropus lylei) in thailand,Wacharapluesadee et al.,Virol J,2018,99,35,0.353535,Pteropodidae,Pteropus,Pteropus lylei,1,genus not specified,NA,NA,pooled,longitudinal,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Thailand,Chonburi,"S2 (pig farm), Luang temple",13.830018,101.8090549,NA,2012,NA,NA,January,NA,December,1,1,1,1,No
longitudinal study of age-specific pattern of coronavirus infection in lyle's flying fox (pteropus lylei) in thailand,Wacharapluesadee et al.,Virol J,2018,224,22,0.098214,Pteropodidae,Pteropus,Pteropus lylei,1,genus not specified,NA,NA,pooled,longitudinal,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Thailand,Chonburi,"S3 (roost), Luang temple",13.830018,101.8090549,NA,2012,NA,NA,January,NA,December,1,1,1,1,No
longitudinal study of age-specific pattern of coronavirus infection in lyle's flying fox (pteropus lylei) in thailand,Wacharapluesadee et al.,Virol J,2018,14,4,0.285714,Pteropodidae,Pteropus,Pteropus lylei,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Thailand,Chonburi,"S1, S2, S3 (pooled)",NA,NA,NA,2012,January,NA,NA,NA,NA,0,0,1,0,No
longitudinal study of age-specific pattern of coronavirus infection in lyle's flying fox (pteropus lylei) in thailand,Wacharapluesadee et al.,Virol J,2018,14,0,0,Pteropodidae,Pteropus,Pteropus lylei,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Thailand,Chonburi,"S1, S2, S3 (pooled)",NA,NA,NA,2012,February,NA,NA,NA,NA,0,0,1,0,No
longitudinal study of age-specific pattern of coronavirus infection in lyle's flying fox (pteropus lylei) in thailand,Wacharapluesadee et al.,Virol J,2018,20,0,0,Pteropodidae,Pteropus,Pteropus lylei,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Thailand,Chonburi,"S1, S2, S3 (pooled)",NA,NA,NA,2012,March,NA,NA,NA,NA,0,0,0,1,No
longitudinal study of age-specific pattern of coronavirus infection in lyle's flying fox (pteropus lylei) in thailand,Wacharapluesadee et al.,Virol J,2018,46,2,0.043478,Pteropodidae,Pteropus,Pteropus lylei,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Thailand,Chonburi,"S1, S2, S3 (pooled)",NA,NA,NA,2012,April,NA,NA,NA,NA,0,0,0,1,No
longitudinal study of age-specific pattern of coronavirus infection in lyle's flying fox (pteropus lylei) in thailand,Wacharapluesadee et al.,Virol J,2018,39,16,0.410256,Pteropodidae,Pteropus,Pteropus lylei,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Thailand,Chonburi,"S1, S2, S3 (pooled)",NA,NA,NA,2012,May,NA,NA,NA,NA,0,0,0,1,No
longitudinal study of age-specific pattern of coronavirus infection in lyle's flying fox (pteropus lylei) in thailand,Wacharapluesadee et al.,Virol J,2018,29,14,0.482759,Pteropodidae,Pteropus,Pteropus lylei,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Thailand,Chonburi,"S1, S2, S3 (pooled)",NA,NA,NA,2012,June,NA,NA,NA,NA,1,0,0,0,No
longitudinal study of age-specific pattern of coronavirus infection in lyle's flying fox (pteropus lylei) in thailand,Wacharapluesadee et al.,Virol J,2018,46,14,0.304348,Pteropodidae,Pteropus,Pteropus lylei,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Thailand,Chonburi,"S1, S2, S3 (pooled)",NA,NA,NA,2012,July,NA,NA,NA,NA,1,0,0,0,No
longitudinal study of age-specific pattern of coronavirus infection in lyle's flying fox (pteropus lylei) in thailand,Wacharapluesadee et al.,Virol J,2018,35,9,0.257143,Pteropodidae,Pteropus,Pteropus lylei,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Thailand,Chonburi,"S1, S2, S3 (pooled)",NA,NA,NA,2012,August,NA,NA,NA,NA,1,0,0,0,No
longitudinal study of age-specific pattern of coronavirus infection in lyle's flying fox (pteropus lylei) in thailand,Wacharapluesadee et al.,Virol J,2018,35,6,0.171429,Pteropodidae,Pteropus,Pteropus lylei,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Thailand,Chonburi,"S1, S2, S3 (pooled)",NA,NA,NA,2012,September,NA,NA,NA,NA,0,1,0,0,No
longitudinal study of age-specific pattern of coronavirus infection in lyle's flying fox (pteropus lylei) in thailand,Wacharapluesadee et al.,Virol J,2018,27,3,0.111111,Pteropodidae,Pteropus,Pteropus lylei,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Thailand,Chonburi,"S1, S2, S3 (pooled)",NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
longitudinal study of age-specific pattern of coronavirus infection in lyle's flying fox (pteropus lylei) in thailand,Wacharapluesadee et al.,Virol J,2018,36,0,0,Pteropodidae,Pteropus,Pteropus lylei,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Thailand,Chonburi,"S1, S2, S3 (pooled)",NA,NA,NA,2012,November,NA,NA,NA,NA,0,1,0,0,No
longitudinal study of age-specific pattern of coronavirus infection in lyle's flying fox (pteropus lylei) in thailand,Wacharapluesadee et al.,Virol J,2018,26,0,0,Pteropodidae,Pteropus,Pteropus lylei,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Thailand,Chonburi,"S1, S2, S3 (pooled)",NA,NA,NA,2012,December,NA,NA,NA,NA,0,0,1,0,No
a coronavirus detected in the vampire bat desmodus rotundus,Brand‹o et al.,Braz J Infect Dis,2008,3,1,0.333333,Phyllostomidae,Desmodus,Desmodus rotundus,1,betacoronavirus,NA,BatCoV DR/2007,pooled,cross-sectional,PCR,"RT-PCR,nested RT-PCR",multiple,Other,ORF 1b,intestine,tissue,Brazil,Sao Paulo,NA,NA,NA,NA,2005,NA,NA,NA,NA,NA,1,1,1,1,Yes
"a persistently infecting coronavirus in hibernating myotis lucifugus, the north american little brown bat",Subudhi et al.,J Gen Virol,2017,47,17,0.361702,Vespertilionidae,Myotis,Myotis lucifugus,1,alphacoronavirus,Colacovirus,Myl-CoV CDPHE15,repeat,longitudinal,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Canada,Manitoba,NA,NA,NA,NA,2011,NA,NA,NA,NA,NA,0,0,1,0,Yes
"a persistently infecting coronavirus in hibernating myotis lucifugus, the north american little brown bat",Subudhi et al.,J Gen Virol,2017,127,36,0.283465,Vespertilionidae,Myotis,Myotis lucifugus,1,alphacoronavirus,Colacovirus,Myl-CoV CDPHE15,repeat,longitudinal,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Canada,Manitoba,NA,NA,NA,NA,2012,NA,NA,NA,NA,NA,0,0,1,0,Yes
"a persistently infecting coronavirus in hibernating myotis lucifugus, the north american little brown bat",Subudhi et al.,J Gen Virol,2017,174,5,0.028736,Vespertilionidae,Myotis,Myotis lucifugus,1,alphacoronavirus,Colacovirus,Myl-CoV CDPHE15,pooled,longitudinal,NA,NA,NA,NA,NA,lung or respiratory,tissue,Canada,Manitoba,NA,NA,NA,NA,NA,NA,2011,NA,2012,NA,0,0,1,0,Yes
a real-time pcr assay for bat sars-like coronavirus detection and its application to italian greater horseshoe bat faecal sample surveys,Balboni et al.,Scientificworldjournal,2012,11,10,0.909091,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Modena,San Cesario sul Panaro,NA,NA,NA,2009,August,NA,NA,NA,NA,1,0,0,0,No
a real-time pcr assay for bat sars-like coronavirus detection and its application to italian greater horseshoe bat faecal sample surveys,Balboni et al.,Scientificworldjournal,2012,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Perugia,Sigillo,NA,NA,NA,2009,September,NA,NA,NA,NA,0,1,0,0,No
a real-time pcr assay for bat sars-like coronavirus detection and its application to italian greater horseshoe bat faecal sample surveys,Balboni et al.,Scientificworldjournal,2012,2,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Bologna,"Monte Croara, S. Lazzaro",NA,NA,NA,2009,October,NA,NA,NA,NA,0,1,0,0,No
a real-time pcr assay for bat sars-like coronavirus detection and its application to italian greater horseshoe bat faecal sample surveys,Balboni et al.,Scientificworldjournal,2012,10,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Cuneo,Piobesi d’Alba,NA,NA,NA,2009,October,NA,NA,NA,NA,0,1,0,0,No
a real-time pcr assay for bat sars-like coronavirus detection and its application to italian greater horseshoe bat faecal sample surveys,Balboni et al.,Scientificworldjournal,2012,12,3,0.25,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Cuneo,Rossana,NA,NA,NA,2009,October,NA,NA,NA,NA,0,1,0,0,No
a real-time pcr assay for bat sars-like coronavirus detection and its application to italian greater horseshoe bat faecal sample surveys,Balboni et al.,Scientificworldjournal,2012,3,3,1,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Savona,Giovo,NA,NA,NA,2009,October,NA,NA,NA,NA,0,1,0,0,No
a real-time pcr assay for bat sars-like coronavirus detection and its application to italian greater horseshoe bat faecal sample surveys,Balboni et al.,Scientificworldjournal,2012,3,1,0.333333,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Piacenza,Val di Trebbia,NA,NA,NA,2009,October,NA,NA,NA,NA,0,1,0,0,No
a real-time pcr assay for bat sars-like coronavirus detection and its application to italian greater horseshoe bat faecal sample surveys,Balboni et al.,Scientificworldjournal,2012,3,2,0.666667,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Piacenza,Castell’arquato,NA,NA,NA,2009,November,NA,NA,NA,NA,0,1,0,0,No
alphacoronavirus detected in bats in the united kingdom,August et al.,Vector-borne and Zoonotic Diseases,2012,16,12,0.75,Vespertilionidae,Myotis,Myotis nattereri,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,United Kingdom,Oxfordshire,Wytham Woods,52.29083333,-1.561388889,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,No
alphacoronavirus detected in bats in the united kingdom,August et al.,Vector-borne and Zoonotic Diseases,2012,16,9,0.5625,Vespertilionidae,Myotis,Myotis nattereri,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,United Kingdom,Wiltshire,Savernake Forest,51.67666667,-2.1375,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,No
alphacoronavirus detected in bats in the united kingdom,August et al.,Vector-borne and Zoonotic Diseases,2012,30,5,0.166667,Vespertilionidae,Myotis,Myotis daubentonii,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,United Kingdom,Oxfordshire,Wytham Woods,52.29083333,-1.561388889,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,No
alphacoronavirus detected in bats in the united kingdom,August et al.,Vector-borne and Zoonotic Diseases,2012,26,0,0,Vespertilionidae,Plecotus,Plecotus auritus,1,genus not specified,NA,NA,single,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,United Kingdom,Oxfordshire,Wytham Woods,52.29083333,-1.561388889,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,No
alphacoronavirus detected in bats in the united kingdom,August et al.,Vector-borne and Zoonotic Diseases,2012,15,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,single,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,United Kingdom,SW England,NA,NA,NA,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,No
alphacoronavirus detected in bats in the united kingdom,August et al.,Vector-borne and Zoonotic Diseases,2012,6,0,0,Rhinolophidae,Rhinolophus,Rhinolophus hipposideros,1,genus not specified,NA,NA,single,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,United Kingdom,SW England,NA,NA,NA,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,No
alphacoronavirus detected in bats in the united kingdom,August et al.,Vector-borne and Zoonotic Diseases,2012,2,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,genus not specified,NA,NA,single,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,United Kingdom,Wiltshire,Savernake Forest,51.67666667,-2.1375,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,No
alphacoronavirus detected in bats in the united kingdom,August et al.,Vector-borne and Zoonotic Diseases,2012,1,0,0,Vespertilionidae,Barbastella,Barbastella barbastellus,1,genus not specified,NA,NA,single,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,United Kingdom,Wiltshire,Savernake Forest,51.67666667,-2.1375,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,No
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,14,5,0.357143,Molossidae,Molossus,Molossus rufus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,liver,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,14,3,0.214286,Molossidae,Molossus,Molossus rufus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,lung or respiratory,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,14,1,0.071429,Molossidae,Molossus,Molossus rufus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,intestine,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,1,1,Vespertilionidae,Eptesicus,NA,NA,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,lung or respiratory,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,1,1,Vespertilionidae,Eptesicus,NA,NA,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,intestine,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Vespertilionidae,Eptesicus,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,liver,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,5,2,0.4,Phyllostomidae,Phyllostomus,Phyllostomus discolor,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,liver,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,5,0,0,Phyllostomidae,Phyllostomus,Phyllostomus discolor,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,lung or respiratory,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,5,0,0,Phyllostomidae,Phyllostomus,Phyllostomus discolor,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,intestine,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,13,1,0.076923,Phyllostomidae,Artibeus,Artibeus lituratus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,liver,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,13,0,0,Phyllostomidae,Artibeus,Artibeus lituratus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,lung or respiratory,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,13,0,0,Phyllostomidae,Artibeus,Artibeus lituratus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,intestine,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Phyllostomidae,Glossophaga,Glossophaga soricina,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,liver,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Phyllostomidae,Glossophaga,Glossophaga soricina,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,lung or respiratory,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,1,1,Phyllostomidae,Glossophaga,Glossophaga soricina,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,intestine,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Phyllostomidae,Phyllostomus,Phyllostomus hastatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,liver,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Phyllostomidae,Phyllostomus,Phyllostomus hastatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,lung or respiratory,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Phyllostomidae,Phyllostomus,Phyllostomus hastatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,intestine,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Molossidae,Nyctinomops,Nyctinomops laticaudatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,liver,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Molossidae,Nyctinomops,Nyctinomops laticaudatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,lung or respiratory,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Molossidae,Nyctinomops,Nyctinomops laticaudatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,intestine,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,13,1,0.076923,Molossidae,Molossus,Molossus molossus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,liver,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,13,0,0,Molossidae,Molossus,Molossus molossus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,lung or respiratory,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,13,0,0,Molossidae,Molossus,Molossus molossus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,intestine,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,3,0,0,Vespertilionidae,Eptesicus,Eptesicus furinalis,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,liver,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,3,0,0,Vespertilionidae,Eptesicus,Eptesicus furinalis,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,lung or respiratory,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,3,0,0,Vespertilionidae,Eptesicus,Eptesicus furinalis,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,intestine,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Vespertilionidae,Myotis,Myotis nigricans,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,liver,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Vespertilionidae,Myotis,Myotis nigricans,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,lung or respiratory,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Vespertilionidae,Myotis,Myotis nigricans,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,intestine,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,3,0,0,Phyllostomidae,Artibeus,Artibeus planirostris,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,liver,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,3,0,0,Phyllostomidae,Artibeus,Artibeus planirostris,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,lung or respiratory,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,3,0,0,Phyllostomidae,Artibeus,Artibeus planirostris,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,intestine,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Phyllostomidae,Carollia,Carollia perspicillata,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,liver,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Phyllostomidae,Carollia,Carollia perspicillata,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,lung or respiratory,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Phyllostomidae,Carollia,Carollia perspicillata,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,intestine,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,2,0,0,Phyllostomidae,Vampyressa,Vampyressa pusilla,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,liver,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,2,0,0,Phyllostomidae,Vampyressa,Vampyressa pusilla,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,lung or respiratory,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,2,0,0,Phyllostomidae,Vampyressa,Vampyressa pusilla,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,intestine,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Phyllostomidae,Platyrrhinus,Platyrrhinus lineatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,liver,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Phyllostomidae,Platyrrhinus,Platyrrhinus lineatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,lung or respiratory,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Phyllostomidae,Platyrrhinus,Platyrrhinus lineatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,intestine,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Phyllostomidae,Sturnira,Sturnira lilium,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,liver,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Phyllostomidae,Sturnira,Sturnira lilium,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,lung or respiratory,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Phyllostomidae,Sturnira,Sturnira lilium,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,intestine,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Molossidae,Molossops,Molossops temminckii,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,liver,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Molossidae,Molossops,Molossops temminckii,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,lung or respiratory,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Molossidae,Molossops,Molossops temminckii,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,intestine,tissue,Brazil,São José do Rio Preto,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,11,1,0.090909,Molossidae,Molossus,Molossus molossus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,liver,tissue,Brazil,Barreiras,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,11,1,0.090909,Molossidae,Molossus,Molossus molossus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,lung or respiratory,tissue,Brazil,Barreiras,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,11,1,0.090909,Molossidae,Molossus,Molossus molossus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,intestine,tissue,Brazil,Barreiras,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,4,0,0,Molossidae,Molossus,Molossus rufus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,liver,tissue,Brazil,Barreiras,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,4,0,0,Molossidae,Molossus,Molossus rufus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,lung or respiratory,tissue,Brazil,Barreiras,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,4,0,0,Molossidae,Molossus,Molossus rufus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,intestine,tissue,Brazil,Barreiras,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,2,0,0,Molossidae,Eumops,Eumops glaucinus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,liver,tissue,Brazil,Barreiras,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,2,0,0,Molossidae,Eumops,Eumops glaucinus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,lung or respiratory,tissue,Brazil,Barreiras,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,2,0,0,Molossidae,Eumops,Eumops glaucinus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,intestine,tissue,Brazil,Barreiras,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,9,0,0,Phyllostomidae,Artibeus,Artibeus lituratus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,liver,tissue,Brazil,Barreiras,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,9,0,0,Phyllostomidae,Artibeus,Artibeus lituratus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,lung or respiratory,tissue,Brazil,Barreiras,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,9,0,0,Phyllostomidae,Artibeus,Artibeus lituratus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,intestine,tissue,Brazil,Barreiras,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,9,0,0,Phyllostomidae,Artibeus,Artibeus planirostris,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,liver,tissue,Brazil,Barreiras,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,9,0,0,Phyllostomidae,Artibeus,Artibeus planirostris,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,lung or respiratory,tissue,Brazil,Barreiras,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,9,0,0,Phyllostomidae,Artibeus,Artibeus planirostris,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,intestine,tissue,Brazil,Barreiras,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,2,0,0,Phyllostomidae,Diphylla,Diphylla ecaudata,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,liver,tissue,Brazil,Barreiras,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,2,0,0,Phyllostomidae,Diphylla,Diphylla ecaudata,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,lung or respiratory,tissue,Brazil,Barreiras,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,2,0,0,Phyllostomidae,Diphylla,Diphylla ecaudata,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,intestine,tissue,Brazil,Barreiras,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Emballonuridae,Peropteryx,Peropteryx leucoptera,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,liver,tissue,Brazil,Barreiras,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Emballonuridae,Peropteryx,Peropteryx leucoptera,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,lung or respiratory,tissue,Brazil,Barreiras,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Emballonuridae,Peropteryx,Peropteryx leucoptera,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,intestine,tissue,Brazil,Barreiras,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Phyllostomidae,Desmodus,Desmodus rotundus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,liver,tissue,Brazil,Barreiras,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Phyllostomidae,Desmodus,Desmodus rotundus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,lung or respiratory,tissue,Brazil,Barreiras,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus detection in lungs, liver, and intestines of bats from brazil",Bittar et al.,Microb Ecol,2020,1,0,0,Phyllostomidae,Desmodus,Desmodus rotundus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp: nsP12,intestine,tissue,Brazil,Barreiras,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"alphacoronavirus in urban molossidae and phyllostomidae bats, brazil",Asano et al.,Virol J,2016,11,3,0.272727,Molossidae,Cynomops,Cynomops abrasus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Brazil,Säo Paolo,NA,NA,NA,NA,NA,NA,2013,March,2014,July,0,1,1,0,Yes
"alphacoronavirus in urban molossidae and phyllostomidae bats, brazil",Asano et al.,Virol J,2016,5,3,0.6,Molossidae,Cynomops,Cynomops planirostris,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Brazil,Säo Paolo,NA,NA,NA,NA,NA,NA,2013,March,2014,July,0,1,1,0,Yes
"alphacoronavirus in urban molossidae and phyllostomidae bats, brazil",Asano et al.,Virol J,2016,41,1,0.02439,Phyllostomidae,Desmodus,Desmodus rotundus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Brazil,Säo Paolo,NA,NA,NA,NA,NA,NA,2013,March,2014,July,0,1,1,0,Yes
"alphacoronavirus in urban molossidae and phyllostomidae bats, brazil",Asano et al.,Virol J,2016,33,1,0.030303,Phyllostomidae,Glossophaga,Glossophaga soricina,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Brazil,Säo Paolo,NA,NA,NA,NA,NA,NA,2013,March,2014,July,0,1,1,0,Yes
"alphacoronavirus in urban molossidae and phyllostomidae bats, brazil",Asano et al.,Virol J,2016,12,1,0.083333,Phyllostomidae,Platyrrhinus,Platyrrhinus lineatus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Brazil,Säo Paolo,NA,NA,NA,NA,NA,NA,2013,March,2014,July,0,1,1,0,Yes
alphacoronaviruses detected in french bats are phylogeographically linked to coronaviruses of european bats,Goffard et al.,Viruses,2015,53,3,0.056604,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,Bourges,Colony 1,47.01083333,2.581666667,NA,2014,July,NA,NA,NA,NA,1,0,0,0,No
alphacoronaviruses detected in french bats are phylogeographically linked to coronaviruses of european bats,Goffard et al.,Viruses,2015,20,2,0.1,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,Bourges,Colony 2,47.08305556,2.517222222,NA,2014,July,NA,NA,NA,NA,1,0,0,0,No
alphacoronaviruses detected in french bats are phylogeographically linked to coronaviruses of european bats,Goffard et al.,Viruses,2015,10,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,Bourges,Colony 3,46.93972222,2.538611111,NA,2014,July,NA,NA,NA,NA,1,0,0,0,No
alphacoronaviruses detected in french bats are phylogeographically linked to coronaviruses of european bats,Goffard et al.,Viruses,2015,35,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,Bourges,Colony 4,47.04416667,2.560555556,NA,2014,July,NA,NA,NA,NA,1,0,0,0,No
alphacoronaviruses detected in french bats are phylogeographically linked to coronaviruses of european bats,Goffard et al.,Viruses,2015,10,0,0,Vespertilionidae,Myotis,Myotis myotis,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,Bourges,Colony 5,47.07333333,2.522777778,NA,2014,July,NA,NA,NA,NA,1,0,0,0,No
alphacoronaviruses detected in french bats are phylogeographically linked to coronaviruses of european bats,Goffard et al.,Viruses,2015,10,0,0,Vespertilionidae,Eptesicus,Eptesicus serotinus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,Bourges,Colony 6,46.8575,2.316388889,NA,2014,July,NA,NA,NA,NA,1,0,0,0,No
alphacoronaviruses detected in french bats are phylogeographically linked to coronaviruses of european bats,Goffard et al.,Viruses,2015,24,0,0,Vespertilionidae,Barbastella,Barbastella barbastellus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,Bourges,Colony 7,46.82444444,2.389166667,NA,2014,August,NA,NA,NA,NA,1,0,0,0,No
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,11,0,0,Vespertilionidae,Myotis,Myotis lucifugus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 1,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,3,0,0,Vespertilionidae,Myotis,Myotis volans,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 2,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,29,0,0,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 3,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,1,0,0,Vespertilionidae,Lasionycteris,Lasionycteris noctivagans,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 3,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,5,1,0.2,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 4,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,20,0,0,Vespertilionidae,Lasiurus,Lasiurus cinereus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 4,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,1,0,0,Vespertilionidae,Lasionycteris,Lasionycteris noctivagans,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 4,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,1,0,0,Vespertilionidae,Myotis,Myotis ciliolabrum,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 4,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,7,1,0.142857,Vespertilionidae,Myotis,Myotis evotis,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 4,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,16,5,0.3125,Vespertilionidae,Myotis,Myotis volans,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 4,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,34,2,0.058824,Vespertilionidae,Myotis,Myotis volans,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 4,NA,NA,NA,2008,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,26,5,0.192308,Vespertilionidae,Myotis,Myotis volans,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 4,NA,NA,NA,2009,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,11,0,0,Vespertilionidae,Antrozous,Antrozous pallidus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 5,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,1,0,0,Vespertilionidae,Corynorhinus,Corynorhinus townsendii,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 5,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,4,4,1,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 5,NA,NA,NA,2008,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,14,4,0.285714,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 5,NA,NA,NA,2009,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,1,0,0,Vespertilionidae,Lasiurus,Lasiurus cinereus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 5,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,3,0,0,Vespertilionidae,Lasionycteris,Lasionycteris noctivagans,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 5,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,3,0,0,Vespertilionidae,Myotis,Myotis thysanodes,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 5,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,13,0,0,Vespertilionidae,Myotis,Myotis yumanensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 5,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,6,0,0,Vespertilionidae,Parastrellus,Parastrellus hesperus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 5,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,9,0,0,Vespertilionidae,Myotis,Myotis occultus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 6,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,1,0,0,Vespertilionidae,Myotis,Myotis yumanensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 7,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,2,0,0,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 8,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,1,0,0,Vespertilionidae,Lasiurus,Lasiurus cinereus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 8,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,1,0,0,Vespertilionidae,Myotis,Myotis californicus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 8,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,1,0,0,Vespertilionidae,Myotis,Myotis ciliolabrum,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 8,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,1,0,0,Vespertilionidae,Myotis,Myotis evotis,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 8,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,1,0,0,Vespertilionidae,Myotis,Myotis thysanodes,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 8,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,4,0,0,Vespertilionidae,Myotis,Myotis volans,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 8,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,18,0,0,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 9,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,1,0,0,Vespertilionidae,Euderma,Euderma maculatum,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 9,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,7,0,0,Vespertilionidae,Lasiurus,Lasiurus cinereus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 9,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,7,0,0,Vespertilionidae,Lasionycteris,Lasionycteris noctivagans,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 9,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,7,0,0,Vespertilionidae,Myotis,Myotis californicus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 9,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,19,0,0,Vespertilionidae,Myotis,Myotis ciliolabrum,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 9,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,22,0,0,Vespertilionidae,Myotis,Myotis evotis,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 9,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,4,0,0,Vespertilionidae,Myotis,Myotis thysanodes,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 9,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,22,0,0,Vespertilionidae,Myotis,Myotis volans,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 9,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,3,0,0,Vespertilionidae,Myotis,Myotis yumanensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 9,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,8,0,0,Vespertilionidae,Parastrellus,Parastrellus hesperus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 9,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,13,0,0,Molossidae,Tadarida,Tadarida brasiliensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 9,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,8,0,0,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 10,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,13,0,0,Vespertilionidae,Lasionycteris,Lasionycteris noctivagans,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 10,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,6,0,0,Vespertilionidae,Myotis,Myotis evotis,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 10,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,7,0,0,Vespertilionidae,Myotis,Myotis occultus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 10,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,23,0,0,Vespertilionidae,Myotis,Myotis volans,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 10,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,1,0,0,Vespertilionidae,Myotis,Myotis yumanensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 10,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,3,0,0,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 11,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,7,0,0,Vespertilionidae,Lasiurus,Lasiurus cinereus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 11,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,3,0,0,Vespertilionidae,Lasionycteris,Lasionycteris noctivagans,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 11,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,11,0,0,Vespertilionidae,Myotis,Myotis volans,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 11,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,2,0,0,Vespertilionidae,Antrozous,Antrozous pallidus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 12,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,3,0,0,Vespertilionidae,Corynorhinus,Corynorhinus townsendii,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 12,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,2,0,0,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 13,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,2,0,0,Vespertilionidae,Euderma,Euderma maculatum,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 13,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,3,0,0,Vespertilionidae,Lasionycteris,Lasionycteris noctivagans,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 13,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,6,0,0,Vespertilionidae,Myotis,Myotis evotis,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 13,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,6,0,0,Vespertilionidae,Myotis,Myotis occultus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 13,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,4,0,0,Vespertilionidae,Myotis,Myotis volans,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 13,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,5,0,0,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 14,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,3,0,0,Vespertilionidae,Lasiurus,Lasiurus cinereus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 14,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,11,0,0,Vespertilionidae,Lasionycteris,Lasionycteris noctivagans,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 14,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,3,0,0,Vespertilionidae,Myotis,Myotis evotis,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 14,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,13,0,0,Vespertilionidae,Myotis,Myotis thysanodes,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 14,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,7,0,0,Vespertilionidae,Myotis,Myotis evotis,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 15,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,1,0,0,Vespertilionidae,Myotis,Myotis thysanodes,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 15,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,3,0,0,Vespertilionidae,Myotis,Myotis volans,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 16,NA,NA,NA,2007,NA,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,31,0,0,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 17,NA,NA,NA,2007,June,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,12,1,0.083333,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 17,NA,NA,NA,2007,August,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,23,2,0.086957,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 17,NA,NA,NA,2008,June,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,13,4,0.307692,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 17,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,44,9,0.204545,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 17,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,26,3,0.115385,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 18,NA,NA,NA,2008,June,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,3,2,0.666667,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 18,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,40,3,0.075,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 19,NA,NA,NA,2007,June,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,27,4,0.148148,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 19,NA,NA,NA,2007,August,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,25,2,0.08,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 19,NA,NA,NA,2008,June,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,31,2,0.064516,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 19,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,12,1,0.083333,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 20,NA,NA,NA,2007,June,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,13,2,0.153846,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 20,NA,NA,NA,2008,June,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,16,1,0.0625,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 20,NA,NA,NA,2008,June,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,29,0,0,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 21,NA,NA,NA,2007,June,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,22,0,0,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,genus not specified,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 21,NA,NA,NA,2007,August,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,39,2,0.051282,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 21,NA,NA,NA,2008,June,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,24,4,0.166667,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 21,NA,NA,NA,2008,June,NA,NA,NA,NA,1,0,0,0,Yes
"alphacoronaviruses in new world bats: prevalence, persistence, phylogeny, and potential for interaction with humans",Osborne et al.,Plos One,2011,35,4,0.114286,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,United States of America,Colorado,Site 21,NA,NA,NA,2008,August,NA,NA,NA,NA,1,0,0,0,Yes
amplification of emerging viruses in a bat colony,Drexler et al.,Emerg Infect Dis,2011,40,31,0.775,Vespertilionidae,Myotis,Myotis myotis,1,alphacoronavirus,NA,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Germany,Rhineland-Palatinate,Attic,50.42969722,6.931158333,NA,2008,May,NA,NA,NA,NA,0,0,0,1,No
amplification of emerging viruses in a bat colony,Drexler et al.,Emerg Infect Dis,2011,44,10,0.227273,Vespertilionidae,Myotis,Myotis myotis,1,alphacoronavirus,NA,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Germany,Rhineland-Palatinate,Attic,50.42969722,6.931158333,NA,2008,May,NA,NA,NA,NA,0,0,0,1,No
amplification of emerging viruses in a bat colony,Drexler et al.,Emerg Infect Dis,2011,40,4,0.1,Vespertilionidae,Myotis,Myotis myotis,1,alphacoronavirus,NA,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Germany,Rhineland-Palatinate,Attic,50.42969722,6.931158333,NA,2008,June,NA,NA,NA,NA,1,0,0,0,No
amplification of emerging viruses in a bat colony,Drexler et al.,Emerg Infect Dis,2011,40,40,1,Vespertilionidae,Myotis,Myotis myotis,1,alphacoronavirus,NA,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Germany,Rhineland-Palatinate,Attic,50.42969722,6.931158333,NA,2008,July,NA,NA,NA,NA,1,0,0,0,No
amplification of emerging viruses in a bat colony,Drexler et al.,Emerg Infect Dis,2011,31,31,1,Vespertilionidae,Myotis,Myotis myotis,1,alphacoronavirus,NA,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Germany,Rhineland-Palatinate,Attic,50.42969722,6.931158333,NA,2008,July,NA,NA,NA,NA,1,0,0,0,No
amplification of emerging viruses in a bat colony,Drexler et al.,Emerg Infect Dis,2011,40,9,0.225,Vespertilionidae,Myotis,Myotis myotis,1,alphacoronavirus,NA,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Germany,Rhineland-Palatinate,Attic,50.42969722,6.931158333,NA,2009,May,NA,NA,NA,NA,0,0,0,1,No
amplification of emerging viruses in a bat colony,Drexler et al.,Emerg Infect Dis,2011,48,35,0.729167,Vespertilionidae,Myotis,Myotis myotis,1,alphacoronavirus,NA,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Germany,Rhineland-Palatinate,Attic,50.42969722,6.931158333,NA,2009,June,NA,NA,NA,NA,1,0,0,0,No
amplification of emerging viruses in a bat colony,Drexler et al.,Emerg Infect Dis,2011,40,40,1,Vespertilionidae,Myotis,Myotis myotis,1,alphacoronavirus,NA,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Germany,Rhineland-Palatinate,Attic,50.42969722,6.931158333,NA,2010,May,NA,NA,NA,NA,0,0,0,1,No
amplification of emerging viruses in a bat colony,Drexler et al.,Emerg Infect Dis,2011,18,9,0.5,Vespertilionidae,Myotis,Myotis myotis,1,alphacoronavirus,NA,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Germany,Rhineland-Palatinate,Attic,50.42969722,6.931158333,NA,2010,May,NA,NA,NA,NA,0,0,0,1,No
amplification of emerging viruses in a bat colony,Drexler et al.,Emerg Infect Dis,2011,49,10,0.204082,Vespertilionidae,Myotis,Myotis myotis,1,alphacoronavirus,NA,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Germany,Rhineland-Palatinate,Attic,50.42969722,6.931158333,NA,2010,June,NA,NA,NA,NA,1,0,0,0,No
amplification of emerging viruses in a bat colony,Drexler et al.,Emerg Infect Dis,2011,40,39,0.975,Vespertilionidae,Myotis,Myotis myotis,1,alphacoronavirus,NA,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Germany,Rhineland-Palatinate,Attic,50.42969722,6.931158333,NA,2010,July,NA,NA,NA,NA,1,0,0,0,No
amplification of emerging viruses in a bat colony,Drexler et al.,Emerg Infect Dis,2011,40,39,0.975,Vespertilionidae,Myotis,Myotis myotis,1,alphacoronavirus,NA,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Germany,Rhineland-Palatinate,Attic,50.42969722,6.931158333,NA,2010,July,NA,NA,NA,NA,1,0,0,0,No
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,19,0,0,Hipposideridae,Hipposideros,Hipposideros commersoni,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Madagascar,NA,NA,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,19,0,0,Miniopteridae,Miniopterus,Miniopterus manavi,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Madagascar,NA,NA,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,14,0,0,Miniopteridae,Miniopterus,Miniopterus gleni,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Madagascar,NA,NA,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,2,0,0,Miniopteridae,Miniopterus,Miniopterus gleni,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Madagascar,NA,NA,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,28,0,0,Miniopteridae,Miniopterus,Miniopterus griveaudi,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Madagascar,NA,NA,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,8,0,0,Miniopteridae,Miniopterus,Miniopterus mahafaliensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Madagascar,NA,NA,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,8,0,0,Miniopteridae,Miniopterus,Miniopterus sororculus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Madagascar,NA,NA,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,29,0,0,Molossidae,Chaerephon,Chaerephon atsinanana,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Madagascar,NA,NA,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,45,0,0,Molossidae,Chaerephon,Chaerephon pumilus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Madagascar,NA,NA,NA,NA,NA,2018,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,94,0,0,Molossidae,Mops,Mops leucostigma,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Madagascar,NA,NA,NA,NA,NA,2018,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,19,4,0.210526,Molossidae,Mops,Mops midas,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Madagascar,NA,NA,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,2,0,0,Molossidae,Mops,Mops midas,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Madagascar,NA,NA,NA,NA,NA,2018,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,22,10,0.454545,Molossidae,Mormopterus,Mormopterus jugularis,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Madagascar,NA,NA,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,41,0,0,Molossidae,Mormopterus,Mormopterus jugularis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Madagascar,NA,NA,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,12,0,0,Molossidae,Otomops,Otomops madagascariensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Madagascar,NA,NA,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,6,0,0,Molossidae,Otomops,Otomops madagascariensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Madagascar,NA,NA,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,45,6,0.133333,Pteropodidae,Rousettus,Rousettus madagascariensis,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Madagascar,NA,NA,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,32,0,0,Hipposideridae,Paratriaenops,Paratriaenops furculus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Madagascar,NA,NA,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,21,2,0.095238,Hipposideridae,Triaenops,Triaenops menamena,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Madagascar,NA,NA,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,13,2,0.153846,Hipposideridae,Triaenops,Triaenops menamena,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Madagascar,NA,NA,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,17,0,0,Vespertilionidae,Myotis,Myotis goudoti,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Madagascar,NA,NA,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,2,0,0,Vespertilionidae,Neoromicia,Neoromicia malagasyensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Madagascar,NA,NA,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,4,0,0,Vespertilionidae,Neoromicia,Neoromicia matroka,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Madagascar,NA,NA,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,5,0,0,Vespertilionidae,Pipistrellus,Pipistrellus hesperidus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Madagascar,NA,NA,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,6,0,0,Molossidae,Mormopterus,Mormopterus acetabulosus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Mauritius,NA,NA,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,48,0,0,Pteropodidae,Pteropus,Pteropus niger,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,Mauritius,NA,NA,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,2,0,0,Emballonuridae,Taphozous,Taphozous mauritianus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Mauritius,NA,NA,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,4,1,0.25,Molossidae,Chaerephon,NA,NA,alphacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,Mayotte,NA,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,60,7,0.116667,Molossidae,Chaerephon,Chaerephon pumilus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,Mayotte,NA,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,22,0,0,Pteropodidae,Pteropus,Pteropus seychellensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,France,Mayotte,NA,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,59,10,0.169492,Hipposideridae,Hipposideros,Hipposideros caffer,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Mozambique,NA,NA,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,21,4,0.190476,Miniopteridae,Miniopterus,Miniopterus mossambicus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Mozambique,NA,NA,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,54,11,0.203704,Molossidae,Mops,Mops condylurus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Mozambique,NA,NA,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,14,4,0.285714,Nycteridae,Nycteris,Nycteris thebaica,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Mozambique,NA,NA,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,9,6,0.666667,Rhinolophidae,Rhinolophus,Rhinolophus landeri,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Mozambique,NA,NA,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,20,0,0,Rhinolophidae,Rhinolophus,Rhinolophus mossambicus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Mozambique,NA,NA,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,30,9,0.3,Rhinolophidae,Rhinolophus,Rhinolophus simulator,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Mozambique,NA,NA,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,2,1,0.5,Rhinolophidae,Rhinolophus,NA,NA,alphacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Mozambique,NA,NA,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,51,9,0.176471,Hipposideridae,Triaenops,Triaenops afer,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Mozambique,NA,NA,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,2,0,0,Vespertilionidae,Neoromicia,Neoromicia nana,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Mozambique,NA,NA,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,2,0,0,Vespertilionidae,Scotophilus,Scotophilus viridis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Mozambique,NA,NA,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,50,2,0.04,Molossidae,Mormopterus,Mormopterus francoismoutoui,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,France,Réunion,NA,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
bat coronavirus phylogeography in the western indian ocean,Joffrin et al.,Sci Rep,2020,50,0,0,Pteropodidae,Pteropus,Pteropus seychellensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,Seychelles,NA,NA,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
"bat coronaviruses and experimental infection of bats, the philippines",Watanabe et al.,Emerg Infect Dis,2010,4,0,0,Pteropodidae,Cynopterus,Cynopterus brachyotis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,Los Baños,NA,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"bat coronaviruses and experimental infection of bats, the philippines",Watanabe et al.,Emerg Infect Dis,2010,3,0,0,Pteropodidae,Eonycteris,Eonycteris spelaea,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,Los Baños,NA,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"bat coronaviruses and experimental infection of bats, the philippines",Watanabe et al.,Emerg Infect Dis,2010,14,0,0,Pteropodidae,Ptenochirus,Ptenochirus jagori,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,Los Baños,NA,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"bat coronaviruses and experimental infection of bats, the philippines",Watanabe et al.,Emerg Infect Dis,2010,1,0,0,Pteropodidae,Cynopterus,Cynopterus brachyotis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,Diliman,Site A,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"bat coronaviruses and experimental infection of bats, the philippines",Watanabe et al.,Emerg Infect Dis,2010,1,0,0,Pteropodidae,Eonycteris,Eonycteris spelaea,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,Diliman,Site A,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"bat coronaviruses and experimental infection of bats, the philippines",Watanabe et al.,Emerg Infect Dis,2010,1,0,0,Pteropodidae,Ptenochirus,Ptenochirus jagori,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,Diliman,Site A,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"bat coronaviruses and experimental infection of bats, the philippines",Watanabe et al.,Emerg Infect Dis,2010,1,0,0,Pteropodidae,Eonycteris,Eonycteris spelaea,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,Diliman,Site B,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"bat coronaviruses and experimental infection of bats, the philippines",Watanabe et al.,Emerg Infect Dis,2010,3,0,0,Vespertilionidae,Pipistrellus,Pipistrellus javanicus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,Diliman,Site B,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"bat coronaviruses and experimental infection of bats, the philippines",Watanabe et al.,Emerg Infect Dis,2010,4,4,1,Vespertilionidae,Scotophilus,Scotophilus kuhlii,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,Diliman,Site B,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"bat coronaviruses and experimental infection of bats, the philippines",Watanabe et al.,Emerg Infect Dis,2010,18,0,0,Pteropodidae,Cynopterus,Cynopterus brachyotis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,Diliman,Site C,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"bat coronaviruses and experimental infection of bats, the philippines",Watanabe et al.,Emerg Infect Dis,2010,1,0,0,Pteropodidae,Ptenochirus,Ptenochirus jagori,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,Diliman,Site C,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"bat coronaviruses and experimental infection of bats, the philippines",Watanabe et al.,Emerg Infect Dis,2010,1,0,0,Pteropodidae,Rousettus,Rousettus amplexicaudatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,Diliman,Site C,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"bat coronaviruses and experimental infection of bats, the philippines",Watanabe et al.,Emerg Infect Dis,2010,4,2,0.5,Pteropodidae,Cynopterus,Cynopterus brachyotis,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,Los Baños,NA,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"bat coronaviruses and experimental infection of bats, the philippines",Watanabe et al.,Emerg Infect Dis,2010,3,2,0.666667,Pteropodidae,Eonycteris,Eonycteris spelaea,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,Los Baños,NA,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"bat coronaviruses and experimental infection of bats, the philippines",Watanabe et al.,Emerg Infect Dis,2010,14,11,0.785714,Pteropodidae,Ptenochirus,Ptenochirus jagori,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,Los Baños,NA,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"bat coronaviruses and experimental infection of bats, the philippines",Watanabe et al.,Emerg Infect Dis,2010,1,1,1,Pteropodidae,Cynopterus,Cynopterus brachyotis,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,Diliman,Site A,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"bat coronaviruses and experimental infection of bats, the philippines",Watanabe et al.,Emerg Infect Dis,2010,1,1,1,Pteropodidae,Eonycteris,Eonycteris spelaea,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,Diliman,Site A,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"bat coronaviruses and experimental infection of bats, the philippines",Watanabe et al.,Emerg Infect Dis,2010,1,0,0,Pteropodidae,Ptenochirus,Ptenochirus jagori,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,Diliman,Site A,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"bat coronaviruses and experimental infection of bats, the philippines",Watanabe et al.,Emerg Infect Dis,2010,1,1,1,Pteropodidae,Eonycteris,Eonycteris spelaea,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,Diliman,Site B,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"bat coronaviruses and experimental infection of bats, the philippines",Watanabe et al.,Emerg Infect Dis,2010,3,0,0,Vespertilionidae,Pipistrellus,Pipistrellus javanicus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,Diliman,Site B,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"bat coronaviruses and experimental infection of bats, the philippines",Watanabe et al.,Emerg Infect Dis,2010,4,0,0,Vespertilionidae,Scotophilus,Scotophilus kuhlii,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,Diliman,Site B,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"bat coronaviruses and experimental infection of bats, the philippines",Watanabe et al.,Emerg Infect Dis,2010,18,6,0.333333,Pteropodidae,Cynopterus,Cynopterus brachyotis,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,Diliman,Site C,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"bat coronaviruses and experimental infection of bats, the philippines",Watanabe et al.,Emerg Infect Dis,2010,1,0,0,Pteropodidae,Ptenochirus,Ptenochirus jagori,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,Diliman,Site C,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
"bat coronaviruses and experimental infection of bats, the philippines",Watanabe et al.,Emerg Infect Dis,2010,1,1,1,Pteropodidae,Rousettus,Rousettus amplexicaudatus,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,Diliman,Site C,NA,NA,NA,2008,July,NA,NA,NA,NA,1,0,0,0,Yes
bats are natural reservoirs of sars-like coronaviruses,Li et al.,Science,2005,110,0,0,Pteropodidae,Rousettus,Rousettus leschenaultii,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,PCR,single,Other,ORF SARS-Cov Tor2,"faecal, rectal, or anal",swab,China,Guangxi,Nanning,NA,NA,NA,2004,March,NA,NA,NA,NA,0,0,0,1,No
bats are natural reservoirs of sars-like coronaviruses,Li et al.,Science,2005,45,0,0,Pteropodidae,Rousettus,Rousettus leschenaultii,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,PCR,single,Other,ORF SARS-Cov Tor2,"faecal, rectal, or anal",swab,China,Guangdong,Maoming,NA,NA,NA,2004,March,NA,NA,NA,NA,0,0,0,1,No
bats are natural reservoirs of sars-like coronaviruses,Li et al.,Science,2005,27,0,0,Pteropodidae,Cynopterus,Cynopterus sphinx,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,PCR,single,Other,ORF SARS-Cov Tor2,"faecal, rectal, or anal",swab,China,Guangdong,Maoming,NA,NA,NA,2004,March,NA,NA,NA,NA,0,0,0,1,No
bats are natural reservoirs of sars-like coronaviruses,Li et al.,Science,2005,55,0,0,Pteropodidae,Rousettus,Rousettus leschenaultii,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,PCR,single,Other,ORF SARS-Cov Tor2,"faecal, rectal, or anal",swab,China,Guangxi,Nanning,NA,NA,NA,2004,July,NA,NA,NA,NA,1,0,0,0,No
bats are natural reservoirs of sars-like coronaviruses,Li et al.,Science,2005,21,0,0,Vespertilionidae,Myotis,Myotis pilosus,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,PCR,single,Other,ORF SARS-Cov Tor2,"faecal, rectal, or anal",swab,China,Tianjin,NA,NA,NA,NA,2004,July,NA,NA,NA,NA,1,0,0,0,No
bats are natural reservoirs of sars-like coronaviruses,Li et al.,Science,2005,15,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,PCR,single,Other,ORF SARS-Cov Tor2,"faecal, rectal, or anal",swab,China,Hubei,Yichang,NA,NA,NA,2004,November,NA,NA,NA,NA,0,1,0,0,No
bats are natural reservoirs of sars-like coronaviruses,Li et al.,Science,2005,8,1,0.125,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,PCR,single,Other,ORF SARS-Cov Tor2,"faecal, rectal, or anal",swab,China,Hubei,Yichang,NA,NA,NA,2004,November,NA,NA,NA,NA,0,1,0,0,No
bats are natural reservoirs of sars-like coronaviruses,Li et al.,Science,2005,8,1,0.125,Rhinolophidae,Rhinolophus,Rhinolophus macrotis,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,PCR,single,Other,ORF SARS-Cov Tor2,"faecal, rectal, or anal",swab,China,Hubei,Yichang,NA,NA,NA,2004,November,NA,NA,NA,NA,0,1,0,0,No
bats are natural reservoirs of sars-like coronaviruses,Li et al.,Science,2005,1,0,0,Vespertilionidae,Nyctalus,Nyctalus plancyi,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,PCR,single,Other,ORF SARS-Cov Tor2,"faecal, rectal, or anal",swab,China,Hubei,Yichang,NA,NA,NA,2004,November,NA,NA,NA,NA,0,1,0,0,No
bats are natural reservoirs of sars-like coronaviruses,Li et al.,Science,2005,1,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,PCR,single,Other,ORF SARS-Cov Tor2,"faecal, rectal, or anal",swab,China,Hubei,Yichang,NA,NA,NA,2004,November,NA,NA,NA,NA,0,1,0,0,No
bats are natural reservoirs of sars-like coronaviruses,Li et al.,Science,2005,1,0,0,Vespertilionidae,Myotis,Myotis altarium,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,PCR,single,Other,ORF SARS-Cov Tor2,"faecal, rectal, or anal",swab,China,Hubei,Yichang,NA,NA,NA,2004,November,NA,NA,NA,NA,0,1,0,0,No
bats are natural reservoirs of sars-like coronaviruses,Li et al.,Science,2005,30,3,0.1,Rhinolophidae,Rhinolophus,Rhinolophus pearsonii,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,PCR,single,Other,ORF SARS-Cov Tor2,"faecal, rectal, or anal",swab,China,Guangxi,Nanning,NA,NA,NA,2004,December,NA,NA,NA,NA,0,0,1,0,No
bats are natural reservoirs of sars-like coronaviruses,Li et al.,Science,2005,6,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,PCR,single,Other,ORF SARS-Cov Tor2,"faecal, rectal, or anal",swab,China,Guangxi,Nanning,NA,NA,NA,2004,December,NA,NA,NA,NA,0,0,1,0,No
bats are natural reservoirs of sars-like coronaviruses,Li et al.,Science,2005,55,0,0,Pteropodidae,Rousettus,Rousettus leschenaultii,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,PCR,single,Other,ORF SARS-Cov Tor2,lung or respiratory,swab,China,Guangxi,Nanning,NA,NA,NA,2004,July,NA,NA,NA,NA,1,0,0,0,No
bats are natural reservoirs of sars-like coronaviruses,Li et al.,Science,2005,21,0,0,Vespertilionidae,Myotis,Myotis pilosus,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,PCR,single,Other,ORF SARS-Cov Tor2,lung or respiratory,swab,China,Tianjin,NA,NA,NA,NA,2004,July,NA,NA,NA,NA,1,0,0,0,No
bats are natural reservoirs of sars-like coronaviruses,Li et al.,Science,2005,3,0,0,Rhinolophidae,Rhinolophus,Rhinolophus macrotis,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,PCR,single,Other,ORF SARS-Cov Tor2,lung or respiratory,swab,China,Hubei,Yichang,NA,NA,NA,2004,November,NA,NA,NA,NA,0,1,0,0,No
bats are natural reservoirs of sars-like coronaviruses,Li et al.,Science,2005,11,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pearsonii,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,PCR,single,Other,ORF SARS-Cov Tor2,lung or respiratory,swab,China,Guangxi,Nanning,NA,NA,NA,2004,December,NA,NA,NA,NA,0,0,1,0,No
bats are natural reservoirs of sars-like coronaviruses,Li et al.,Science,2005,2,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,PCR,single,Other,ORF SARS-Cov Tor2,lung or respiratory,swab,China,Guangxi,Nanning,NA,NA,NA,2004,December,NA,NA,NA,NA,0,0,1,0,No
characterization of a new member of alphacoronavirus with unique genomic features in rhinolophus bats,Wang et al.,Viruses,2019,499,52,0.104208,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,alphacoronavirus,NA,HKU2,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,"Guangdong, Guizhou, Hainan, Henan, Jiangsu, Yunnan, Zhejiang",NA,NA,NA,NA,NA,NA,2004,November,2014,November,0,1,0,0,No
characterization of a new member of alphacoronavirus with unique genomic features in rhinolophus bats,Wang et al.,Viruses,2019,17,0,0,Rhinolophidae,Rhinolophus,Rhinolophus lepidus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,"Guangdong, Hubei, Yunnan",NA,NA,NA,NA,NA,NA,2004,November,2014,November,0,1,0,0,No
characterization of a new member of alphacoronavirus with unique genomic features in rhinolophus bats,Wang et al.,Viruses,2019,21,0,0,Rhinolophidae,Rhinolophus,Rhinolophus lepidus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,Fujian,NA,NA,NA,NA,NA,NA,2004,November,2014,November,0,1,0,0,No
characterization of a new member of alphacoronavirus with unique genomic features in rhinolophus bats,Wang et al.,Viruses,2019,8,0,0,Rhinolophidae,Rhinolophus,Rhinolophus luctus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,"Guangdong, Hainan, Zhejiang",NA,NA,NA,NA,NA,NA,2004,November,2014,November,0,1,0,0,No
characterization of a new member of alphacoronavirus with unique genomic features in rhinolophus bats,Wang et al.,Viruses,2019,31,1,0.032258,Rhinolophidae,Rhinolophus,Rhinolophus macrotis,1,alphacoronavirus,NA,HKU2,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,"Chongqing, Guangdong, Guangxi, Hebei, Hubei, Jiangsu, Beijing, Yunnan",NA,NA,NA,NA,NA,NA,2004,November,2014,November,0,1,0,0,No
characterization of a new member of alphacoronavirus with unique genomic features in rhinolophus bats,Wang et al.,Viruses,2019,5,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,Yunnan,NA,NA,NA,NA,NA,NA,2004,November,2014,November,0,1,0,0,No
characterization of a new member of alphacoronavirus with unique genomic features in rhinolophus bats,Wang et al.,Viruses,2019,106,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pearsonii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,"Fujian, Guangdong, Guangxi, Guizhou, Henan, Tibet, Yunnan",NA,NA,NA,NA,NA,NA,2004,November,2014,November,0,1,0,0,No
characterization of a new member of alphacoronavirus with unique genomic features in rhinolophus bats,Wang et al.,Viruses,2019,283,4,0.014134,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,alphacoronavirus,NA,HKU2,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,"Fujian, Guangdong, Guangxi, Hebei, Henan, Hubei, Jiangsu, Shandong",NA,NA,NA,NA,NA,NA,2004,November,2014,November,0,1,0,0,No
characterization of a new member of alphacoronavirus with unique genomic features in rhinolophus bats,Wang et al.,Viruses,2019,55,25,0.454545,Rhinolophidae,Rhinolophus,Rhinolophus shameli,1,alphacoronavirus,NA,HKU2,pooled,longitudinal,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,Yunnan,NA,NA,NA,NA,NA,NA,2004,November,2014,November,0,1,0,0,No
characterization of a new member of alphacoronavirus with unique genomic features in rhinolophus bats,Wang et al.,Viruses,2019,740,23,0.031081,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,alphacoronavirus,NA,"Rhinolophus bat HKU2 (12), Miniopterus Bat 1 (3), btcov/rh/yn2012 (6),  RsBtCoV/13187 (2)",pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,"Fujian, Guangdong, Guangxi, Guizhou, Hainan, Hubei, Hunan, Jiangsu, Sichuan, Yunnan, Zhejiang",NA,NA,NA,NA,NA,NA,2004,November,2014,November,0,1,0,0,No
characterization of a new member of alphacoronavirus with unique genomic features in rhinolophus bats,Wang et al.,Viruses,2019,58,0,0,Rhinolophidae,Rhinolophus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,"Chongqing, Guangxi, Guizhou, Yunnan",NA,NA,NA,NA,NA,NA,2004,November,2014,November,0,1,0,0,No
characterization of a new member of alphacoronavirus with unique genomic features in rhinolophus bats,Wang et al.,Viruses,2019,499,2,0.004008,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,alphacoronavirus,NA,HKU8,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,"Guangdong, Guizhou, Hainan, Henan, Jiangsu, Yunnan, Zhejiang",NA,NA,NA,NA,NA,NA,2004,November,2014,November,0,1,0,0,No
characterization of a new member of alphacoronavirus with unique genomic features in rhinolophus bats,Wang et al.,Viruses,2019,55,10,0.181818,Rhinolophidae,Rhinolophus,Rhinolophus shameli,1,alphacoronavirus,NA,HKU8,pooled,longitudinal,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,Yunnan,NA,NA,NA,NA,NA,NA,2004,November,2014,November,0,1,0,0,No
characterization of a new member of alphacoronavirus with unique genomic features in rhinolophus bats,Wang et al.,Viruses,2019,238,1,0.004202,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,alphacoronavirus,NA,HuB2013,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,"Beijing, Fujian, Gansu, Guizhou, Hebei, Henan, Shandong, Shanxi, Yunnan",NA,NA,NA,NA,NA,NA,2004,November,2014,November,0,1,0,0,No
characterization of a new member of alphacoronavirus with unique genomic features in rhinolophus bats,Wang et al.,Viruses,2019,55,1,0.018182,Rhinolophidae,Rhinolophus,Rhinolophus shameli,1,alphacoronavirus,NA,1,pooled,longitudinal,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,Yunnan,NA,NA,NA,NA,NA,NA,2004,November,2014,November,0,1,0,0,No
characterization of a new member of alphacoronavirus with unique genomic features in rhinolophus bats,Wang et al.,Viruses,2019,499,2,0.004008,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,betacoronavirus,Sarbecovirus,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,"Guangdong, Guizhou, Hainan, Henan, Jiangsu, Yunnan, Zhejiang",NA,NA,NA,NA,NA,NA,2004,November,2014,November,0,1,0,0,No
characterization of a new member of alphacoronavirus with unique genomic features in rhinolophus bats,Wang et al.,Viruses,2019,238,12,0.05042,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,betacoronavirus,Sarbecovirus,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,"Beijing, Fujian, Gansu, Guizhou, Hebei, Henan, Shandong, Shanxi, Yunnan",NA,NA,NA,NA,NA,NA,2004,November,2014,November,0,1,0,0,No
characterization of a new member of alphacoronavirus with unique genomic features in rhinolophus bats,Wang et al.,Viruses,2019,31,1,0.032258,Rhinolophidae,Rhinolophus,Rhinolophus macrotis,1,betacoronavirus,Sarbecovirus,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,"Chongqing, Guangdong, Guangxi, Hebei, Hubei, Jiangsu, Beijing, Yunnan",NA,NA,NA,NA,NA,NA,2004,November,2014,November,0,1,0,0,No
characterization of a new member of alphacoronavirus with unique genomic features in rhinolophus bats,Wang et al.,Viruses,2019,283,2,0.007067,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,betacoronavirus,Sarbecovirus,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,"Fujian, Guangdong, Guangxi, Hebei, Henan, Hubei, Jiangsu, Shandong",NA,NA,NA,NA,NA,NA,2004,November,2014,November,0,1,0,0,No
characterization of a new member of alphacoronavirus with unique genomic features in rhinolophus bats,Wang et al.,Viruses,2019,740,72,0.097297,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,Sarbecovirus,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,"Fujian, Guangdong, Guangxi, Guizhou, Hainan, Hubei, Hunan, Jiangsu, Sichuan, Yunnan, Zhejiang",NA,NA,NA,NA,NA,NA,2004,November,2014,November,0,1,0,0,No
characterization of a new member of alphacoronavirus with unique genomic features in rhinolophus bats,Wang et al.,Viruses,2019,499,3,0.006012,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,alphacoronavirus,NA,btcov/rh/yn2012,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,"Guangdong, Guizhou, Hainan, Henan, Jiangsu, Yunnan, Zhejiang",NA,NA,NA,NA,NA,NA,2004,November,2014,November,0,1,0,0,No
characterization of a new member of alphacoronavirus with unique genomic features in rhinolophus bats,Wang et al.,Viruses,2019,55,2,0.036364,Rhinolophidae,Rhinolophus,Rhinolophus shameli,1,alphacoronavirus,NA,RshBtCoV/4017-1,pooled,longitudinal,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,Yunnan,NA,NA,NA,NA,NA,NA,2004,November,2014,November,0,1,0,0,No
circulation of group 2 coronaviruses in a bat species common to urban areas in western europe,Reusken et al.,Vector Borne Zoonotic Dis,2010,1,0,0,Vespertilionidae,Eptesicus,Eptesicus serotinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Netherlands,NA,Leidschendam,NA,NA,NA,2008,NA,NA,NA,NA,NA,1,1,1,1,No
circulation of group 2 coronaviruses in a bat species common to urban areas in western europe,Reusken et al.,Vector Borne Zoonotic Dis,2010,4,0,0,Vespertilionidae,Myotis,Myotis bechsteinii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Netherlands,NA,Maastricht-west,NA,NA,NA,2008,NA,NA,NA,NA,NA,1,1,1,1,No
circulation of group 2 coronaviruses in a bat species common to urban areas in western europe,Reusken et al.,Vector Borne Zoonotic Dis,2010,2,0,0,Vespertilionidae,Myotis,Myotis brandtii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Netherlands,NA,"Veldhuizen,  Berg en Terblijt",NA,NA,NA,2008,NA,NA,NA,NA,NA,1,1,1,1,No
circulation of group 2 coronaviruses in a bat species common to urban areas in western europe,Reusken et al.,Vector Borne Zoonotic Dis,2010,50,8,0.16,Vespertilionidae,Myotis,Myotis daubentonii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Netherlands,NA,"Noordwijkerhout, Stompwijk, Rijswijk, Waversveen, Woerdense verlaat, Beekermark-Zeddam, Maastricht-west, Berg en Terblijt, Geulhem, Sibbe",NA,NA,NA,2008,NA,NA,NA,NA,NA,1,1,1,1,No
circulation of group 2 coronaviruses in a bat species common to urban areas in western europe,Reusken et al.,Vector Borne Zoonotic Dis,2010,105,20,0.190476,Vespertilionidae,Myotis,Myotis dasycneme,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Netherlands,NA,"Tollebeek, Stokkelaarsbrug, Almere, Stompwijk, Waversveen, Papenveer, Ter Aar, Woerdense verlaat, Reeuwijk, Gouda",NA,NA,NA,2008,NA,NA,NA,NA,NA,1,1,1,1,No
circulation of group 2 coronaviruses in a bat species common to urban areas in western europe,Reusken et al.,Vector Borne Zoonotic Dis,2010,6,0,0,Vespertilionidae,Myotis,Myotis emarginatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Netherlands,NA,"Maastricht-west, Meerssen, Berg en Terblijt,  Sibbe",NA,NA,NA,2008,NA,NA,NA,NA,NA,1,1,1,1,No
circulation of group 2 coronaviruses in a bat species common to urban areas in western europe,Reusken et al.,Vector Borne Zoonotic Dis,2010,1,0,0,Vespertilionidae,Myotis,Myotis myotis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Netherlands,NA,Meerssen,NA,NA,NA,2008,NA,NA,NA,NA,NA,1,1,1,1,No
circulation of group 2 coronaviruses in a bat species common to urban areas in western europe,Reusken et al.,Vector Borne Zoonotic Dis,2010,3,0,0,Vespertilionidae,Myotis,Myotis mystacinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Netherlands,NA,"Veldhuizen, Zeddam, Doetinchem–Slangenburg",NA,NA,NA,2008,NA,NA,NA,NA,NA,1,1,1,1,No
circulation of group 2 coronaviruses in a bat species common to urban areas in western europe,Reusken et al.,Vector Borne Zoonotic Dis,2010,2,0,0,Vespertilionidae,Myotis,Myotis nattereri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Netherlands,NA,"Veldhuizen, Meerssen",NA,NA,NA,2008,NA,NA,NA,NA,NA,1,1,1,1,No
circulation of group 2 coronaviruses in a bat species common to urban areas in western europe,Reusken et al.,Vector Borne Zoonotic Dis,2010,14,5,0.357143,Vespertilionidae,Nyctalus,Nyctalus noctula,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Netherlands,NA,"Noordwijkerhout, Wassenaar, Scheveningen, Den Haag",NA,NA,NA,2008,NA,NA,NA,NA,NA,1,1,1,1,No
circulation of group 2 coronaviruses in a bat species common to urban areas in western europe,Reusken et al.,Vector Borne Zoonotic Dis,2010,8,0,0,Vespertilionidae,Pipistrellus,Pipistrellus nathusii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Netherlands,NA,"Lisse, Noordwijk aan Zee, Noordwijkerhout, Wassenaar",NA,NA,NA,2008,NA,NA,NA,NA,NA,1,1,1,1,No
circulation of group 2 coronaviruses in a bat species common to urban areas in western europe,Reusken et al.,Vector Borne Zoonotic Dis,2010,8,1,0.125,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Netherlands,NA,"Noordwijkerhout, 's Gravenland, Doetinchem–De Huet, Doetinchem–Wijnbergen",NA,NA,NA,2008,NA,NA,NA,NA,NA,1,1,1,1,No
circulation of group 2 coronaviruses in a bat species common to urban areas in western europe,Reusken et al.,Vector Borne Zoonotic Dis,2010,8,1,0.125,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,betacoronavirus,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Netherlands,NA,"Noordwijkerhout, 's Gravenland, Doetinchem–De Huet, Doetinchem–Wijnbergen",NA,NA,NA,2008,NA,NA,NA,NA,NA,1,1,1,1,No
circulation of group 2 coronaviruses in a bat species common to urban areas in western europe,Reusken et al.,Vector Borne Zoonotic Dis,2010,7,0,0,Vespertilionidae,Plecotus,Plecotus auritus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Netherlands,NA,"’s Gravenland, ’s Gravenland, Veldhuizen, Beekermark-Zeddam, Doetinchem–Slangenburg, Meerssen",NA,NA,NA,2008,NA,NA,NA,NA,NA,1,1,1,1,No
"close relative of human middle east respiratory syndrome coronavirus in bat, south africa",Ithete et al.,Emerg Infect Dis,2013,1,1,1,Vespertilionidae,Neoromicia,Neoromicia zuluensis,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,South Africa,NA,NA,NA,NA,NA,2011,NA,NA,NA,NA,NA,1,1,1,1,No
coexistence of multiple coronaviruses in several bat colonies in an abandoned mineshaft,Ge et al.,Virol Sin,2016,45,16,0.355556,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,alphacoronavirus,NA,"Miniopterus bat coronavirus 1 (3), Rhinolophus bat coronavirus HKU2 (6), Miniopterus bat coronavirus HKU8 (7)",pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,mineshaft in Mojing County,NA,NA,NA,NA,NA,2012,August,2013,July,1,1,0,1,No
coexistence of multiple coronaviruses in several bat colonies in an abandoned mineshaft,Ge et al.,Virol Sin,2016,45,3,0.066667,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,coinfection,NA,"1/HKU8 (1), HKU8/unclassified alphaCoV (1), HKU2/unclassified alphaCoV (1)",pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,mineshaft in Mojing County,NA,NA,NA,NA,NA,2012,August,2013,July,1,1,0,1,No
coexistence of multiple coronaviruses in several bat colonies in an abandoned mineshaft,Ge et al.,Virol Sin,2016,106,33,0.311321,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,alphacoronavirus,NA,"Rhinolophus bat coronavirus HKU2 (29), Miniopterus bat coronavirus HKU8 (4)",pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,mineshaft in Mojing County,NA,NA,NA,NA,NA,2012,August,2013,July,1,1,0,1,No
coexistence of multiple coronaviruses in several bat colonies in an abandoned mineshaft,Ge et al.,Virol Sin,2016,106,1,0.009434,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,betacoronavirus,Sarbecovirus,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,mineshaft in Mojing County,NA,NA,NA,NA,NA,2012,August,2013,July,1,1,0,1,No
coexistence of multiple coronaviruses in several bat colonies in an abandoned mineshaft,Ge et al.,Virol Sin,2016,106,1,0.009434,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,coinfection,NA,HKU2/unclassified alphaCoV,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,mineshaft in Mojing County,NA,NA,NA,NA,NA,2012,August,2013,July,1,1,0,1,No
coexistence of multiple coronaviruses in several bat colonies in an abandoned mineshaft,Ge et al.,Virol Sin,2016,8,3,0.375,Hipposideridae,Hipposideros,Hipposideros pomona,1,alphacoronavirus,NA,HKU10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,mineshaft in Mojing County,NA,NA,NA,NA,NA,2012,August,2013,July,1,1,0,1,No
coexistence of multiple coronaviruses in several bat colonies in an abandoned mineshaft,Ge et al.,Virol Sin,2016,8,1,0.125,Hipposideridae,Hipposideros,Hipposideros pomona,1,coinfection,NA,HKU10/unclassified betaCoV,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,mineshaft in Mojing County,NA,NA,NA,NA,NA,2012,August,2013,July,1,1,0,1,No
coexistence of multiple coronaviruses in several bat colonies in an abandoned mineshaft,Ge et al.,Virol Sin,2016,86,58,0.674419,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,alphacoronavirus,NA,"Miniopterus bat coronavirus 1 (28), Miniopterus bat coronavirus HKU7 (1), Miniopterus bat coronavirus HKU8 (29)",pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,mineshaft in Mojing County,NA,NA,NA,NA,NA,2012,August,2013,July,1,1,0,1,No
coexistence of multiple coronaviruses in several bat colonies in an abandoned mineshaft,Ge et al.,Virol Sin,2016,86,5,0.05814,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,coinfection,NA,1/HKU8,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,mineshaft in Mojing County,NA,NA,NA,NA,NA,2012,August,2013,July,1,1,0,1,No
coexistence of multiple coronaviruses in several bat colonies in an abandoned mineshaft,Ge et al.,Virol Sin,2016,26,12,0.461538,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,alphacoronavirus,NA,Miniopterus bat coronavirus 1,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,mineshaft in Mojing County,NA,NA,NA,NA,NA,2012,August,2013,July,1,1,0,1,No
coexistence of multiple coronaviruses in several bat colonies in an abandoned mineshaft,Ge et al.,Virol Sin,2016,26,3,0.115385,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,coinfection,NA,1/HKU8,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,mineshaft in Mojing County,NA,NA,NA,NA,NA,2012,August,2013,July,1,1,0,1,No
coexistence of multiple coronaviruses in several bat colonies in an abandoned mineshaft,Ge et al.,Virol Sin,2016,5,2,0.4,Miniopteridae,Miniopterus,Miniopterus fuscus,1,alphacoronavirus,NA,Miniopterus bat coronavirus HKU8,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,mineshaft in Mojing County,NA,NA,NA,NA,NA,2012,August,2013,July,1,1,0,1,No
coexistence of multiple coronaviruses in several bat colonies in an abandoned mineshaft,Ge et al.,Virol Sin,2016,5,1,0.2,Miniopteridae,Miniopterus,Miniopterus fuscus,1,coinfection,NA,HKU8/unclassified alphaCoV,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,mineshaft in Mojing County,NA,NA,NA,NA,NA,2012,August,2013,July,1,1,0,1,No
complete genome sequence of bat coronavirus hku2 from chinese horseshoe bats revealed a much smaller spike gene with a different evolutionary lineage from the rest of the genome,Lau et al.,Virology,2007,348,29,0.083333,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,alphacoronavirus,NA,HKU2,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2004,April,2006,April,1,1,1,1,Yes
complete genome sequence of bat coronavirus hku2 from chinese horseshoe bats revealed a much smaller spike gene with a different evolutionary lineage from the rest of the genome,Lau et al.,Virology,2007,348,29,0.083333,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,Sarbecovirus,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2004,April,2006,April,1,1,1,1,Yes
complete genome sequence of bat coronavirus hku2 from chinese horseshoe bats revealed a much smaller spike gene with a different evolutionary lineage from the rest of the genome,Lau et al.,Virology,2007,64,6,0.09375,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,alphacoronavirus,NA,HKU2,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Guangdong,NA,NA,NA,NA,NA,NA,2004,April,2006,April,1,1,1,1,Yes
complete genome sequence of bat coronavirus hku2 from chinese horseshoe bats revealed a much smaller spike gene with a different evolutionary lineage from the rest of the genome,Lau et al.,Virology,2007,64,1,0.015625,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,Sarbecovirus,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Guangdong,NA,NA,NA,NA,NA,NA,2004,April,2006,April,1,1,1,1,Yes
complete genome sequence of bat coronavirus hku2 from chinese horseshoe bats revealed a much smaller spike gene with a different evolutionary lineage from the rest of the genome,Lau et al.,Virology,2007,64,1,0.015625,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,coinfection,NA,HKU2/SARS,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Guangdong,NA,NA,NA,NA,NA,NA,2004,April,2006,April,1,1,1,1,Yes
complete genome sequence of bat coronavirus hku2 from chinese horseshoe bats revealed a much smaller spike gene with a different evolutionary lineage from the rest of the genome,Lau et al.,Virology,2007,348,0,0,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2004,April,2006,April,1,1,1,1,Yes
complete genome sequence of bat coronavirus hku2 from chinese horseshoe bats revealed a much smaller spike gene with a different evolutionary lineage from the rest of the genome,Lau et al.,Virology,2007,64,0,0,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,China,Guangdong,NA,NA,NA,NA,NA,NA,2004,April,2006,April,1,1,1,1,Yes
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,56,1,0.017857,Vespertilionidae,Pipistrellus,Pipistrellus kuhlii,1,alphacoronavirus,NA,Pkuh605_IT_14,single,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,NA,NA,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,56,1,0.017857,Vespertilionidae,Pipistrellus,Pipistrellus kuhlii,1,genus not specified,NA,NA,single,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Italy,Piedmont + Liguria,pool of 43 sites in Northern Italy,NA,NA,NA,NA,NA,2013,NA,2016,NA,1,1,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,20,1,0.05,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,genus not specified,NA,NA,single,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Italy,Piedmont + Liguria,pool of 43 sites in Northern Italy,NA,NA,NA,NA,NA,2013,NA,2016,NA,1,1,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,20,1,0.05,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,alphacoronavirus,NA,Ppip1015C_IT_14,single,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,urinary,swab,Italy,Vercelli,Trino,NA,NA,NA,2014,August,NA,NA,NA,NA,1,0,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,20,1,0.05,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,alphacoronavirus,NA,Ppip1016_IT_14,single,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Vercelli,Trino,NA,NA,NA,2014,August,NA,NA,NA,NA,1,0,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,20,1,0.05,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,alphacoronavirus,NA,Ppip1000_IT_14,single,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Verbano-Cusio-Ossola,Baceno,NA,NA,NA,2014,August,NA,NA,NA,NA,1,0,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,2,0,0,Vespertilionidae,Pipistrellus,Pipistrellus nathusii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Italy,Piedmont + Liguria,pool of 43 sites in Northern Italy,NA,NA,NA,NA,NA,2013,NA,2016,NA,1,1,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,43,2,0.046512,Vespertilionidae,Myotis,Myotis myotis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Italy,Piedmont + Liguria,pool of 43 sites in Northern Italy,NA,NA,NA,NA,NA,2013,NA,2016,NA,1,1,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,43,1,0.023256,Vespertilionidae,Myotis,Myotis myotis,1,alphacoronavirus,NA,Mmyo4658_IT_16,single,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Cuneo,Santa Vittoria d’Alba,NA,NA,NA,2016,August,NA,NA,NA,NA,1,0,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,43,1,0.023256,Vespertilionidae,Myotis,Myotis myotis,1,alphacoronavirus,NA,Mmyo4663_IT_16,single,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,NA,NA,NA,NA,NA,2016,NA,NA,NA,NA,NA,1,1,1,1,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,1,0,0,Vespertilionidae,Myotis,Myotis brandtii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Italy,Piedmont + Liguria,pool of 43 sites in Northern Italy,NA,NA,NA,NA,NA,2013,NA,2016,NA,1,1,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,1,0,0,Vespertilionidae,Myotis,Myotis bechsteinii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Italy,Piedmont + Liguria,pool of 43 sites in Northern Italy,NA,NA,NA,NA,NA,2013,NA,2016,NA,1,1,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,22,1,0.045455,Vespertilionidae,Myotis,Myotis nattereri,1,alphacoronavirus,NA,Mnat560_IT_13,single,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Cuneo,Ormea,NA,NA,NA,NA,August,2013,NA,NA,NA,1,0,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,22,1,0.045455,Vespertilionidae,Myotis,Myotis nattereri,1,alphacoronavirus,NA,Mnat562_IT_13,single,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,urinary,swab,Italy,Cuneo,Ormea,NA,NA,NA,NA,August,2013,NA,NA,NA,1,0,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,22,1,0.045455,Vespertilionidae,Myotis,Myotis nattereri,1,alphacoronavirus,NA,Mnat1021_IT_14,single,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Torino,Verrua Savoia,NA,NA,NA,NA,August,2014,NA,NA,NA,1,0,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,24,2,0.083333,Vespertilionidae,Myotis,Myotis daubentonii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Italy,Piedmont + Liguria,pool of 43 sites in Northern Italy,NA,NA,NA,NA,NA,2013,NA,2016,NA,1,1,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,29,0,0,Vespertilionidae,Myotis,Myotis emarginatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Italy,Piedmont + Liguria,pool of 43 sites in Northern Italy,NA,NA,NA,NA,NA,2013,NA,2016,NA,1,1,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,23,1,0.043478,Vespertilionidae,Myotis,Myotis blythii,1,genus not specified,NA,NA,single,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Italy,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,23,1,0.043478,Vespertilionidae,Myotis,Myotis blythii,1,alphacoronavirus,NA,Moxy4235_IT_16,single,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Savona,Finale Ligure,NA,NA,NA,NA,July,2016,NA,NA,NA,1,0,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,3,0,0,Vespertilionidae,Myotis,Myotis mystacinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Italy,Piedmont + Liguria,pool of 43 sites in Northern Italy,NA,NA,NA,NA,NA,2013,NA,2016,NA,1,1,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,5,0,0,Vespertilionidae,Pipistrellus,Pipistrellus savii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Italy,Piedmont + Liguria,pool of 43 sites in Northern Italy,NA,NA,NA,NA,NA,2013,NA,2016,NA,1,1,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,14,1,0.071429,Vespertilionidae,Plecotus,Plecotus auritus,1,betacoronavirus,NA,Paur4241_IT_16,single,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Cuneo,Garessio,NA,NA,NA,2016,September,NA,NA,NA,NA,0,1,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,1,0,0,Vespertilionidae,Plecotus,Plecotus austriacus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Italy,Piedmont + Liguria,pool of 43 sites in Northern Italy,NA,NA,NA,NA,NA,2013,NA,2016,NA,1,1,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,1,0,0,Vespertilionidae,Plecotus,Plecotus macrobullaris,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Italy,Piedmont + Liguria,pool of 43 sites in Northern Italy,NA,NA,NA,NA,NA,2013,NA,2016,NA,1,1,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,17,0,0,Vespertilionidae,Barbastella,Barbastella barbastellus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Italy,Piedmont + Liguria,pool of 43 sites in Northern Italy,NA,NA,NA,NA,NA,2013,NA,2016,NA,1,1,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,1,0,0,Vespertilionidae,Nyctalus,Nyctalus leisleri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Italy,Piedmont + Liguria,pool of 43 sites in Northern Italy,NA,NA,NA,NA,NA,2013,NA,2016,NA,1,1,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,38,9,0.236842,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Italy,Piedmont + Liguria,pool of 43 sites in Northern Italy,NA,NA,NA,NA,NA,2013,NA,2016,NA,1,1,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,38,1,0.026316,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,alphacoronavirus,NA,Rfer4009_IT_16,single,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Cuneo,Villar San Costanzo,NA,NA,NA,2016,July,NA,NA,NA,NA,1,0,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,38,4,0.105263,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,alphacoronavirus,NA,"Rfer4011_IT_16 (1), Rfer4015_IT_16 (1), Rfer4024_IT_16 (1), Rfer4025_IT_16 (1)",single,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,NA,NA,NA,NA,NA,2016,NA,NA,NA,NA,NA,1,1,1,1,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,38,3,0.078947,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,betacoronavirus,NA,"Rfer4019_IT_16 (1), Rfer4027_IT_16 (1), Rfer4075_IT_16 (1)",single,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,NA,NA,NA,NA,NA,2016,NA,NA,NA,NA,NA,1,1,1,1,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,38,1,0.026316,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,betacoronavirus,NA,Rfer4074_IT_16,single,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Alessandria,Vignale Monferrato,NA,NA,NA,2016,July,NA,NA,NA,NA,1,0,0,0,No
coronavirus and paramyxovirus in bats from northwest italy,Rizzo et al.,Bmc Vet Res,2017,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus hipposideros,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,end point PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Italy,Piedmont + Liguria,pool of 43 sites in Northern Italy,NA,NA,NA,NA,NA,2013,NA,2016,NA,1,1,0,0,No
coronaviruses in bent-winged bats (miniopterus spp.),Chu et al.,J Gen Virol,2006,25,3,0.12,Miniopteridae,Miniopterus,Miniopterus magnater,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,hemi-nested PCR",multiple,RdRp,RdRp,pooled swabs/samples,pooled,China,Hong Kong,abandoned mine cave,NA,NA,NA,NA,June,2005,NA,NA,NA,1,0,0,0,No
coronaviruses in bent-winged bats (miniopterus spp.),Chu et al.,J Gen Virol,2006,44,1,0.022727,Miniopteridae,Miniopterus,Miniopterus magnater,1,betacoronavirus,Sarbecovirus,NA,pooled,cross-sectional,PCR,"RT-PCR,hemi-nested PCR",multiple,RdRp,RdRp,pooled swabs/samples,pooled,China,Hong Kong,abandoned mine cave,NA,NA,NA,NA,August,2005,NA,NA,NA,1,0,0,0,No
coronaviruses in bent-winged bats (miniopterus spp.),Chu et al.,J Gen Virol,2006,44,10,0.227273,Miniopteridae,Miniopterus,Miniopterus magnater,1,alphacoronavirus,NA,"? (9), HKU8 (1)",pooled,cross-sectional,PCR,"RT-PCR,hemi-nested PCR",multiple,RdRp,RdRp,pooled swabs/samples,pooled,China,Hong Kong,abandoned mine cave,NA,NA,NA,NA,August,2005,NA,NA,NA,1,0,0,0,No
coronaviruses in bent-winged bats (miniopterus spp.),Chu et al.,J Gen Virol,2006,1,0,0,Miniopteridae,Miniopterus,Miniopterus pusillus,1,genus not specified,NA,NA,single,cross-sectional,PCR,"RT-PCR,hemi-nested PCR",multiple,RdRp,RdRp,pooled swabs/samples,pooled,China,Hong Kong,abandoned mine cave,NA,NA,NA,NA,August,2005,NA,NA,NA,1,0,0,0,No
coronaviruses in bent-winged bats (miniopterus spp.),Chu et al.,J Gen Virol,2006,25,3,0.12,Miniopteridae,Miniopterus,Miniopterus magnater,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,hemi-nested PCR",multiple,RdRp,RdRp,pooled swabs/samples,pooled,China,Hong Kong,abandoned mine cave,NA,NA,NA,NA,December,2005,NA,NA,NA,0,0,1,0,No
coronaviruses in bent-winged bats (miniopterus spp.),Chu et al.,J Gen Virol,2006,11,2,0.181818,Miniopteridae,Miniopterus,Miniopterus pusillus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,hemi-nested PCR",multiple,RdRp,RdRp,pooled swabs/samples,pooled,China,Hong Kong,abandoned mine cave,NA,NA,NA,NA,December,2005,NA,NA,NA,0,0,1,0,No
coronaviruses in bent-winged bats (miniopterus spp.),Chu et al.,J Gen Virol,2006,20,0,0,Miniopteridae,Miniopterus,Miniopterus magnater,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,hemi-nested PCR",multiple,RdRp,RdRp,pooled swabs/samples,pooled,China,Hong Kong,abandoned mine cave,NA,NA,NA,NA,March,2006,NA,NA,NA,0,0,0,1,No
coronaviruses in bent-winged bats (miniopterus spp.),Chu et al.,J Gen Virol,2006,10,2,0.2,Miniopteridae,Miniopterus,Miniopterus pusillus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,hemi-nested PCR",multiple,RdRp,RdRp,pooled swabs/samples,pooled,China,Hong Kong,abandoned mine cave,NA,NA,NA,NA,March,2006,NA,NA,NA,0,0,0,1,No
coronaviruses in bent-winged bats (miniopterus spp.),Chu et al.,J Gen Virol,2006,10,3,0.3,Miniopteridae,Miniopterus,Miniopterus pusillus,1,alphacoronavirus,NA,HKU8,pooled,cross-sectional,PCR,"RT-PCR,hemi-nested PCR",multiple,RdRp,RdRp,pooled swabs/samples,pooled,China,Hong Kong,abandoned mine cave,NA,NA,NA,NA,March,2006,NA,NA,NA,0,0,0,1,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,26,4,0.153846,Phyllostomidae,Artibeus,Artibeus lituratus,1,genus not specified,NA,"Mex_CoV-5b, Mex_CoV-11b",pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,Reserva de la Biosfera Calakmul -Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,28,1,0.035714,Phyllostomidae,Artibeus,Artibeus lituratus,1,betacoronavirus,NA,Mex_CoV-11a,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,"Reserva de la Biosfera Calakmul -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,16,0,0,Phyllostomidae,Artibeus,Artibeus lituratus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,38,0,0,Phyllostomidae,Artibeus,Artibeus lituratus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,"Reserva de la Biosfera Montes Azules -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,21,1,0.047619,Phyllostomidae,Dermanura,Dermanura phaeotis,1,betacoronavirus,NA,Mex_CoV-11b,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,Reserva de la Biosfera Calakmul -Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,3,0,0,Phyllostomidae,Dermanura,Dermanura phaeotis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,"Reserva de la Biosfera Calakmul -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,3,2,0.666667,Phyllostomidae,Dermanura,Dermanura phaeotis,1,betacoronavirus,NA,"Mex_CoV-11a, Mex_CoV-11b",pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,9,0,0,Phyllostomidae,Dermanura,Dermanura phaeotis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,"Reserva de la Biosfera Montes Azules -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,33,2,0.060606,Phyllostomidae,Artibeus,Artibeus jamaicensis,1,alphacoronavirus,NA,Mex_CoV-5b,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,Reserva de la Biosfera Calakmul -Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,23,1,0.043478,Phyllostomidae,Artibeus,Artibeus jamaicensis,1,alphacoronavirus,NA,Mex_CoV-4,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,"Reserva de la Biosfera Calakmul -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,17,2,0.117647,Phyllostomidae,Artibeus,Artibeus jamaicensis,1,alphacoronavirus,NA,Mex_CoV-5a,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,20,0,0,Phyllostomidae,Artibeus,Artibeus jamaicensis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,"Reserva de la Biosfera Montes Azules -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,5,0,0,Phyllostomidae,Dermanura,Dermanura watsoni,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,Reserva de la Biosfera Calakmul -Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,3,0,0,Phyllostomidae,Dermanura,Dermanura watsoni,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,"Reserva de la Biosfera Calakmul -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,7,0,0,Phyllostomidae,Dermanura,Dermanura watsoni,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,2,0,0,Phyllostomidae,Dermanura,Dermanura watsoni,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,"Reserva de la Biosfera Montes Azules -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,0,0,Phyllostomidae,Glossophaga,Glossophaga soricina,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,Reserva de la Biosfera Calakmul -Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,8,0,0,Phyllostomidae,Glossophaga,Glossophaga soricina,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,"Reserva de la Biosfera Calakmul -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,12,0,0,Phyllostomidae,Glossophaga,Glossophaga soricina,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,27,0,0,Phyllostomidae,Glossophaga,Glossophaga soricina,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,"Reserva de la Biosfera Montes Azules -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,2,0,0,Phyllostomidae,Glossophaga,Glossophaga commissarisi,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,0,0,Phyllostomidae,Glossophaga,Glossophaga commissarisi,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,"Reserva de la Biosfera Montes Azules -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,27,0,0,Phyllostomidae,Carollia,Carollia sowelli,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,Reserva de la Biosfera Calakmul -Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,14,4,0.285714,Phyllostomidae,Carollia,Carollia sowelli,1,alphacoronavirus,NA,"Mex_CoV-1, Mex_CoV-2, Mex_CoV-5b",pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,"Reserva de la Biosfera Calakmul -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,11,1,0.090909,Phyllostomidae,Carollia,Carollia sowelli,1,alphacoronavirus,NA,Mex_CoV-5a,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,20,2,0.1,Phyllostomidae,Carollia,Carollia sowelli,1,alphacoronavirus,NA,Mex_CoV-1,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,"Reserva de la Biosfera Montes Azules -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,8,0,0,Phyllostomidae,Carollia,Carollia perspicillata,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,Reserva de la Biosfera Calakmul -Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,4,2,0.5,Phyllostomidae,Carollia,Carollia perspicillata,1,alphacoronavirus,NA,Mex_CoV-1,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,"Reserva de la Biosfera Calakmul -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,0,0,Phyllostomidae,Carollia,Carollia perspicillata,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,8,0,0,Phyllostomidae,Carollia,Carollia perspicillata,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,"Reserva de la Biosfera Montes Azules -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,7,0,0,Phyllostomidae,Sturnira,Sturnira ludovici,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,16,0,0,Phyllostomidae,Sturnira,Sturnira ludovici,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,"Reserva de la Biosfera Montes Azules -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,6,0,0,Phyllostomidae,Sturnira,Sturnira lilium,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,Reserva de la Biosfera Calakmul -Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,6,0,0,Phyllostomidae,Sturnira,Sturnira lilium,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,"Reserva de la Biosfera Calakmul -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,22,0,0,Phyllostomidae,Sturnira,Sturnira lilium,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,"Reserva de la Biosfera Montes Azules -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,2,0,0,Phyllostomidae,Leptonycteris,Leptonycteris nivalis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Distrito Federal,Mexico City,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,0,0,Phyllostomidae,Leptonycteris,Leptonycteris yerbabuenae,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Distrito Federal,Mexico City,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,0,0,Phyllostomidae,Centurio,Centurio senex,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,Reserva de la Biosfera Calakmul -Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,3,0,0,Phyllostomidae,Centurio,Centurio senex,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,"Reserva de la Biosfera Calakmul -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,0,0,Phyllostomidae,Platyrrhinus,Platyrrhinus helleri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,"Reserva de la Biosfera Calakmul -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,5,0,0,Phyllostomidae,Platyrrhinus,Platyrrhinus helleri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,10,0,0,Phyllostomidae,Platyrrhinus,Platyrrhinus helleri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,"Reserva de la Biosfera Montes Azules -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,0,0,Phyllostomidae,Uroderma,Uroderma bilobatum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,"Reserva de la Biosfera Calakmul -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,2,0,0,Phyllostomidae,Uroderma,Uroderma bilobatum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,2,0,0,Phyllostomidae,Uroderma,Uroderma bilobatum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,"Reserva de la Biosfera Montes Azules -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,3,0,0,Phyllostomidae,Desmodus,Desmodus rotundus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,4,0,0,Phyllostomidae,Desmodus,Desmodus rotundus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,"Reserva de la Biosfera Montes Azules -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,3,0,0,Phyllostomidae,Micronycteris,Micronycteris schmidtorum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,2,0,0,Phyllostomidae,Micronycteris,Micronycteris schmidtorum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,"Reserva de la Biosfera Montes Azules -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,0,0,Phyllostomidae,Micronycteris,Micronycteris microtis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,0,0,Phyllostomidae,Mimon,Mimon cozumelae,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,2,0,0,Phyllostomidae,Phyllostomus,Phyllostomus discolor,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,"Reserva de la Biosfera Montes Azules -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,6,0,0,Phyllostomidae,Choeroniscus,Choeroniscus godmani,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,"Reserva de la Biosfera Montes Azules -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,0,0,Phyllostomidae,Trachops,Trachops cirrhosus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,0,0,Phyllostomidae,Trachops,Trachops cirrhosus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,"Reserva de la Biosfera Montes Azules -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,0,0,Phyllostomidae,Tonatia,Tonatia saurophila,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,2,0,0,Phyllostomidae,Chrotopterus,Chrotopterus auritus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,1,1,Phyllostomidae,Lonchorhina,Lonchorhina aurita,1,alphacoronavirus,NA,Mex_CoV-3,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,2,0,0,Phyllostomidae,Phylloderma,Phylloderma stenops,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,9,0,0,Mormoopidae,Mormoops,Mormoops megalophylla,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,Reserva de la Biosfera Calakmul -Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,2,0,0,Mormoopidae,Mormoops,Mormoops megalophylla,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,"Reserva de la Biosfera Montes Azules -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,0,0,Mormoopidae,Pteronotus,Pteronotus davyi,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,Reserva de la Biosfera Calakmul -Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,0,0,Mormoopidae,Pteronotus,Pteronotus davyi,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,1,1,Mormoopidae,Pteronotus,Pteronotus parnellii,1,betacoronavirus,NA,Mex_CoV-10,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,Reserva de la Biosfera Calakmul -Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,0,0,Mormoopidae,Pteronotus,Pteronotus parnellii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,"Reserva de la Biosfera Calakmul -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,10,0,0,Mormoopidae,Pteronotus,Pteronotus parnellii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,7,0,0,Mormoopidae,Pteronotus,Pteronotus parnellii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,"Reserva de la Biosfera Montes Azules -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,10,0,0,Molossidae,Nyctinomops,Nyctinomops macrotis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Distrito Federal,Mexico City,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,5,1,0.2,Molossidae,Nyctinomops,Nyctinomops laticaudatus,1,betacoronavirus,NA,Mex_CoV-9,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,Reserva de la Biosfera Calakmul -Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,10,3,0.3,Molossidae,Tadarida,Tadarida brasiliensis,1,betacoronavirus,NA,Mex_CoV-9,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Distrito Federal,Mexico City,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,7,3,0.428571,Vespertilionidae,Myotis,Myotis velifer,1,alphacoronavirus,NA,Mex_CoV-7,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Distrito Federal,Mexico City,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,0,0,Vespertilionidae,Myotis,Myotis occultus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Distrito Federal,Mexico City,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,2,0,0,Vespertilionidae,Myotis,Myotis keaysi,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,0,0,Vespertilionidae,Myotis,Myotis nigricans,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,1,1,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,alphacoronavirus,NA,Mex_CoV-6,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,"Reserva de la Biosfera Montes Azules -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,2,0,0,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Distrito Federal,Mexico City,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,0,0,Vespertilionidae,Corynorhinus,Corynorhinus mexicanus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Distrito Federal,Mexico City,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,0,0,Vespertilionidae,Lasiurus,Lasiurus intermedius,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Campeche,"Reserva de la Biosfera Calakmul -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,17,0,0,Vespertilionidae,Bauerus,Bauerus dubiaquercus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,0,0,Vespertilionidae,Bauerus,Bauerus dubiaquercus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,"Reserva de la Biosfera Montes Azules -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,0,0,Emballonuridae,Rhynchonycteris,Rhynchonycteris naso,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,Reserva de la Biosfera Montes Azules - Undisturbed forest,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses in bats from mexico,Anthony et al.,J Gen Virol,2013,1,0,0,Emballonuridae,Saccopteryx,Saccopteryx bilineata,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Mexico,Chiapas,"Reserva de la Biosfera Montes Azules -""Disturbed"" - transition forest to agriculture",NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
"coronaviruses in guano from pteropus medius bats in peradeniya, sri lanka",Kudagammana et al.,Transbound Emerg Dis,2018,50,8,0.16,Pteropodidae,Pteropus,Pteropus giganteus,1,betacoronavirus,Group D,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Sri Lanka,NA,Royal Botanical Gardens,NA,NA,NA,2014,NA,NA,February,NA,March,0,0,1,1,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,17,0,0,Pteropodidae,Epomophorus,Epomophorus labiatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,2,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,78,0,0,Molossidae,Mops,Mops condylurus,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,25,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,20,0,0,Molossidae,Mops,Mops condylurus,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,18,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,15,1,0.066667,Hipposideridae,Hipposideros,Hipposideros caffer,1,betacoronavirus,NA,PREDICT_CoV-44,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,12,NA,NA,NA,2011,NA,NA,NA,NA,NA,0,1,0,0,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,19,2,0.105263,Rhinolophidae,Rhinolophus,Rhinolophus clivosus,1,betacoronavirus,NA,PREDICT_CoV-43,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,12,NA,NA,NA,2011,NA,NA,NA,NA,NA,0,1,0,0,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,19,1,0.052632,Rhinolophidae,Rhinolophus,Rhinolophus clivosus,1,betacoronavirus,NA,PREDICT_CoV-44,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,11,NA,NA,NA,2013,NA,NA,NA,NA,NA,0,1,0,0,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,19,1,0.052632,Rhinolophidae,Rhinolophus,Rhinolophus clivosus,1,alphacoronavirus,NA,PREDICT_CoV-42,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,12,NA,NA,NA,2011,NA,NA,NA,NA,NA,0,1,0,0,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,9,0,0,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,12,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,1,0,0,Molossidae,Otomops,Otomops martiensseni,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,12,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,5,1,0.2,Rhinolophidae,Rhinolophus,Rhinolophus clivosus,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,7,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,13,0,0,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,7,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,2,0,0,Hipposideridae,Hipposideros,Hipposideros ruber,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,7,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,1,0,0,Nycteridae,Nycteris,Nycteris hispida,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,7,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,53,4,0.075472,Pteropodidae,Eidolon,Eidolon helvum,1,betacoronavirus,NA,Strain of Eidolon bat coronavirus/Kenya/KY24/2006,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,3,NA,NA,NA,NA,NA,2012,NA,NA,NA,0,1,0,0,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,15,0,0,Pteropodidae,Eidolon,Eidolon helvum,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,16,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,9,2,0.222222,Pteropodidae,Eidolon,Eidolon helvum,1,betacoronavirus,NA,Strain of Eidolon bat coronavirus/Kenya/KY24/2006,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,8,NA,NA,NA,NA,NA,2012,NA,NA,NA,0,1,0,0,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,9,6,0.666667,Pteropodidae,Eidolon,Eidolon helvum,1,betacoronavirus,NA,Strain of Eidolon bat coronavirus/Kenya/KY24/2006,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,5,NA,NA,NA,NA,NA,2013,NA,NA,NA,0,0,1,1,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,9,2,0.222222,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,betacoronavirus,NA,Strain of Bat coronavirus HKU9,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,6,NA,NA,NA,NA,NA,2013,NA,NA,NA,0,1,0,0,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,5,0,0,Vespertilionidae,Neoromicia,Neoromicia tenuipinnis,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,11,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,6,1,0.166667,Pteropodidae,Myonycteris,Myonycteris angolensis,1,betacoronavirus,NA,PREDICT_CoV-66,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,11,NA,NA,NA,NA,NA,2013,NA,NA,NA,0,1,0,0,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,1,0,0,Hipposideridae,Hipposideros,Hipposideros caffer,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,11,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,1,0,0,Pteropodidae,Rousettus,Rousettus lanosus,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,23,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,23,0,0,Pteropodidae,Myonycteris,Myonycteris angolensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,23,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,6,0,0,Pteropodidae,Epomophorus,Epomophorus labiatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,10,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,5,0,0,Pteropodidae,Rousettus,Rousettus lanosus,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,10,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,5,2,0.4,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,betacoronavirus,NA,Strain of Kenya/bat coronavirus/BtKY56/BtKY55,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,10,NA,NA,NA,NA,NA,2013,NA,NA,NA,0,1,0,0,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,5,1,0.2,Pteropodidae,Eidolon,Eidolon helvum,1,betacoronavirus,NA,Strain of Eidolon bat coronavirus/Kenya/KY24/2006,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,4,NA,NA,NA,NA,NA,2012,NA,NA,NA,0,1,0,0,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,1,0,0,Nycteridae,Nycteris,Nycteris hispida,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,22,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,3,0,0,Pteropodidae,Epomophorus,Epomophorus labiatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,22,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,1,0,0,Megadermatidae,Lavia,Lavia frons,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,22,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,1,0,0,Nycteridae,Nycteris,Nycteris hispida,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,21,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,2,0,0,Pteropodidae,Epomophorus,Epomophorus labiatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,21,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,20,0,0,Molossidae,Mops,Mops condylurus,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,24,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,8,0,0,Molossidae,Chaerephon,Chaerephon pumilus,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,20,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,12,0,0,Molossidae,Mops,Mops condylurus,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,20,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,5,0,0,Pteropodidae,Epomophorus,Epomophorus labiatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,9,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,35,0,0,Pteropodidae,Epomophorus,Epomophorus labiatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,13,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,1,0,0,Vespertilionidae,Neoromicia,Neoromicia tenuipinnis,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,13,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,2,0,0,Vespertilionidae,Neoromicia,Neoromicia zuluensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,13,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,20,0,0,Pteropodidae,Eidolon,Eidolon helvum,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,17,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,4,0,0,Vespertilionidae,Scotophilus,Scotophilus viridis,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,19,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,3,1,0.333333,Molossidae,Chaerephon,Chaerephon pumilus,1,alphacoronavirus,NA,Strain of Chaerephon bat coronavirus/Kenya/KY22/2006,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,19,NA,NA,NA,NA,NA,2013,NA,NA,NA,0,1,0,0,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,18,0,0,Pteropodidae,Epomophorus,Epomophorus labiatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,19,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,2,0,0,Pteropodidae,Epomophorus,Epomophorus labiatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,15,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,1,0,0,Vespertilionidae,Scotophilus,Scotophilus viridis,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,15,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,16,0,0,Pteropodidae,Myonycteris,Myonycteris angolensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,1,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,9,1,0.111111,Pteropodidae,Epomophorus,Epomophorus labiatus,1,betacoronavirus,NA,Strain of Kenya bat coronavirus/BtKY56/BtKY55,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,1,NA,NA,NA,NA,NA,2013,NA,NA,NA,0,1,0,0,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,1,0,0,Vespertilionidae,Scotophilus,Scotophilus viridis,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,1,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
coronaviruses detected in bats in close contact with humans in rwanda,Nziza et al.,Ecohealth,2020,6,0,0,Nycteridae,Nycteris,Nycteris hispida,1,genus not specified,NA,NA,single,cross-sectional,PCR,consensus RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Rwanda,NA,14,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
"coronavirus testing indicates transmission risk increases along wildlife supply chains for human consumption in viet nam, 2013-2014",Nguyen quynh huong et al.,Plos One,2020,45,3,0.066667,Pteropodidae,Pteropus,NA,NA,betacoronavirus,NA,PREDICT_CoV-17,pooled,cross-sectional,PCR,consensus nested-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Vietnam,Soc Trang,Natural bat roost,NA,NA,NA,NA,NA,2013,January,2014,March,1,1,1,1,No
"coronavirus testing indicates transmission risk increases along wildlife supply chains for human consumption in viet nam, 2013-2014",Nguyen quynh huong et al.,Plos One,2020,45,1,0.022222,Pteropodidae,Pteropus,NA,NA,alphacoronavirus,NA,PREDICT_CoV-35,pooled,cross-sectional,PCR,consensus nested-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Vietnam,Soc Trang,Natural bat roost,NA,NA,NA,NA,NA,2013,January,2014,March,1,1,1,1,No
"coronavirus testing indicates transmission risk increases along wildlife supply chains for human consumption in viet nam, 2013-2014",Nguyen quynh huong et al.,Plos One,2020,13,0,0,Pteropodidae,Pteropus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,consensus nested-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Vietnam,Soc Trang,Natural bat roost,NA,NA,NA,NA,NA,2013,January,2014,March,1,1,1,1,No
"coronavirus testing indicates transmission risk increases along wildlife supply chains for human consumption in viet nam, 2013-2014",Nguyen quynh huong et al.,Plos One,2020,15,0,0,Pteropodidae,Pteropus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,consensus nested-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Vietnam,Soc Trang,Natural bat roost,NA,NA,NA,NA,NA,2013,January,2014,March,1,1,1,1,No
"coronavirus testing indicates transmission risk increases along wildlife supply chains for human consumption in viet nam, 2013-2014",Nguyen quynh huong et al.,Plos One,2020,2,0,0,Pteropodidae,Pteropus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,consensus nested-PCR,multiple,RdRp,RdRp,urinary,tissue,Vietnam,Soc Trang,Natural bat roost,NA,NA,NA,NA,NA,2013,January,2014,March,1,1,1,1,No
"coronavirus testing indicates transmission risk increases along wildlife supply chains for human consumption in viet nam, 2013-2014",Nguyen quynh huong et al.,Plos One,2020,2,0,0,Pteropodidae,Cynopterus,Cynopterus horsfieldii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,consensus nested-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Vietnam,Soc Trang,Natural bat roost,NA,NA,NA,NA,NA,2013,January,2014,March,1,1,1,1,No
"coronavirus testing indicates transmission risk increases along wildlife supply chains for human consumption in viet nam, 2013-2014",Nguyen quynh huong et al.,Plos One,2020,1,0,0,Pteropodidae,Cynopterus,Cynopterus horsfieldii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,consensus nested-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Vietnam,Soc Trang,Natural bat roost,NA,NA,NA,NA,NA,2013,January,2014,March,1,1,1,1,No
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,29,0,0,Hipposideridae,Hipposideros,Hipposideros ater,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Australia,far-north Queensland,NA,NA,NA,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,27,0,0,Hipposideridae,Hipposideros,Hipposideros ater,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Australia,Northern Territory,NA,NA,NA,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,2,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Taiwan,NA,NA,NA,NA,NA,2008,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,126,1,0.007937,Hipposideridae,Rhinonicteris,Rhinonicteris aurantia,1,betacoronavirus,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Australia,Northern Territory,NA,NA,NA,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,57,0,0,Megadermatidae,Macroderma,Macroderma gigas,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Australia,Northern Territory,NA,NA,NA,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,33,4,0.121212,Pteropodidae,Pteropus,Pteropus alecto,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Australia,south-east Queensland,NA,NA,NA,NA,2009,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,27,0,0,Pteropodidae,Pteropus,Pteropus poliocephalus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Australia,south-east Queensland,NA,NA,NA,NA,2009,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,6,0,0,Pteropodidae,Rousettus,Rousettus amplexicaudatus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Indonesia,NA,NA,NA,NA,NA,NA,NA,2000,NA,2006,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,58,1,0.017241,Rhinolophidae,Rhinolophus,Rhinolophus megaphyllus,1,alphacoronavirus,NA,HKU8,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Australia,far-north Queensland,NA,NA,NA,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,448,0,0,Rhinolophidae,Rhinolophus,Rhinolophus megaphyllus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Australia,south-east Queensland,NA,NA,NA,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,41,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Taiwan,NA,NA,NA,NA,NA,2008,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,20,1,0.05,Miniopteridae,Miniopterus,Miniopterus australis,1,alphacoronavirus,NA,HKU8,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Australia,central Queensland,NA,NA,NA,NA,1996,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,30,14,0.466667,Miniopteridae,Miniopterus,Miniopterus australis,1,alphacoronavirus,NA,HKU8,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Australia,far-north Queensland,NA,NA,NA,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,154,38,0.246753,Miniopteridae,Miniopterus,Miniopterus australis,1,alphacoronavirus,NA,HKU8,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Australia,south-east Queensland,NA,NA,NA,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,59,6,0.101695,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,alphacoronavirus,NA,HKU8,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Australia,Northern Territory,NA,NA,NA,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,238,63,0.264706,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,alphacoronavirus,NA,HKU8,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Australia,south-east Queensland,NA,NA,NA,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,3,0,0,Molossidae,Mormopterus,Mormopterus beccarii,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Australia,south-east Queensland,NA,NA,NA,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,1,0,0,Molossidae,Mormopterus,Mormopterus norfolkensis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Australia,south-east Queensland,NA,NA,NA,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,31,0,0,Vespertilionidae,Myotis,Myotis macropus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Australia,far-north Queensland,NA,NA,NA,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,64,13,0.203125,Vespertilionidae,Myotis,Myotis macropus,1,alphacoronavirus,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Australia,south-east Queensland,NA,NA,NA,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,6,0,0,Vespertilionidae,Nyctophilus,Nyctophilus bifax,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Australia,south-east Queensland,NA,NA,NA,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,7,0,0,Vespertilionidae,Nyctophilus,Nyctophilus gouldi,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Australia,south-east Queensland,NA,NA,NA,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,1,0,0,Vespertilionidae,Scotorepens,Scotorepens greyii,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Australia,south-east Queensland,NA,NA,NA,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,1,0,0,Vespertilionidae,Scoteanax,Scoteanax rueppellii,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Australia,south-east Queensland,NA,NA,NA,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,4,1,0.25,Vespertilionidae,Vespadelus,Vespadelus pumilus,1,alphacoronavirus,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Australia,south-east Queensland,NA,NA,NA,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,Yes
coronavirus infection and diversity in bats in the australasian region,Smith et al.,Ecohealth,2016,31,0,0,Vespertilionidae,Vespadelus,Vespadelus troughtoni,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Australia,far-north Queensland,NA,NA,NA,NA,NA,NA,2006,NA,2009,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,2,0,0,Vespertilionidae,Eptesicus,Eptesicus hottentotus,1,genus not specified,NA,NA,single,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,North West,Taung,NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,11,0,0,Pteropodidae,Epomophorus,Epomophorus wahlbergi,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,KwaZulu Natal,"Amanzimtoti, Durban, Rocktail Bay (St. Lucia), Woodhurst (Chatsworth)",NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,1,0,0,Pteropodidae,Epomophorus,Epomophorus gambianus,1,genus not specified,NA,NA,single,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,Limpopo,"Pafuri, Kruger National Park",NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,1,0,0,Vespertilionidae,Glauconycteris,Glauconycteris variegata,1,genus not specified,NA,NA,single,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,KwaZulu Natal,"Rocktail Bay, St. Lucia",NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,2,0,0,Hipposideridae,Hipposideros,Hipposideros caffer,1,genus not specified,NA,NA,single,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,Limpopo,"Pafuri, Kruger National Park",NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,14,1,0.071429,Miniopteridae,Miniopterus,Miniopterus natalensis,1,alphacoronavirus,NA,Miniopterus-BtCoV Irene/SA/09,pooled,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,"Gauteng, Limpopo, North West","Irene Caves (Gauteng, site of positive coronavirus), Peppercorn cave in Modimole (Limpopo), Venterskroon in Thabela thabeng (North West)",NA,NA,NA,2009,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,2,0,0,Molossidae,Mops,Mops condylurus,1,genus not specified,NA,NA,single,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,Limpopo,Palaborwa,NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,2,1,0.5,Molossidae,Mops,Mops midas,1,alphacoronavirus,NA,Mops-BtCoV1364/SA/11,single,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,South Africa,Limpopo,"Makhado,",NA,NA,NA,2011,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,1,0,0,Molossidae,Chaerephon,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,Limpopo,"Pafuri, Kruger National Park",NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,3,0,0,Molossidae,Chaerephon,Chaerephon pumilus,1,genus not specified,NA,NA,single,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,KwaZulu Natal,"Rocktail Bay, St. Lucia",NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,4,0,0,Molossidae,Tadarida,Tadarida aegyptiaca,1,genus not specified,NA,NA,single,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,North West,Taung,NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,3,0,0,Mollosidae,NA,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,"Limpopo, North West","Pafuri, Kruger National Park (Limpopo) and Kgaswane (North West)",NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,10,1,0.1,Vespertilionidae,Neoromicia,Neoromicia capensis,1,alphacoronavirus,NA,Neo-BtCoV167/SA/07,pooled,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,"North West, Limpopo, Gauteng","Taung (North West, site of positive coronavirus), Pafuri, Kruger National Park (Limpopo), Free Me rehab (Gauteng)",NA,NA,NA,2007,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,7,0,0,Vespertilionidae,Neoromicia,Neoromicia nana,1,genus not specified,NA,NA,single,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,Limpopo,"Pafuri, Kruger National Park",NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,2,0,0,Vespertilionidae,Neoromicia,Neoromicia helios,1,genus not specified,NA,NA,single,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,Limpopo,"Pafuri, Kruger National Park",NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,1,0,0,Vespertilionidae,Neoromicia,Neoromicia zuluensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,Limpopo,"Pafuri, Kruger National Park",NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,2,0,0,Vespertilionidae,Neoromicia,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,Gauteng,Hennopspruit,NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,7,0,0,Vespertilionidae,Nycticeinops,Nycticeinops schlieffeni,1,genus not specified,NA,NA,single,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,Limpopo,"Pafuri, Kruger National Park",NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,2,0,0,Nycteridae,Nycteris,Nycteris thebaica,1,genus not specified,NA,NA,single,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,KwaZulu Natal,"Rocktail Bay, St. Lucia",NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,5,0,0,Rhinolophidae,Rhinolophus,Rhinolophus denti,1,genus not specified,NA,NA,single,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,North West,Taung,NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus capensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,Limpopo,"Labuschagne farm, Louis Trichard",NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus darlingi,1,genus not specified,NA,NA,single,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,North West,Taung,NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus landeri,1,genus not specified,NA,NA,single,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,Limpopo,"Pafuri, Kruger National Park",NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,2,0,0,Rhinolophidae,Rhinolophus,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,Limpopo,Makhado,NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,3,0,0,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,genus not specified,NA,NA,single,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,Limpopo,"Pafuri, Kruger National Park",NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,9,0,0,Vespertilionidae,Scotophilus,Scotophilus dinganii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,"Limpopo, North West","Pafuri, Kruger National Park (Limpopo), Kgaswane (North West)",NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,2,0,0,Vespertilionidae,Scotophilus,Scotophilus leucogaster,1,genus not specified,NA,NA,single,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,Limpopo,"Pafuri, Kruger National Park",NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,1,0,0,Vespertilionidae,Scotophilus,Scotophilus viridis,1,genus not specified,NA,NA,single,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,Limpopo,"Pafuri, Kruger National Park",NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
coronaviruses in south african bats,Geldenhuys et al.,Vector Borne Zoonotic Dis,2013,7,0,0,Vespertilionidae,Scotophilus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,double heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,South Africa,"Limpopo, North West, KwaZulu Natal","Pafuri, Kruger National Park (Limpopo), Kgaswane (North West), Rocktail Bay, St. Lucia (KwaZulu Natal)",NA,NA,NA,NA,NA,NA,NA,NA,NA,1,1,1,1,Yes
"cross-sectional surveillance of middle east respiratory syndrome coronavirus (mers-cov) in dromedary camels and other mammals in egypt, august 2015 to january 2016",Ali et al.,Eurosurveillance,2017,24,0,0,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,betacoronavirus,Merbecovirus,NA,single,cross-sectional,PCR,rtRT-PCR,single,RdRp_Other,"UpE, Orf1a, RdRp, N",oropharyngeal,swab,Egypt,NA,NA,NA,NA,NA,NA,NA,2015,NA,2016,NA,1,1,1,1,No
"cross-sectional surveillance of middle east respiratory syndrome coronavirus (mers-cov) in dromedary camels and other mammals in egypt, august 2015 to january 2016",Ali et al.,Eurosurveillance,2017,28,0,0,Vespertilionidae,Pipistrellus,Pipistrellus deserti,1,betacoronavirus,Merbecovirus,NA,single,cross-sectional,PCR,rtRT-PCR,single,RdRp_Other,"UpE, Orf1a, RdRp, N",oropharyngeal,swab,Egypt,NA,NA,NA,NA,NA,NA,NA,2015,NA,2016,NA,1,1,1,1,No
"cross-sectional surveillance of middle east respiratory syndrome coronavirus (mers-cov) in dromedary camels and other mammals in egypt, august 2015 to january 2016",Ali et al.,Eurosurveillance,2017,30,0,0,Nycteridae,Nycteris,Nycteris thebaica,1,betacoronavirus,Merbecovirus,NA,single,cross-sectional,PCR,rtRT-PCR,single,RdRp_Other,"UpE, Orf1a, RdRp, N",oropharyngeal,swab,Egypt,NA,NA,NA,NA,NA,NA,NA,2015,NA,2016,NA,1,1,1,1,No
"cross-sectional surveillance of middle east respiratory syndrome coronavirus (mers-cov) in dromedary camels and other mammals in egypt, august 2015 to january 2016",Ali et al.,Eurosurveillance,2017,27,0,0,Emballonuridae,Taphozous,Taphozous perforatus,1,betacoronavirus,Merbecovirus,NA,single,cross-sectional,PCR,rtRT-PCR,single,RdRp_Other,"UpE, Orf1a, RdRp, N",oropharyngeal,swab,Egypt,NA,NA,NA,NA,NA,NA,NA,2015,NA,2016,NA,1,1,1,1,No
detection of a virus related to betacoronaviruses in italian greater horseshoe bats,Balboni et al.,Epidemiol Infect,2011,41,2,0.04878,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,betacoronavirus,Sarbecovirus,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Modena and Foggia,NA,NA,NA,NA,2009,NA,NA,NA,NA,NA,1,1,1,1,No
detection of a virus related to betacoronaviruses in italian greater horseshoe bats,Balboni et al.,Epidemiol Infect,2011,11,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,Italy,NA,NA,NA,NA,NA,2009,NA,NA,NA,NA,NA,1,1,1,1,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,2,0,0,Vespertilionidae,Myotis,Myotis daubentonii,1,genus not specified,NA,NA,single,cross-sectional,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Vesløs - 2 individuals,NA,NA,NA,2013,NA,NA,September,NA,NA,0,1,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,2,0,0,Vespertilionidae,Myotis,Myotis daubentonii,1,genus not specified,NA,NA,single,cross-sectional,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Vesløs - 2 from nest boxes,NA,NA,NA,2013,NA,NA,September,NA,NA,0,1,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,40,8,0.2,Vespertilionidae,Myotis,Myotis daubentonii,1,alphacoronavirus,NA,NA,repeat,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Mønsted,NA,NA,NA,2013,NA,NA,October,NA,NA,0,1,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,53,9,0.169811,Vespertilionidae,Myotis,Myotis daubentonii,1,alphacoronavirus,NA,NA,repeat,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Mønsted,NA,NA,NA,2014,NA,NA,October,NA,NA,0,1,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,4,1,0.25,Vespertilionidae,Myotis,Myotis daubentonii,1,alphacoronavirus,NA,NA,repeat,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Mønsted,NA,NA,NA,2015,NA,NA,April,NA,NA,0,0,0,1,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,10,6,0.6,Vespertilionidae,Myotis,Myotis daubentonii,1,alphacoronavirus,NA,NA,repeat,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Mønsted,NA,NA,NA,2015,NA,NA,October,NA,NA,0,1,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,11,6,0.545455,Vespertilionidae,Myotis,Myotis daubentonii,1,alphacoronavirus,NA,NA,repeat,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Mønsted,NA,NA,NA,2015,NA,NA,November,NA,NA,0,1,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,5,0,0,Vespertilionidae,Myotis,Myotis daubentonii,1,genus not specified,NA,NA,repeat,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Mønsted,NA,NA,NA,2016,NA,NA,May,NA,NA,0,0,0,1,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,58,13,0.224138,Vespertilionidae,Myotis,Myotis daubentonii,1,alphacoronavirus,NA,NA,repeat,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Mønsted,NA,NA,NA,2016,NA,NA,September,NA,NA,0,1,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,2,0,0,Vespertilionidae,Myotis,Myotis daubentonii,1,genus not specified,NA,NA,repeat,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Mønsted,NA,NA,NA,2017,NA,NA,April,NA,NA,0,0,0,1,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,2,0,0,Vespertilionidae,Myotis,Myotis dasycneme,1,genus not specified,NA,NA,repeat,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Mønsted,NA,NA,NA,2013,NA,NA,October,NA,NA,0,1,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,6,0,0,Vespertilionidae,Myotis,Myotis dasycneme,1,genus not specified,NA,NA,repeat,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Mønsted,NA,NA,NA,2014,NA,NA,October,NA,NA,0,1,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,2,1,0.5,Vespertilionidae,Myotis,Myotis dasycneme,1,alphacoronavirus,NA,NA,repeat,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Mønsted,NA,NA,NA,2015,NA,NA,April,NA,NA,0,0,0,1,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,1,1,1,Vespertilionidae,Myotis,Myotis dasycneme,1,alphacoronavirus,NA,NA,repeat,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Mønsted,NA,NA,NA,2015,NA,NA,November,NA,NA,0,1,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,6,1,0.166667,Vespertilionidae,Myotis,Myotis dasycneme,1,alphacoronavirus,NA,NA,repeat,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Mønsted,NA,NA,NA,2016,NA,NA,September,NA,NA,0,1,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,2,2,1,Vespertilionidae,Myotis,Myotis dasycneme,1,genus not specified,NA,NA,repeat,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Mønsted,NA,NA,NA,2016,NA,NA,November,NA,NA,0,1,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,7,0,0,Vespertilionidae,Myotis,Myotis nattereri,1,genus not specified,NA,NA,pooled,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Bornholm,NA,NA,NA,2013,NA,NA,August,NA,September,1,1,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,1,0,0,Vespertilionidae,Myotis,Myotis nattereri,1,genus not specified,NA,NA,single,cross-sectional,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,"Lolland, Agerup forest",NA,NA,NA,2013,NA,NA,September,NA,NA,0,1,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,2,1,0.5,Vespertilionidae,Myotis,Myotis nattereri,1,alphacoronavirus,NA,NA,repeat,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Mønsted,NA,NA,NA,2014,NA,NA,October,NA,NA,0,1,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,1,0,0,Vespertilionidae,Myotis,Myotis nattereri,1,genus not specified,NA,NA,repeat,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Mønsted,NA,NA,NA,2016,NA,NA,September,NA,NA,0,1,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,4,0,0,Vespertilionidae,Myotis,Myotis bechsteinii,1,genus not specified,NA,NA,repeat,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Bornholm,NA,NA,NA,2013,NA,NA,August,NA,NA,1,0,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,1,0,0,Vespertilionidae,Myotis,Myotis bechsteinii,1,genus not specified,NA,NA,repeat,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Bornholm - 1 individual,NA,NA,NA,2015,NA,NA,August,NA,NA,1,0,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,1,0,0,Vespertilionidae,Myotis,Myotis bechsteinii,1,genus not specified,NA,NA,repeat,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Bornholm - 1 from nest box,NA,NA,NA,2015,NA,NA,August,NA,NA,1,0,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,3,0,0,Vespertilionidae,Myotis,Myotis bechsteinii,1,genus not specified,NA,NA,repeat,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Bornholm - 3 from next boxes,NA,NA,NA,2016,NA,NA,August,NA,NA,1,0,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,2,0,0,Vespertilionidae,Myotis,Myotis bechsteinii,1,genus not specified,NA,NA,repeat,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Bornholm,NA,NA,NA,2017,NA,NA,September,NA,NA,0,1,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,1,0,0,Vespertilionidae,Myotis,Myotis mystacinus,1,genus not specified,NA,NA,repeat,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Bornholm,NA,NA,NA,2013,NA,NA,August,NA,NA,1,0,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,1,0,0,Vespertilionidae,Myotis,Myotis mystacinus,1,genus not specified,NA,NA,repeat,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Bornholm,NA,NA,NA,2016,NA,NA,August,NA,NA,1,0,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,2,0,0,Vespertilionidae,Myotis,Myotis brandtii,1,genus not specified,NA,NA,single,cross-sectional,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Bornholm,NA,NA,NA,2013,NA,NA,August,NA,NA,1,0,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,1,0,0,Vespertilionidae,Myotis,Myotis brandtii,1,genus not specified,NA,NA,single,cross-sectional,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Mønsted,NA,NA,NA,2015,NA,NA,April,NA,NA,0,0,0,1,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,2,0,0,Vespertilionidae,Nyctalus,Nyctalus noctula,1,genus not specified,NA,NA,single,cross-sectional,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Bornholm - 2 individual,NA,NA,NA,2013,NA,NA,August,NA,NA,1,0,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,2,0,0,Vespertilionidae,Nyctalus,Nyctalus noctula,1,genus not specified,NA,NA,single,cross-sectional,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Bornholm - 2 from nest boxes,NA,NA,NA,2013,NA,NA,August,NA,NA,1,0,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,6,1,0.166667,Vespertilionidae,Pipistrellus,Pipistrellus pygmaeus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,"Funen, Sollerup forest",NA,NA,NA,2013,NA,NA,August,NA,NA,1,0,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,9,1,0.111111,Vespertilionidae,Pipistrellus,Pipistrellus pygmaeus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Vadum - mix of individual + floor samples from colony,NA,NA,NA,2014,NA,NA,June,NA,NA,1,0,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pygmaeus,1,genus not specified,NA,NA,single,cross-sectional,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Sorø - from nest boxes,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,0,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,8,4,0.5,Vespertilionidae,Pipistrellus,Pipistrellus pygmaeus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,"Borup - 5 individual samples, 3 from floor",NA,NA,NA,2015,NA,NA,September,NA,NA,0,1,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pygmaeus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Helsinge - sample from abandoned colony,NA,NA,NA,2015,NA,NA,September,NA,October,1,1,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,3,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pygmaeus,1,genus not specified,NA,NA,single,cross-sectional,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Tureby - from colony,NA,NA,NA,2016,NA,NA,August,NA,NA,1,0,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,1,0,0,Vespertilionidae,Plecotus,Plecotus auritus,1,genus not specified,NA,NA,single,cross-sectional,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Bornholm,NA,NA,NA,2013,NA,NA,August,NA,NA,1,0,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,1,0,0,Vespertilionidae,Plecotus,Plecotus auritus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Bornholm - from floor,NA,NA,NA,2015,NA,NA,September,NA,October,1,1,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,1,1,1,Vespertilionidae,Eptesicus,Eptesicus serotinus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Tim - 1 individual,NA,NA,NA,2014,NA,NA,June,NA,NA,1,0,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,2,2,1,Vespertilionidae,Eptesicus,Eptesicus serotinus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Tim - 2 from floor,NA,NA,NA,2014,NA,NA,June,NA,NA,1,0,0,0,No
detection and characterization of distinct alphacoronaviruses in five different bat species in denmark,Lazov et al.,Viruses,2018,1,0,0,Vespertilionidae,Eptesicus,Eptesicus serotinus,1,genus not specified,NA,NA,single,cross-sectional,PCR,rtRT-PCR,single,Other,ORF1b,"faecal, rectal, or anal",faeces,Denmark,NA,Sakskøbing - from floor,NA,NA,NA,2017,NA,NA,June,NA,NA,1,0,0,0,No
detection of polyoma and corona viruses in bats of canada,Misra et al.,J Gen Virol,2009,21,1,0.047619,Vespertilionidae,Myotis,Myotis lucifugus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled tissue,tissue,Canada,Manitoba,St. George Cave,NA,NA,NA,2007,September,NA,NA,NA,NA,0,1,0,0,Yes
detection of polyoma and corona viruses in bats of canada,Misra et al.,J Gen Virol,2009,5,1,0.2,Vespertilionidae,Myotis,Myotis lucifugus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled tissue,tissue,Canada,Manitoba,Dale's Cave,NA,NA,NA,2008,May,NA,NA,NA,NA,0,0,0,1,Yes
detection of polyoma and corona viruses in bats of canada,Misra et al.,J Gen Virol,2009,5,1,0.2,Vespertilionidae,Myotis,Myotis lucifugus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled tissue,tissue,Canada,Manitoba,Abyss Cave,NA,NA,NA,2008,May,NA,NA,NA,NA,0,0,0,1,Yes
"detection of severe acute respiratory syndrome-like, middle east respiratory syndrome-like bat coronaviruses and group h rotavirus in faeces of korean bats",Kim et al.,Transbound Emerg Dis,2016,4,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,South Korea,Jeongsun,PG Cave,NA,NA,NA,2015,October,NA,NA,NA,NA,0,1,0,0,No
"detection of severe acute respiratory syndrome-like, middle east respiratory syndrome-like bat coronaviruses and group h rotavirus in faeces of korean bats",Kim et al.,Transbound Emerg Dis,2016,6,1,0.166667,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,South Korea,Inje,BM abandoned mine,NA,NA,NA,2015,October,NA,NA,NA,NA,0,1,0,0,No
"detection of severe acute respiratory syndrome-like, middle east respiratory syndrome-like bat coronaviruses and group h rotavirus in faeces of korean bats",Kim et al.,Transbound Emerg Dis,2016,4,2,0.5,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,South Korea,Munkyung,BGS Cave,NA,NA,NA,2015,December,NA,NA,NA,NA,0,0,1,0,No
"detection of severe acute respiratory syndrome-like, middle east respiratory syndrome-like bat coronaviruses and group h rotavirus in faeces of korean bats",Kim et al.,Transbound Emerg Dis,2016,4,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,South Korea,Yeongwol,YJ Cave,NA,NA,NA,2015,December,NA,NA,NA,NA,0,0,1,0,No
"detection of severe acute respiratory syndrome-like, middle east respiratory syndrome-like bat coronaviruses and group h rotavirus in faeces of korean bats",Kim et al.,Transbound Emerg Dis,2016,4,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,South Korea,Miwon,CS Cave,NA,NA,NA,2015,December,NA,NA,NA,NA,0,0,1,0,No
detection of specific antibodies to the nucleocapsid protein fragments of severe acute respiratory syndrome-coronavirus and scotophilus bat coronavirus-512 in three insectivorous bat species,Chen YiNing et al.,Taiwan Veterinary Journal,2018,21,10,0.47619,Vespertilionidae,Scotophilus,Scotophilus kuhlii,1,alphacoronavirus,NA,Scotophilus bat CoV-512,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,Yunlin,palm at Beigang sugar processing factory trees,NA,NA,2,NA,NA,2014,September,2015,August,1,1,0,0,No
detection of specific antibodies to the nucleocapsid protein fragments of severe acute respiratory syndrome-coronavirus and scotophilus bat coronavirus-512 in three insectivorous bat species,Chen YiNing et al.,Taiwan Veterinary Journal,2018,30,2,0.066667,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,Yilan,irrigation culvert at Dongshan,NA,NA,2,NA,NA,2014,October,2015,September,1,1,0,0,No
detection of specific antibodies to the nucleocapsid protein fragments of severe acute respiratory syndrome-coronavirus and scotophilus bat coronavirus-512 in three insectivorous bat species,Chen YiNing et al.,Taiwan Veterinary Journal,2018,18,0,0,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,Yilan,irrigation culvert at Dongshan,NA,NA,2,NA,NA,2014,October,2015,September,1,1,0,0,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,1,0,0,Hipposideridae,Coelops,Coelops frithii,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,Miaoli,Woods,24.42638889,121.0125,NA,2014,September,NA,NA,NA,NA,0,1,0,0,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,7,1,0.142857,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,"Miaoli, Dongshan",Woods (Miaoli) and irrigation culvert (Dongshan),NA,NA,3,NA,NA,2013,November,2014,October,1,1,1,1,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,50,11,0.22,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,"Miaoli, Dili, Dongshan","Woods (Miaoli), irrigation culvert (Dili), irrigation culvert (Dongshan)",NA,NA,3,NA,NA,2013,November,2014,October,1,1,1,1,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,50,1,0.02,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,betacoronavirus,Sarbecovirus,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,"Miaoli, Dili, Dongshan","Woods (Miaoli), irrigation culvert (Dili), irrigation culvert (Dongshan)",NA,NA,3,NA,NA,2013,November,2014,October,1,1,1,1,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,50,3,0.06,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,alphacoronavirus,NA,Scotophilus bat CoV 512-related lineage,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,"Miaoli, Dili, Dongshan","Woods (Miaoli), irrigation culvert (Dili), irrigation culvert (Dongshan)",NA,NA,3,NA,NA,2013,November,2014,October,1,1,1,1,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,54,4,0.074074,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,"Guihou, Miaoli, Dili, Dongshan","Woods (Guihou), Woods (Miaoli), irrigation culvert (Dili), irrigation culvert (Dongshan)",NA,NA,6,NA,NA,2013,August,2014,October,1,1,1,1,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,54,7,0.12963,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,alphacoronavirus,NA,"Scotophilus bat CoV 512-related lineage, Miniopterus bat CoV1A-related lineage",pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,"Guihou, Miaoli, Dili, Dongshan","Woods (Guihou), Woods (Miaoli), irrigation culvert (Dili), irrigation culvert (Dongshan)",NA,NA,6,NA,NA,2013,August,2014,October,1,1,1,1,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,2,0,0,Vespertilionidae,Barbastella,Barbastella beijingensis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,Miaoli,Woods,24.42638889,121.0125,2,NA,NA,2014,July,2014,August,1,1,1,1,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,1,0,0,Vespertilionidae,Harpiola,Harpiola isodon,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,Miaoli,Woods,24.42638889,121.0125,NA,2014,August,NA,NA,NA,NA,1,0,0,0,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,10,1,0.1,Vespertilionidae,Kerivoula,Kerivoula titania,1,alphacoronavirus,NA,Scotophilus bat CoV 512-related lineage,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,"Dong'ao, Nan'ao, Miaoli",Woods,NA,NA,4,NA,NA,2013,September,2014,October,1,1,1,1,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,2,0,0,Vespertilionidae,Murina,Murina gracilis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,Miaoli,Woods,24.42638889,121.0125,2,NA,NA,2014,September,2014,October,0,1,0,0,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,17,0,0,Vespertilionidae,Murina,Murina puta,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,"Dong'ao, Nan'ao, Miaoli",Woods,NA,NA,5,NA,NA,2014,April,2014,October,1,1,0,1,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,4,1,0.25,Vespertilionidae,Murina,Murina recondita,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,"Nan'ao, Miaoli",Woods,NA,NA,3,NA,NA,2014,April,2014,October,1,1,0,1,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,22,5,0.227273,Vespertilionidae,Myotis,Myotis fimbriatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,"Wulai, Dongshan","Woods (Wulai), irrigation culvert (Dongshan)",NA,NA,2,NA,NA,2014,March,2014,October,1,1,0,1,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,2,0,0,Vespertilionidae,Myotis,Myotis laniger,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,Miaoli,Woods,24.42638889,121.0125,NA,2014,August,NA,NA,NA,NA,1,0,0,0,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,2,0,0,Vespertilionidae,Myotis,Myotis rufoniger,1; not in Upham phylogeny,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,Dong'ao,Woods,24.53194444,121.8313889,NA,2014,August,NA,NA,NA,NA,1,0,0,0,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,9,0,0,Vespertilionidae,Myotis,Myotis secundus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,"Nan'ao, Miaoli",Woods,NA,NA,3,NA,NA,2014,April,2014,July,1,0,0,1,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus abramus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,Jhutang,palm trees in an elementary school,24.42638889,120.3866667,NA,2013,September,NA,NA,NA,NA,0,1,0,0,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,3,0,0,Vespertilionidae,Pipistrellus,Pipistrellus montanus,1; not in Upham phylogeny,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,Miaoli,Woods,24.42638889,121.0125,NA,2014,July,NA,NA,NA,NA,1,0,0,0,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,3,0,0,Vespertilionidae,Pipistrellus,Pipistrellus taiwanesis,1; not in Upham phylogeny,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,Miaoli,Woods,24.42638889,121.0125,2,NA,NA,2014,August,2014,September,1,1,0,0,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,7,1,0.142857,Vespertilionidae,Plecotus,Plecotus taivanus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,Miaoli,Woods,24.42638889,121.0125,2,NA,NA,2014,July,2014,September,1,1,0,0,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,48,10,0.208333,Vespertilionidae,Scotophilus,Scotophilus kuhlii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,"Jhutang, Beigang","palm trees in an elementary school (Jhutang), palm trees in a sugar factory (Beigang)",NA,NA,2,NA,NA,2013,September,2014,September,1,1,1,1,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,48,11,0.229167,Vespertilionidae,Scotophilus,Scotophilus kuhlii,1,alphacoronavirus,NA,Scotophilus bat CoV 512-related lineage,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,"Jhutang, Beigang","palm trees in an elementary school (Jhutang), palm trees in a sugar factory (Beigang)",NA,NA,2,NA,NA,2013,September,2014,September,1,1,1,1,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,3,1,0.333333,Vespertilionidae,Submyotodon,Submyotodon latirostris,1,alphacoronavirus,NA,Miniopterus bat CoV1A-related lineage,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,"Nan'ao, Miaoli",Woods,NA,NA,3,NA,NA,2014,June,2014,October,1,1,0,0,No
detection of the severe acute respiratory syndrome-related coronavirus and alphacoronavirus in the bat population of taiwan,Chen et al.,Zoonoses Public Health,2016,30,3,0.1,Vespertilionidae,Myotis,Myotis formosus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,Shuilin,Ficus trees in an elementary school,23.62055556,120.2611111,NA,NA,June,2014,NA,NA,NA,1,0,0,0,No
discovery and genetic analysis of novel coronaviruses in least horseshoe bats in southwestern china,Wang et al.,Emerg Microbes Infect,2017,10,0,0,Rhinolophidae,Rhinolophus,Rhinolophus luctus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,China,Yunnan,Tengchong,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,No
discovery and genetic analysis of novel coronaviruses in least horseshoe bats in southwestern china,Wang et al.,Emerg Microbes Infect,2017,10,0,0,Rhinolophidae,Rhinolophus,Rhinolophus luctus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,Tengchong,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,No
discovery and genetic analysis of novel coronaviruses in least horseshoe bats in southwestern china,Wang et al.,Emerg Microbes Infect,2017,10,0,0,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,China,Yunnan,Tengchong,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,No
discovery and genetic analysis of novel coronaviruses in least horseshoe bats in southwestern china,Wang et al.,Emerg Microbes Infect,2017,10,0,0,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,Tengchong,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,No
discovery and genetic analysis of novel coronaviruses in least horseshoe bats in southwestern china,Wang et al.,Emerg Microbes Infect,2017,10,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,China,Yunnan,Tengchong,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,No
discovery and genetic analysis of novel coronaviruses in least horseshoe bats in southwestern china,Wang et al.,Emerg Microbes Infect,2017,10,4,0.4,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,Tengchong,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,No
discovery and genetic analysis of novel coronaviruses in least horseshoe bats in southwestern china,Wang et al.,Emerg Microbes Infect,2017,10,1,0.1,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,Tengchong,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,No
discovery and genetic analysis of novel coronaviruses in least horseshoe bats in southwestern china,Wang et al.,Emerg Microbes Infect,2017,10,0,0,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,China,Yunnan,Mangshi,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,No
discovery and genetic analysis of novel coronaviruses in least horseshoe bats in southwestern china,Wang et al.,Emerg Microbes Infect,2017,10,0,0,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,Mangshi,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,No
discovery and genetic analysis of novel coronaviruses in least horseshoe bats in southwestern china,Wang et al.,Emerg Microbes Infect,2017,10,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,China,Yunnan,Mangshi,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,No
discovery and genetic analysis of novel coronaviruses in least horseshoe bats in southwestern china,Wang et al.,Emerg Microbes Infect,2017,10,1,0.1,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,Mangshi,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,No
discovery and genetic analysis of novel coronaviruses in least horseshoe bats in southwestern china,Wang et al.,Emerg Microbes Infect,2017,10,1,0.1,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,Mangshi,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,No
discovery and genetic analysis of novel coronaviruses in least horseshoe bats in southwestern china,Wang et al.,Emerg Microbes Infect,2017,10,0,0,Vespertilionidae,Myotis,Myotis daubentonii,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,China,Yunnan,Mangshi,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,No
discovery and genetic analysis of novel coronaviruses in least horseshoe bats in southwestern china,Wang et al.,Emerg Microbes Infect,2017,10,0,0,Vespertilionidae,Myotis,Myotis daubentonii,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,Mangshi,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,No
discovery and genetic analysis of novel coronaviruses in least horseshoe bats in southwestern china,Wang et al.,Emerg Microbes Infect,2017,6,0,0,Pteropodidae,NA,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,China,Yunnan,Wanding,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,No
discovery and genetic analysis of novel coronaviruses in least horseshoe bats in southwestern china,Wang et al.,Emerg Microbes Infect,2017,6,0,0,Pteropodidae,NA,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,Wanding,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,No
discovery of a rich gene pool of bat sars-related coronaviruses provides new insights into the origin of sars coronavirus,Hu et al.,Plos Pathog,2017,14,1,0.071429,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,Sarbecovirus,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Yunnan,Kunning city cave,NA,NA,8,2011,April,2011,April,2015,October,0,0,0,1,No
discovery of a rich gene pool of bat sars-related coronaviruses provides new insights into the origin of sars coronavirus,Hu et al.,Plos Pathog,2017,8,3,0.375,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,Sarbecovirus,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Yunnan,Kunning city cave,NA,NA,8,2011,October,2011,April,2015,October,0,1,0,0,No
discovery of a rich gene pool of bat sars-related coronaviruses provides new insights into the origin of sars coronavirus,Hu et al.,Plos Pathog,2017,54,4,0.074074,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,Sarbecovirus,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,Yunnan,Kunning city cave,NA,NA,8,2012,May,2011,April,2015,October,0,0,0,1,No
discovery of a rich gene pool of bat sars-related coronaviruses provides new insights into the origin of sars coronavirus,Hu et al.,Plos Pathog,2017,39,16,0.410256,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,Sarbecovirus,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,Kunning city cave,NA,NA,8,2012,September,2011,April,2015,October,0,1,0,0,No
discovery of a rich gene pool of bat sars-related coronaviruses provides new insights into the origin of sars coronavirus,Hu et al.,Plos Pathog,2017,39,3,0.076923,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,betacoronavirus,Sarbecovirus,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,Kunning city cave,NA,NA,8,2012,September,2011,April,2015,October,0,1,0,0,No
discovery of a rich gene pool of bat sars-related coronaviruses provides new insights into the origin of sars coronavirus,Hu et al.,Plos Pathog,2017,52,16,0.307692,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,Sarbecovirus,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,Kunning city cave,NA,NA,8,2013,April,2011,April,2015,October,0,0,0,1,No
discovery of a rich gene pool of bat sars-related coronaviruses provides new insights into the origin of sars coronavirus,Hu et al.,Plos Pathog,2017,115,8,0.069565,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,Sarbecovirus,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,Yunnan,Kunning city cave,NA,NA,8,2013,July,2011,April,2015,October,1,0,0,0,No
discovery of a rich gene pool of bat sars-related coronaviruses provides new insights into the origin of sars coronavirus,Hu et al.,Plos Pathog,2017,131,3,0.022901,Hipposideridae,Aselliscus stoliczkanus,Asellicus stoliczkamus,1,betacoronavirus,Sarbecovirus,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,Kunning city cave,NA,NA,8,2014,May,2011,April,2015,October,0,0,0,1,No
discovery of a rich gene pool of bat sars-related coronaviruses provides new insights into the origin of sars coronavirus,Hu et al.,Plos Pathog,2017,131,1,0.007634,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,betacoronavirus,Sarbecovirus,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,Kunning city cave,NA,NA,8,2014,May,2011,April,2015,October,0,0,0,1,No
discovery of a rich gene pool of bat sars-related coronaviruses provides new insights into the origin of sars coronavirus,Hu et al.,Plos Pathog,2017,19,4,0.210526,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,Sarbecovirus,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Yunnan,Kunning city cave,NA,NA,8,2014,October,2011,April,2015,October,0,1,0,0,No
discovery of a rich gene pool of bat sars-related coronaviruses provides new insights into the origin of sars coronavirus,Hu et al.,Plos Pathog,2017,25,5,0.2,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,Sarbecovirus,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Yunnan,Kunning city cave,NA,NA,8,2015,October,2011,April,2015,October,0,1,0,0,No
"distant relatives of severe acute respiratory syndrome coronavirus and close relatives of human coronavirus 229e in bats, ghana",Pfefferle et al.,Emerg Infect Dis,2009,212,0,0,Pteropodidae,Eidolon,Eidolon helvum,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,Kumasi,Zoo Kumasi,6.700555556,-1.624972222,NA,2008,February,NA,NA,NA,NA,0,0,1,0,No
"distant relatives of severe acute respiratory syndrome coronavirus and close relatives of human coronavirus 229e in bats, ghana",Pfefferle et al.,Emerg Infect Dis,2009,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus nanulus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,Kumasi,KNUST Botanical Garden Kumasi,6.685111111,-1.561888889,NA,2008,February,NA,NA,NA,NA,0,0,1,0,No
"distant relatives of severe acute respiratory syndrome coronavirus and close relatives of human coronavirus 229e in bats, ghana",Pfefferle et al.,Emerg Infect Dis,2009,1,0,0,Vespertilionidae,Glauconycteris,Glauconycteris beatrix,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,Kumasi,KNUST Botanical Garden Kumasi,6.685111111,-1.561888889,NA,2008,February,NA,NA,NA,NA,0,0,1,0,No
"distant relatives of severe acute respiratory syndrome coronavirus and close relatives of human coronavirus 229e in bats, ghana",Pfefferle et al.,Emerg Infect Dis,2009,6,0,0,Molossidae,Chaerephon,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,Bosumtwi,Lake Bosumtwi,6.539527778,-1.411527778,NA,2008,February,NA,NA,NA,NA,0,0,1,0,No
"distant relatives of severe acute respiratory syndrome coronavirus and close relatives of human coronavirus 229e in bats, ghana",Pfefferle et al.,Emerg Infect Dis,2009,1,0,0,Nycteridae,Nycteris,Nycteris hispida,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,Bosumtwi,Lake Bosumtwi,6.539527778,-1.411527778,NA,2008,February,NA,NA,NA,NA,0,0,1,0,No
"distant relatives of severe acute respiratory syndrome coronavirus and close relatives of human coronavirus 229e in bats, ghana",Pfefferle et al.,Emerg Infect Dis,2009,5,0,0,Vespertilionidae,Neoromicia,Neoromicia nana,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,Bosumtwi,Lake Bosumtwi,6.539527778,-1.411527778,NA,2008,February,NA,NA,NA,NA,0,0,1,0,No
"distant relatives of severe acute respiratory syndrome coronavirus and close relatives of human coronavirus 229e in bats, ghana",Pfefferle et al.,Emerg Infect Dis,2009,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus deserti,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,Bosumtwi,Lake Bosumtwi,6.539527778,-1.411527778,NA,2008,February,NA,NA,NA,NA,0,0,1,0,No
"distant relatives of severe acute respiratory syndrome coronavirus and close relatives of human coronavirus 229e in bats, ghana",Pfefferle et al.,Emerg Infect Dis,2009,40,4,0.1,Hipposideridae,Hipposideros,Hipposideros ruber,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,Kwamang,Cave Kwamang,6.966666667,-1.266666667,NA,2008,February,NA,NA,NA,NA,0,0,1,0,No
"distant relatives of severe acute respiratory syndrome coronavirus and close relatives of human coronavirus 229e in bats, ghana",Pfefferle et al.,Emerg Infect Dis,2009,40,6,0.15,Hipposideridae,Hipposideros,Hipposideros ruber,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,Kwamang,Cave Kwamang,6.966666667,-1.266666667,NA,2008,February,NA,NA,NA,NA,0,0,1,0,No
"distant relatives of severe acute respiratory syndrome coronavirus and close relatives of human coronavirus 229e in bats, ghana",Pfefferle et al.,Emerg Infect Dis,2009,13,0,0,Hipposideridae,Hipposideros,Hipposideros abae,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,Kwamang,Cave Kwamang,6.966666667,-1.266666667,NA,2008,February,NA,NA,NA,NA,0,0,1,0,No
"distant relatives of severe acute respiratory syndrome coronavirus and close relatives of human coronavirus 229e in bats, ghana",Pfefferle et al.,Emerg Infect Dis,2009,8,0,0,Hipposideridae,Hipposideros,Hipposideros ruber,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,"Booyem, Brong-Ahafo",Cave Booyem A,7.723583333,-1.987916667,NA,2008,February,NA,NA,NA,NA,0,0,1,0,No
"distant relatives of severe acute respiratory syndrome coronavirus and close relatives of human coronavirus 229e in bats, ghana",Pfefferle et al.,Emerg Infect Dis,2009,12,0,0,Emballonuridae,Coleura,Coleura afra,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,"Booyem, Brong-Ahafo",Cave Booyem A,7.723583333,-1.987916667,NA,2008,February,NA,NA,NA,NA,0,0,1,0,No
"distant relatives of severe acute respiratory syndrome coronavirus and close relatives of human coronavirus 229e in bats, ghana",Pfefferle et al.,Emerg Infect Dis,2009,11,1,0.090909,Hipposideridae,Hipposideros,Hipposideros ruber,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,"Booyem, Brong-Ahafo",Cave Booyem B,7.723805556,-1.992638889,NA,2008,February,NA,NA,NA,NA,0,0,1,0,No
"distant relatives of severe acute respiratory syndrome coronavirus and close relatives of human coronavirus 229e in bats, ghana",Pfefferle et al.,Emerg Infect Dis,2009,11,1,0.090909,Hipposideridae,Hipposideros,Hipposideros ruber,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,"Booyem, Brong-Ahafo",Cave Booyem B,7.723805556,-1.992638889,NA,2008,February,NA,NA,NA,NA,0,0,1,0,No
"distant relatives of severe acute respiratory syndrome coronavirus and close relatives of human coronavirus 229e in bats, ghana",Pfefferle et al.,Emerg Infect Dis,2009,3,0,0,Hipposideridae,Hipposideros,Hipposideros abae,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,"Booyem, Brong-Ahafo",Cave Booyem B,7.723805556,-1.992638889,NA,2008,February,NA,NA,NA,NA,0,0,1,0,No
"distant relatives of severe acute respiratory syndrome coronavirus and close relatives of human coronavirus 229e in bats, ghana",Pfefferle et al.,Emerg Infect Dis,2009,21,0,0,Emballonuridae,Coleura,Coleura afra,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,"Booyem, Brong-Ahafo",Cave Booyem B,7.723805556,-1.992638889,NA,2008,February,NA,NA,NA,NA,0,0,1,0,No
identification of a lineage d betacoronavirus in cave nectar bats (eonycteris spelaea) in singapore and an overview of lineage d reservoir ecology in se asian bats,Mendenhall et al.,Transbound Emerg Dis,2017,1124,0,0,Pteropodidae,Eonycteris,Eonycteris spelaea,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Singapore,NA,single colony,NA,NA,NA,NA,NA,2011,April,2015,June,1,1,1,1,No
identification of a lineage d betacoronavirus in cave nectar bats (eonycteris spelaea) in singapore and an overview of lineage d reservoir ecology in se asian bats,Mendenhall et al.,Transbound Emerg Dis,2017,169,0,0,Pteropodidae,Eonycteris,Eonycteris spelaea,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Singapore,NA,pool of 9 sites in Singapore,NA,NA,NA,NA,NA,2011,April,2014,March,1,1,1,1,No
identification of a lineage d betacoronavirus in cave nectar bats (eonycteris spelaea) in singapore and an overview of lineage d reservoir ecology in se asian bats,Mendenhall et al.,Transbound Emerg Dis,2017,144,0,0,Pteropodidae,Cynopterus,Cynopterus brachyotis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Singapore,NA,pool of 9 sites in Singapore,NA,NA,NA,NA,NA,2011,April,2014,March,1,1,1,1,No
identification of a lineage d betacoronavirus in cave nectar bats (eonycteris spelaea) in singapore and an overview of lineage d reservoir ecology in se asian bats,Mendenhall et al.,Transbound Emerg Dis,2017,79,0,0,Pteropodidae,Penthetor,Penthetor lucasi,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Singapore,NA,pool of 9 sites in Singapore,NA,NA,NA,NA,NA,2011,April,2014,March,1,1,1,1,No
identification of a lineage d betacoronavirus in cave nectar bats (eonycteris spelaea) in singapore and an overview of lineage d reservoir ecology in se asian bats,Mendenhall et al.,Transbound Emerg Dis,2017,2,0,0,Pteropodidae,Macroglossus,Macroglossus minimus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Singapore,NA,pool of 9 sites in Singapore,NA,NA,NA,NA,NA,2011,April,2014,March,1,1,1,1,No
identification of a lineage d betacoronavirus in cave nectar bats (eonycteris spelaea) in singapore and an overview of lineage d reservoir ecology in se asian bats,Mendenhall et al.,Transbound Emerg Dis,2017,36,0,0,Rhinolophidae,Rhinolophus,Rhinolophus lepidus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Singapore,NA,pool of 9 sites in Singapore,NA,NA,NA,NA,NA,2011,April,2014,March,1,1,1,1,No
identification of a lineage d betacoronavirus in cave nectar bats (eonycteris spelaea) in singapore and an overview of lineage d reservoir ecology in se asian bats,Mendenhall et al.,Transbound Emerg Dis,2017,1,0,0,Vespertilionidae,Myotis,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Singapore,NA,pool of 9 sites in Singapore,NA,NA,NA,NA,NA,2011,April,2014,March,1,1,1,1,No
identification of a novel coronavirus in bats,Poon et al.,Journal of Virology,2005,15,0,0,Pteropodidae,Cynopterus,Cynopterus sphinx,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,Hong Kong,three different geographic locations,NA,NA,NA,NA,NA,2003,NA,2004,NA,1,0,0,0,No
identification of a novel coronavirus in bats,Poon et al.,Journal of Virology,2005,15,0,0,Pteropodidae,Cynopterus,Cynopterus sphinx,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Hong Kong,three different geographic locations,NA,NA,NA,NA,NA,2003,NA,2004,NA,1,0,0,0,No
identification of a novel coronavirus in bats,Poon et al.,Journal of Virology,2005,4,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,Hong Kong,three different geographic locations,NA,NA,NA,NA,NA,2003,NA,2004,NA,1,0,0,0,No
identification of a novel coronavirus in bats,Poon et al.,Journal of Virology,2005,4,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Hong Kong,three different geographic locations,NA,NA,NA,NA,NA,2003,NA,2004,NA,1,0,0,0,No
identification of a novel coronavirus in bats,Poon et al.,Journal of Virology,2005,3,0,0,Hipposideridae,Hipposideros,Hipposideros pomona,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,Hong Kong,three different geographic locations,NA,NA,NA,NA,NA,2003,NA,2004,NA,1,0,0,0,No
identification of a novel coronavirus in bats,Poon et al.,Journal of Virology,2005,3,0,0,Hipposideridae,Hipposideros,Hipposideros pomona,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Hong Kong,three different geographic locations,NA,NA,NA,NA,NA,2003,NA,2004,NA,1,0,0,0,No
identification of a novel coronavirus in bats,Poon et al.,Journal of Virology,2005,16,1,0.0625,Miniopteridae,Miniopterus,Miniopterus magnater,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,Hong Kong,three different geographic locations,NA,NA,NA,NA,NA,2003,NA,2004,NA,1,0,0,0,No
identification of a novel coronavirus in bats,Poon et al.,Journal of Virology,2005,16,2,0.125,Miniopteridae,Miniopterus,Miniopterus magnater,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Hong Kong,three different geographic locations,NA,NA,NA,NA,NA,2003,NA,2004,NA,1,0,0,0,No
identification of a novel coronavirus in bats,Poon et al.,Journal of Virology,2005,19,5,0.263158,Miniopteridae,Miniopterus,Miniopterus pusillus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,Hong Kong,three different geographic locations,NA,NA,NA,NA,NA,2003,NA,2004,NA,1,0,0,0,No
identification of a novel coronavirus in bats,Poon et al.,Journal of Virology,2005,19,12,0.631579,Miniopteridae,Miniopterus,Miniopterus pusillus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Hong Kong,three different geographic locations,NA,NA,NA,NA,NA,2003,NA,2004,NA,1,0,0,0,No
identification of a novel coronavirus in bats,Poon et al.,Journal of Virology,2005,4,1,0.25,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,Hong Kong,three different geographic locations,NA,NA,NA,NA,NA,2003,NA,2004,NA,1,0,0,0,No
identification of a novel coronavirus in bats,Poon et al.,Journal of Virology,2005,4,1,0.25,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Hong Kong,three different geographic locations,NA,NA,NA,NA,NA,2003,NA,2004,NA,1,0,0,0,No
identification of a novel coronavirus in bats,Poon et al.,Journal of Virology,2005,3,0,0,Vespertilionidae,Myotis,Myotis myotis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,Hong Kong,three different geographic locations,NA,NA,NA,NA,NA,2003,NA,2004,NA,1,0,0,0,No
identification of a novel coronavirus in bats,Poon et al.,Journal of Virology,2005,3,0,0,Vespertilionidae,Myotis,Myotis myotis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Hong Kong,three different geographic locations,NA,NA,NA,NA,NA,2003,NA,2004,NA,1,0,0,0,No
identification of a novel coronavirus in bats,Poon et al.,Journal of Virology,2005,5,0,0,Vespertilionidae,Myotis,Myotis pilosus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,Hong Kong,three different geographic locations,NA,NA,NA,NA,NA,2003,NA,2004,NA,1,0,0,0,No
identification of a novel coronavirus in bats,Poon et al.,Journal of Virology,2005,5,0,0,Vespertilionidae,Myotis,Myotis pilosus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Hong Kong,three different geographic locations,NA,NA,NA,NA,NA,2003,NA,2004,NA,1,0,0,0,No
identification of a novel coronavirus in bats,Poon et al.,Journal of Virology,2005,3,0,0,Vespertilionidae,Pipistrellus,Pipistrellus abramus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,Hong Kong,three different geographic locations,NA,NA,NA,NA,NA,2003,NA,2004,NA,1,0,0,0,No
identification of a novel coronavirus in bats,Poon et al.,Journal of Virology,2005,3,0,0,Vespertilionidae,Pipistrellus,Pipistrellus abramus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Hong Kong,three different geographic locations,NA,NA,NA,NA,NA,2003,NA,2004,NA,1,0,0,0,No
identification of a novel coronavirus in bats,Poon et al.,Journal of Virology,2005,2,0,0,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,Hong Kong,three different geographic locations,NA,NA,NA,NA,NA,2003,NA,2004,NA,1,0,0,0,No
identification of a novel coronavirus in bats,Poon et al.,Journal of Virology,2005,2,0,0,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Hong Kong,three different geographic lcoations,NA,NA,NA,NA,NA,2003,NA,2004,NA,1,0,0,0,No
identification of a novel coronavirus in bats,Poon et al.,Journal of Virology,2005,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,Hong Kong,three different geographic lcoations,NA,NA,NA,NA,NA,2003,NA,2004,NA,1,0,0,0,No
identification of a novel coronavirus in bats,Poon et al.,Journal of Virology,2005,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Hong Kong,three different geographic lcoations,NA,NA,NA,NA,NA,2003,NA,2004,NA,1,0,0,0,No
identification of a novel coronavirus in bats,Poon et al.,Journal of Virology,2005,6,0,0,Rhinolophidae,Rhinolophus,Rhinolophus rouxii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,Hong Kong,three different geographic lcoations,NA,NA,NA,NA,NA,2003,NA,2004,NA,1,0,0,0,No
identification of a novel coronavirus in bats,Poon et al.,Journal of Virology,2005,6,0,0,Rhinolophidae,Rhinolophus,Rhinolophus rouxii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Hong Kong,three different geographic lcoations,NA,NA,NA,NA,NA,2003,NA,2004,NA,1,0,0,0,No
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,4,0,0,Rhinolophidae,Rhinolophus,Rhinolophus hipposideros,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,2,0,0,Rhinolophidae,Rhinolophus,Rhinolophus hipposideros,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,2,0,0,Rhinolophidae,Rhinolophus,Rhinolophus hipposideros,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,3,0,0,Rhinolophidae,Rhinolophus,Rhinolophus euryale,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,1,0,0,Vespertilionidae,Barbastella,Barbastella barbastellus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,3,0,0,Vespertilionidae,Barbastella,Barbastella barbastellus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,1,0,0,Vespertilionidae,Myotis,Myotis myotis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,1,0,0,Vespertilionidae,Myotis,Myotis blythii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,1,0,0,Vespertilionidae,Myotis,Myotis mystacinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,4,0,0,Vespertilionidae,Myotis,Myotis mystacinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,1,0,0,Vespertilionidae,Myotis,Myotis emarginatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments (positive in East of France),NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,11,2,0.181818,Vespertilionidae,Myotis,Myotis emarginatus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments (positive in East of France),NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,1,0,0,Vespertilionidae,Myotis,Myotis emarginatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments (positive in East of France),NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,3,0,0,Vespertilionidae,Myotis,Myotis bechsteinii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,1,0,0,Vespertilionidae,Myotis,Myotis daubentonii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,1,0,0,Vespertilionidae,Myotis,Myotis daubentonii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,1,1,1,Vespertilionidae,Myotis,Myotis nattereri,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments (positive in North of France),NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,1,0,0,Vespertilionidae,Myotis,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,2,0,0,Vespertilionidae,Nyctalus,Nyctalus noctula,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,2,0,0,Vespertilionidae,Nyctalus,Nyctalus leisleri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,9,0,0,Vespertilionidae,Nyctalus,Nyctalus leisleri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,4,0,0,Vespertilionidae,Nyctalus,Nyctalus leisleri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,4,0,0,Vespertilionidae,Plecotus,Plecotus austriacus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,4,0,0,Vespertilionidae,Plecotus,Plecotus austriacus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,2,0,0,Vespertilionidae,Plecotus,Plecotus austriacus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,3,0,0,Vespertilionidae,Plecotus,Plecotus auritus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,4,0,0,Vespertilionidae,Plecotus,Plecotus auritus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,8,0,0,Vespertilionidae,Plecotus,Plecotus auritus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,42,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,127,4,0.031496,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,78,1,0.012821,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,9,0,0,Vespertilionidae,Pipistrellus,Pipistrellus kuhlii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,"74 of the 100 French administrative departments (positive in East, West and North of France)",NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,20,0,0,Vespertilionidae,Pipistrellus,Pipistrellus kuhlii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,"74 of the 100 French administrative departments (positive in East, West and North of France)",NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,11,0,0,Vespertilionidae,Pipistrellus,Pipistrellus kuhlii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,"74 of the 100 French administrative departments (positive in East, West and North of France)",NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,2,0,0,Vespertilionidae,Pipistrellus,Pipistrellus nathusii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,20,0,0,Vespertilionidae,Pipistrellus,Pipistrellus nathusii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,5,0,0,Vespertilionidae,Pipistrellus,Pipistrellus nathusii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,17,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pygmaeus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,3,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pygmaeus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,3,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pygmaeus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,11,0,0,Vespertilionidae,Pipistrellus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,"74 of the 100 French administrative departments (positive in East, West and North of France)",NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,20,2,0.1,Vespertilionidae,Pipistrellus,NA,NA,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,"74 of the 100 French administrative departments (positive in East, West and North of France)",NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,7,0,0,Vespertilionidae,Pipistrellus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,"74 of the 100 French administrative departments (positive in East, West and North of France)",NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,1,0,0,Vespertilionidae,Vespertilio,Vespertilio murinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,1,0,0,Vespertilionidae,Vespertilio,Vespertilio murinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,7,0,0,Vespertilionidae,Eptesicus,Eptesicus serotinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,11,0,0,Vespertilionidae,Eptesicus,Eptesicus serotinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,8,0,0,Vespertilionidae,Eptesicus,Eptesicus serotinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,1,0,0,Vespertilionidae,Eptesicus,Eptesicus nilssonii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,1,1,1,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments (2 areas in the South and East of France),NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
"identification of alpha and beta coronavirus in wildlife species in france: bats, rodents, rabbits, and hedgehogs",Monchatre-leroy et al.,Viruses-basel,2017,4,1,0.25,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,France,NA,74 of the 100 French administrative departments (2 areas in the South and East of France),NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
identification of diverse alphacoronaviruses and genomic characterization of a novel severe acute respiratory syndrome-like coronavirus from bats in china,He et al.,J Virol,2014,15,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Yunnan,Xiangyun,NA,NA,NA,2011,NA,NA,NA,NA,NA,1,1,1,1,No
identification of diverse alphacoronaviruses and genomic characterization of a novel severe acute respiratory syndrome-like coronavirus from bats in china,He et al.,J Virol,2014,32,2,0.0625,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,alphacoronavirus,NA,hipposideros bat coronavirus,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Yunnan,Bingchuan,NA,NA,NA,2011,NA,NA,NA,NA,NA,1,1,1,1,No
identification of diverse alphacoronaviruses and genomic characterization of a novel severe acute respiratory syndrome-like coronavirus from bats in china,He et al.,J Virol,2014,30,1,0.033333,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,alphacoronavirus,NA,hipposideros bat coronavirus,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Yunnan,Jinghong,NA,NA,NA,2011,NA,NA,NA,NA,NA,1,1,1,1,No
identification of diverse alphacoronaviruses and genomic characterization of a novel severe acute respiratory syndrome-like coronavirus from bats in china,He et al.,J Virol,2014,11,2,0.181818,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Yunnan,Baoshan,NA,NA,NA,2011,NA,NA,NA,NA,NA,1,1,1,1,No
identification of diverse alphacoronaviruses and genomic characterization of a novel severe acute respiratory syndrome-like coronavirus from bats in china,He et al.,J Virol,2014,4,0,0,Rhinolophidae,Rhinolophus,Rhinolophus hipposideros,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Yunnan,Bingchuan,NA,NA,NA,2011,NA,NA,NA,NA,NA,1,1,1,1,No
identification of diverse alphacoronaviruses and genomic characterization of a novel severe acute respiratory syndrome-like coronavirus from bats in china,He et al.,J Virol,2014,4,1,0.25,Rhinolophidae,Rhinolophus,Rhinolophus hipposideros,1,alphacoronavirus,NA,hipposideros bat coronavirus,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Yunnan,Jinghong,NA,NA,NA,2011,NA,NA,NA,NA,NA,1,1,1,1,No
identification of diverse alphacoronaviruses and genomic characterization of a novel severe acute respiratory syndrome-like coronavirus from bats in china,He et al.,J Virol,2014,3,0,0,Rhinolophidae,Rhinolophus,Rhinolophus hipposideros,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Yunnan,Baoshan,NA,NA,NA,2011,NA,NA,NA,NA,NA,1,1,1,1,No
identification of diverse alphacoronaviruses and genomic characterization of a novel severe acute respiratory syndrome-like coronavirus from bats in china,He et al.,J Virol,2014,83,11,0.13253,Vespertilionidae,Myotis,Myotis davidii,1,alphacoronavirus,NA,"myotis 5/miniopterus 1/myotis HKU6-like, myotis 4",single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Yunnan,Xiangyun,NA,NA,NA,2011,NA,NA,NA,NA,NA,1,1,1,1,No
identification of diverse alphacoronaviruses and genomic characterization of a novel severe acute respiratory syndrome-like coronavirus from bats in china,He et al.,J Virol,2014,22,2,0.090909,Vespertilionidae,Myotis,Myotis daubentonii,1,alphacoronavirus,NA,myotis 5/myotis 4,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Yunnan,Xiangyun,NA,NA,NA,2011,NA,NA,NA,NA,NA,1,1,1,1,No
identification of diverse alphacoronaviruses and genomic characterization of a novel severe acute respiratory syndrome-like coronavirus from bats in china,He et al.,J Virol,2014,64,5,0.078125,Vespertilionidae,Myotis,Myotis daubentonii,1,alphacoronavirus,NA,myotis 5/myotis HKU-6 like/myotis 4,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Yunnan,Bingchuan,NA,NA,NA,2011,NA,NA,NA,NA,NA,1,1,1,1,No
identification of sars-like coronaviruses in horseshoe bats (rhinolophus hipposideros) in slovenia,Rihtaric et al.,Arch Virol,2010,36,14,0.388889,Rhinolophidae,Rhinolophus,Rhinolophus hipposideros,1,betacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Slovenia,NA,27 different locations in Slovenia,NA,NA,NA,2008,NA,NA,May,NA,October,1,1,0,1,No
identification of sars-like coronaviruses in horseshoe bats (rhinolophus hipposideros) in slovenia,Rihtaric et al.,Arch Virol,2010,26,0,0,Vespertilionidae,Myotis,Myotis daubentonii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Slovenia,NA,27 different locations in Slovenia,NA,NA,NA,2008,NA,NA,May,NA,October,1,1,0,1,No
identification of sars-like coronaviruses in horseshoe bats (rhinolophus hipposideros) in slovenia,Rihtaric et al.,Arch Virol,2010,4,0,0,Vespertilionidae,Myotis,Myotis mystacinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Slovenia,NA,27 different locations in Slovenia,NA,NA,NA,2008,NA,NA,May,NA,October,1,1,0,1,No
identification of sars-like coronaviruses in horseshoe bats (rhinolophus hipposideros) in slovenia,Rihtaric et al.,Arch Virol,2010,31,0,0,Vespertilionidae,Myotis,Myotis myotis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Slovenia,NA,27 different locations in Slovenia,NA,NA,NA,2008,NA,NA,May,NA,October,1,1,0,1,No
identification of sars-like coronaviruses in horseshoe bats (rhinolophus hipposideros) in slovenia,Rihtaric et al.,Arch Virol,2010,3,0,0,Vespertilionidae,Pipistrellus,Pipistrellus kuhlii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Slovenia,NA,27 different locations in Slovenia,NA,NA,NA,2008,NA,NA,May,NA,October,1,1,0,1,No
identification of sars-like coronaviruses in horseshoe bats (rhinolophus hipposideros) in slovenia,Rihtaric et al.,Arch Virol,2010,2,0,0,Vespertilionidae,Pipistrellus,Pipistrellus nathusii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Slovenia,NA,27 different locations in Slovenia,NA,NA,NA,2008,NA,NA,May,NA,October,1,1,0,1,No
identification of sars-like coronaviruses in horseshoe bats (rhinolophus hipposideros) in slovenia,Rihtaric et al.,Arch Virol,2010,4,0,0,Vespertilionidae,Eptesicus,Eptesicus serotinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Slovenia,NA,27 different locations in Slovenia,NA,NA,NA,2008,NA,NA,May,NA,October,1,1,0,1,No
insectivorous bats carry host specific astroviruses and coronaviruses across different regions in germany,Fischer et al.,Infect Genet Evol,2016,321,1,0.003115,Vespertilionidae,Myotis,Myotis bechsteinii,1,alphacoronavirus,NA,NA,pooled,longitudinal,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Germany,Bavaria,NA,NA,NA,NA,NA,NA,2011,May,2014,May,1,1,1,1,No
insectivorous bats carry host specific astroviruses and coronaviruses across different regions in germany,Fischer et al.,Infect Genet Evol,2016,152,0,0,Vespertilionidae,Myotis,Myotis nattereri,1,genus not specified,NA,NA,pooled,longitudinal,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Germany,Bavaria,NA,NA,NA,NA,NA,NA,2011,May,2014,May,1,1,1,1,No
insectivorous bats carry host specific astroviruses and coronaviruses across different regions in germany,Fischer et al.,Infect Genet Evol,2016,118,0,0,Vespertilionidae,Plecotus,Plecotus auritus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Germany,Bavaria,NA,NA,NA,NA,NA,NA,2011,May,2014,May,1,1,1,1,No
insectivorous bats carry host specific astroviruses and coronaviruses across different regions in germany,Fischer et al.,Infect Genet Evol,2016,13,0,0,Vespertilionidae,Myotis,Myotis daubentonii,1,genus not specified,NA,NA,pooled,longitudinal,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Germany,Mecklenburg Western Pomerania,NA,NA,NA,NA,NA,NA,2012,July,2013,July,1,1,1,1,No
insectivorous bats carry host specific astroviruses and coronaviruses across different regions in germany,Fischer et al.,Infect Genet Evol,2016,22,0,0,Vespertilionidae,Myotis,Myotis nattereri,1,genus not specified,NA,NA,pooled,longitudinal,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Germany,Mecklenburg Western Pomerania,NA,NA,NA,NA,NA,NA,2012,July,2013,July,1,1,1,1,No
insectivorous bats carry host specific astroviruses and coronaviruses across different regions in germany,Fischer et al.,Infect Genet Evol,2016,22,2,0.090909,Vespertilionidae,Pipistrellus,Pipistrellus nathusii,1,alphacoronavirus,NA,NA,pooled,longitudinal,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Germany,Mecklenburg Western Pomerania,NA,NA,NA,NA,NA,NA,2012,July,2013,July,1,1,1,1,No
insectivorous bats carry host specific astroviruses and coronaviruses across different regions in germany,Fischer et al.,Infect Genet Evol,2016,7,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Germany,Mecklenburg Western Pomerania,NA,NA,NA,NA,NA,NA,2012,July,2013,July,1,1,1,1,No
insectivorous bats carry host specific astroviruses and coronaviruses across different regions in germany,Fischer et al.,Infect Genet Evol,2016,12,2,0.166667,Vespertilionidae,Pipistrellus,Pipistrellus pygmaeus,1,alphacoronavirus,NA,NA,pooled,longitudinal,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Germany,Mecklenburg Western Pomerania,NA,NA,NA,NA,NA,NA,2012,July,2013,July,1,1,1,1,No
insectivorous bats carry host specific astroviruses and coronaviruses across different regions in germany,Fischer et al.,Infect Genet Evol,2016,74,6,0.081081,Vespertilionidae,Myotis,Myotis nattereri,1,alphacoronavirus,NA,NA,pooled,longitudinal,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Germany,North Rhine Westphalia,NA,NA,NA,NA,2014,NA,NA,July,NA,September,1,1,0,0,No
insectivorous bats carry host specific astroviruses and coronaviruses across different regions in germany,Fischer et al.,Infect Genet Evol,2016,34,0,0,Vespertilionidae,Myotis,Myotis daubentonii,1,genus not specified,NA,NA,pooled,longitudinal,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Germany,North Rhine Westphalia,NA,NA,NA,NA,2014,NA,NA,July,NA,September,1,1,0,0,No
isolation and characterization of a bat sars-like coronavirus that uses the ace2 receptor,Ge et al.,Nature,2013,14,1,0.071429,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,NA,SL-CoV RsSHC014 and Rs3367,repeat,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,Yunnan,Kunming,NA,NA,NA,2011,NA,NA,April,NA,April,0,0,0,1,No
isolation and characterization of a bat sars-like coronavirus that uses the ace2 receptor,Ge et al.,Nature,2013,10,3,0.3,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,NA,SL-CoV RsSHC014 and Rs3367,repeat,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,Yunnan,Kunming,NA,NA,NA,2011,NA,NA,October,NA,October,0,1,0,0,No
isolation and characterization of a bat sars-like coronavirus that uses the ace2 receptor,Ge et al.,Nature,2013,54,4,0.074074,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,NA,SL-CoV RsSHC014 and Rs3367,repeat,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,Yunnan,Kunming,NA,NA,NA,2012,NA,NA,May,NA,May,0,0,0,1,No
isolation and characterization of a bat sars-like coronavirus that uses the ace2 receptor,Ge et al.,Nature,2013,39,19,0.487179,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,NA,SL-CoV RsSHC014 and Rs3367,repeat,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,Yunnan,Kunming,NA,NA,NA,2012,NA,NA,September,NA,September,0,1,0,0,No
intraspecies diversity of sars-like coronaviruses in rhinolophus sinicus and its implications for the origin of sars coronaviruses in humans,Yuan et al.,J Gen Virol,2010,24,1,0.041667,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,NA,Bt-SLCoV Rs672,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Guizhou,NA,NA,NA,NA,2006,NA,NA,September,NA,September,0,1,0,0,No
intraspecies diversity of sars-like coronaviruses in rhinolophus sinicus and its implications for the origin of sars coronaviruses in humans,Yuan et al.,J Gen Virol,2010,24,1,0.041667,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,NA,Bt-SLCoV Rs806,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Hubei,NA,NA,NA,NA,2006,NA,NA,September,NA,September,0,1,0,0,No
"longitudinal surveillance of betacoronaviruses in fruit bats in yunnan province, china during 2009-2016",Luo et al.,Virol Sin,2018,114,7,0.061404,Pteropodidae,Rousettus,NA,NA,betacoronavirus,NA,BatCoV HKU9,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,Yunnan,Jinghong,NA,NA,NA,2009,NA,NA,NA,NA,NA,1,1,1,1,Yes
"longitudinal surveillance of betacoronaviruses in fruit bats in yunnan province, china during 2009-2016",Luo et al.,Virol Sin,2018,42,28,0.666667,Pteropodidae,Rousettus,Rousettus leschenaultii,1,betacoronavirus,NA,BatCoV HKU9,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,Yunnan,Chuxiong,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
"longitudinal surveillance of betacoronaviruses in fruit bats in yunnan province, china during 2009-2016",Luo et al.,Virol Sin,2018,50,4,0.08,Pteropodidae,Rousettus,Rousettus leschenaultii,1,betacoronavirus,NA,BatCoV HKU9,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,Yunnan,Mengla,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
"longitudinal surveillance of betacoronaviruses in fruit bats in yunnan province, china during 2009-2016",Luo et al.,Virol Sin,2018,114,1,0.008772,Pteropodidae,Rousettus,Rousettus leschenaultii,1,betacoronavirus,NA,BatCoV HKU9,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,Yunnan,Chuxiong,NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
"longitudinal surveillance of betacoronaviruses in fruit bats in yunnan province, china during 2009-2016",Luo et al.,Virol Sin,2018,57,5,0.087719,Pteropodidae,Rousettus,NA,NA,betacoronavirus,NA,BatCoV HKU9,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,Yunnan,Mengla,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
"longitudinal surveillance of betacoronaviruses in fruit bats in yunnan province, china during 2009-2016",Luo et al.,Virol Sin,2018,57,3,0.052632,Pteropodidae,Eonycteris,Eonycteris spelaea,1,betacoronavirus,NA,BatCoV GCCDC1,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,Yunnan,Mengla,NA,NA,NA,2015,NA,NA,NA,NA,NA,1,1,1,1,Yes
"longitudinal surveillance of betacoronaviruses in fruit bats in yunnan province, china during 2009-2016",Luo et al.,Virol Sin,2018,53,1,0.018868,Pteropodidae,Rousettus,NA,NA,betacoronavirus,NA,BatCoV HKU9,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,Yunnan,Mengla,NA,NA,NA,2016,NA,NA,NA,NA,NA,1,1,1,1,Yes
"longitudinal surveillance of betacoronaviruses in fruit bats in yunnan province, china during 2009-2016",Luo et al.,Virol Sin,2018,53,10,0.188679,Pteropodidae,Eonycteris,Eonycteris spelaea,1,betacoronavirus,NA,BatCoV GCCDC1,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,China,Yunnan,Mengla,NA,NA,NA,2016,NA,NA,NA,NA,NA,1,1,1,1,Yes
"mers-related betacoronavirus in vespertilio superans bats, china",Yang Li et al.,Emerg Infect Dis,2014,32,5,0.15625,Vespertilionidae,Vespertilio,Vespertilio sinensis,1,betacoronavirus,Merbecovirus,Bat SL-CoV WIV16,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,NA,Southwest China,NA,NA,NA,2013,NA,NA,June,NA,June,1,0,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,29,0,0,Emballonuridae,Taphozous,Taphozous perforatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,oropharyngeal,swab,Saudi Arabia,Bisha,Bisha ruins,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,25,1,0.04,Emballonuridae,Taphozous,Taphozous perforatus,1,betacoronavirus,Merbecovirus,MERS EMC/2012,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Saudi Arabia,Bisha,Bisha ruins,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,25,1,0.04,Emballonuridae,Taphozous,Taphozous perforatus,1,alphacoronavirus,NA,bovine respiratory CoV or Kenya bat CoV BtKY86,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Saudi Arabia,Bisha,Bisha ruins,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,8,0,0,Emballonuridae,Taphozous,Taphozous perforatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,urinary,tissue,Saudi Arabia,Bisha,Bisha ruins,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,22,0,0,Emballonuridae,Taphozous,Taphozous perforatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,blood or serum,sera,Saudi Arabia,Bisha,Bisha ruins,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,10,1,0.1,Emballonuridae,Taphozous,Taphozous perforatus,1,alphacoronavirus,NA,bovine respiratory CoV or Kenya bat CoV BtKY86,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Saudi Arabia,Bisha,Bisha ruins,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,25,0,0,Pteropodidae,Eidolon,Eidolon helvum,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,oropharyngeal,swab,Saudi Arabia,Bisha,Bisha town center,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,25,1,0.04,Pteropodidae,Eidolon,Eidolon helvum,1,betacoronavirus,NA,Eidolon bat CoV HKU1,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Saudi Arabia,Bisha,Bisha town center,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,25,4,0.16,Pteropodidae,Eidolon,Eidolon helvum,1,alphacoronavirus,NA,Kenya bat CoV BtKY86,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Saudi Arabia,Bisha,Bisha town center,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,13,0,0,Pteropodidae,Eidolon,Eidolon helvum,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,urinary,tissue,Saudi Arabia,Bisha,Bisha town center,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,19,0,0,Pteropodidae,Eidolon,Eidolon helvum,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,blood or serum,sera,Saudi Arabia,Bisha,Bisha town center,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,3,0,0,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,oropharyngeal,swab,Saudi Arabia,Bisha,Bisha town center,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,3,0,0,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Saudi Arabia,Bisha,Bisha town center,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,1,0,0,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,urinary,tissue,Saudi Arabia,Bisha,Bisha town center,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,2,0,0,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,blood or serum,sera,Saudi Arabia,Bisha,Bisha town center,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,36,0,0,Rhinopomatidae,Rhinopoma,Rhinopoma hardwickii,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,oropharyngeal,swab,Saudi Arabia,Bisha,Naqi and Old Naqi,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,35,0,0,Rhinopomatidae,Rhinopoma,Rhinopoma hardwickii,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Saudi Arabia,Bisha,Naqi and Old Naqi,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,4,0,0,Rhinopomatidae,Rhinopoma,Rhinopoma hardwickii,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,urinary,tissue,Saudi Arabia,Bisha,Naqi and Old Naqi,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,15,0,0,Rhinopomatidae,Rhinopoma,Rhinopoma hardwickii,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Saudi Arabia,Bisha,Naqi and Old Naqi,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,1,0,0,Rhinopomatidae,Rhinopoma,Rhinopoma microphyllum,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,oropharyngeal,swab,Saudi Arabia,Bisha,Old Naqi,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,1,0,0,Rhinopomatidae,Rhinopoma,Rhinopoma microphyllum,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Saudi Arabia,Bisha,Old Naqi,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,1,0,0,Vespertilionidae,Eptesicus,Eptesicus bottae,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,oropharyngeal,swab,Saudi Arabia,Bisha,Bisha Ruins,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,1,0,0,Vespertilionidae,Eptesicus,Eptesicus bottae,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Saudi Arabia,Bisha,Bisha Ruins,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,1,0,0,Vespertilionidae,Eptesicus,Eptesicus bottae,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,urinary,tissue,Saudi Arabia,Bisha,Bisha Ruins,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,32,0,0,Vespertilionidae,Eptesicus,Eptesicus bottae,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Saudi Arabia,Bisha,Bisha Ruins,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus kuhlii,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,oropharyngeal,swab,Saudi Arabia,Bisha,Bisha Ruins,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus kuhlii,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Saudi Arabia,Bisha,Bisha Ruins,NA,NA,NA,2012,October,NA,NA,NA,NA,0,1,0,0,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,209,2,0.009569,Rhinopomatidae,Rhinopoma,Rhinopoma hardwickii,1,betacoronavirus,NA,canine respiratory CoV,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Saudi Arabia,Bisha,Greater Bisha area,NA,NA,NA,2013,April,NA,NA,NA,NA,0,0,0,1,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,209,90,0.430622,Rhinopomatidae,Rhinopoma,Rhinopoma hardwickii,1,alphacoronavirus,NA,"canine coronavirus (5), miniopterus bat coronavirus (2), chaerephron bat coronavirus (84)",single,cross-sectional,PCR,PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Saudi Arabia,Bisha,Greater Bisha area,NA,NA,NA,2013,April,NA,NA,NA,NA,0,0,0,1,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,203,0,0,Emballonuridae,Taphozous,Taphozous perforatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Saudi Arabia,Bisha,Bisha Ruins,NA,NA,NA,2013,April,NA,NA,NA,NA,0,0,0,1,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,9,0,0,Vespertilionidae,Pipistrellus,Pipistrellus kuhlii,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,oropharyngeal,swab,Saudi Arabia,Unaizah,Greater Unaizah area,NA,NA,NA,2013,April,NA,NA,NA,NA,0,0,0,1,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,263,126,0.479087,Vespertilionidae,Pipistrellus,Pipistrellus kuhlii,1,alphacoronavirus,NA,"P.kuh-Spain (69), canine coronavirus (3), P.pyg/Germany (37), HCoV NL63 (1), Rousettus CoV HKU10 (2), porcine epidemic diarrhea virus (11), Cardioderma CoV (2), Hipposideros CoV HKU10 (1)",single,cross-sectional,PCR,PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Saudi Arabia,Unaizah,Greater Unaizah area,NA,NA,NA,2013,April,NA,NA,NA,NA,0,0,0,1,No
"middle east respiratory syndrome coronavirus in bats, saudi arabia",Memish et al.,Emerg Infect Dis,2013,5,0,0,Vespertilionidae,Pipistrellus,Pipistrellus kuhlii,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,oropharyngeal,swab,Saudi Arabia,Riyadh,Greater Riyadh area,NA,NA,NA,2013,April,NA,NA,NA,NA,0,0,0,1,No
"molecular detection of viruses in kenyan bats and discovery of novel astroviruses, caliciviruses and rotaviruses",Waruhiu et al.,Virol Sin,2017,14,1,0.071429,Pteropodidae,Eidolon,Eidolon helvum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Kenya,Monbasa,NA,NA,NA,NA,NA,NA,2012,November,2015,November,1,1,1,1,No
"molecular detection of viruses in kenyan bats and discovery of novel astroviruses, caliciviruses and rotaviruses",Waruhiu et al.,Virol Sin,2017,33,2,0.060606,Hipposideridae,Hipposideros,Hipposideros caffer,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Kenya,Taita,NA,NA,NA,NA,NA,NA,2012,November,2015,November,1,1,1,1,No
"molecular detection of viruses in kenyan bats and discovery of novel astroviruses, caliciviruses and rotaviruses",Waruhiu et al.,Virol Sin,2017,150,22,0.146667,Molossidae,Otomops,Otomops martiensseni,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Kenya,Kajiado,NA,NA,NA,NA,NA,NA,2012,November,2015,November,1,1,1,1,No
"molecular detection of viruses in kenyan bats and discovery of novel astroviruses, caliciviruses and rotaviruses",Waruhiu et al.,Virol Sin,2017,185,4,0.021622,Pteropodidae,Eidolon,Eidolon helvum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Kenya,Kisii,NA,NA,NA,NA,NA,NA,2012,November,2015,November,1,1,1,1,No
"molecular detection of viruses in kenyan bats and discovery of novel astroviruses, caliciviruses and rotaviruses",Waruhiu et al.,Virol Sin,2017,185,16,0.086486,Pteropodidae,Eidolon,Eidolon helvum,1,betacoronavirus,NA,HKU9-related,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Kenya,Kisii,NA,NA,NA,NA,NA,NA,2012,November,2015,November,1,1,1,1,No
"molecular detection of viruses in kenyan bats and discovery of novel astroviruses, caliciviruses and rotaviruses",Waruhiu et al.,Virol Sin,2017,25,1,0.04,Pteropodidae,Eidolon,Eidolon helvum,1,betacoronavirus,NA,HKU9-related,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Kenya,Vihiga,NA,NA,NA,NA,NA,NA,2012,November,2015,November,1,1,1,1,No
"molecular detection of viruses in kenyan bats and discovery of novel astroviruses, caliciviruses and rotaviruses",Waruhiu et al.,Virol Sin,2017,45,0,0,Pteropodidae,Eidolon,Eidolon helvum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Kenya,Kisumu,NA,NA,NA,NA,NA,NA,2012,November,2015,November,1,1,1,1,No
"molecular detection of viruses in kenyan bats and discovery of novel astroviruses, caliciviruses and rotaviruses",Waruhiu et al.,Virol Sin,2017,75,0,0,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Kenya,Trans-Nzoia,NA,NA,NA,NA,NA,NA,2012,November,2015,November,1,1,1,1,No
molecular diversity of coronaviruses in bats,Woo et al.,Virology,2006,2,0,0,Pteropodidae,Cynopterus,Cynopterus sphinx,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Hong Kong,NA,NA,NA,NA,NA,NA,2004,April,2005,July,1,1,1,1,No
molecular diversity of coronaviruses in bats,Woo et al.,Virology,2006,13,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Hong Kong,NA,NA,NA,NA,NA,NA,2004,April,2005,July,1,1,1,1,No
molecular diversity of coronaviruses in bats,Woo et al.,Virology,2006,18,0,0,Hipposideridae,Hipposideros,Hipposideros pomona,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Hong Kong,NA,NA,NA,NA,NA,NA,2004,April,2005,July,1,1,1,1,No
molecular diversity of coronaviruses in bats,Woo et al.,Virology,2006,51,1,0.019608,Miniopteridae,Miniopterus,Miniopterus magnater,1,alphacoronavirus,NA,Bat-CoV HKU7,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Hong Kong,New territories,NA,NA,NA,NA,NA,2004,April,2005,July,1,1,1,1,No
molecular diversity of coronaviruses in bats,Woo et al.,Virology,2006,25,4,0.16,Miniopteridae,Miniopterus,Miniopterus pusillus,1,alphacoronavirus,NA,Bat-CoV HKU8 (n=1) and previously reported virus (n=3),pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Hong Kong,New territories,NA,NA,NA,NA,NA,2004,April,2005,July,1,1,1,1,No
molecular diversity of coronaviruses in bats,Woo et al.,Virology,2006,8,0,0,Vespertilionidae,Myotis,Myotis chinensis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Hong Kong,New territories,NA,NA,NA,NA,NA,2004,April,2005,July,1,1,1,1,No
molecular diversity of coronaviruses in bats,Woo et al.,Virology,2006,23,1,0.043478,Vespertilionidae,Myotis,Myotis pilosus,1,alphacoronavirus,NA,Bat-Cov HKU6,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Hong Kong,NA,NA,NA,NA,NA,NA,2004,April,2005,July,1,1,1,1,No
molecular diversity of coronaviruses in bats,Woo et al.,Virology,2006,7,0,0,Vespertilionidae,Nyctalus,Nyctalus noctula,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Hong Kong,New territories,NA,NA,NA,NA,NA,2004,April,2005,July,1,1,1,1,No
molecular diversity of coronaviruses in bats,Woo et al.,Virology,2006,14,4,0.285714,Vespertilionidae,Pipistrellus,Pipistrellus abramus,1,betacoronavirus,NA,Bat-Cov HKU5,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Hong Kong,NA,NA,NA,NA,NA,NA,2004,April,2005,July,1,1,1,1,No
molecular diversity of coronaviruses in bats,Woo et al.,Virology,2006,7,0,0,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Hong Kong,New territories,NA,NA,NA,NA,NA,2004,April,2005,July,1,1,1,1,No
molecular diversity of coronaviruses in bats,Woo et al.,Virology,2006,118,2,0.016949,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,alphacoronavirus,NA,Bat-CoV HKU2,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Hong Kong,"New territories, Hong Kong Island",NA,NA,NA,NA,NA,2004,April,2005,July,1,1,1,1,No
molecular diversity of coronaviruses in bats,Woo et al.,Virology,2006,118,21,0.177966,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,NA,Bat-SARS-CoV,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Hong Kong,New territories,NA,NA,NA,NA,NA,2004,April,2005,July,1,1,1,1,No
molecular diversity of coronaviruses in bats,Woo et al.,Virology,2006,2,0,0,Pteropodidae,Rousettus,Rousettus leschenaultii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Hong Kong,NA,NA,NA,NA,NA,NA,2004,April,2005,July,1,1,1,1,No
molecular diversity of coronaviruses in bats,Woo et al.,Virology,2006,21,4,0.190476,Vespertilionidae,Tylonycteris,Tylonycteris pachypus,1,betacoronavirus,NA,Bat-CoV HKU4,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Hong Kong,New territories,NA,NA,NA,NA,NA,2004,April,2005,July,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,2,0,0,Rhinolophidae,Rhinolophus,Rhinolophus mehelyi,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,skin swab,swab,Italy,Sardinia,Grotta sa Rocca Ulari (Borutta),NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,2,0,0,Rhinolophidae,Rhinolophus,Rhinolophus mehelyi,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Sardinia,Grotta sa Rocca Ulari (Borutta),NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,3,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,skin swab,swab,Italy,Sardinia,"Grotta sa Rocca Ulari (Borutta), Galleria Casteldoria (S.M Coghinas), Diga S. Chiara (Ula-Tirso)",NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,3,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Italy,Sardinia,"Grotta sa Rocca Ulari (Borutta), Galleria Casteldoria (S.M Coghinas), Diga S. Chiara (Ula-Tirso)",NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,3,1,0.333333,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,betacoronavirus,Sarbecovirus,SarBatCov1,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Sardinia,"Grotta sa Rocca Ulari (Borutta), Galleria Casteldoria (S.M Coghinas), Diga S. Chiara (Ula-Tirso)",NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,9,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,skin swab,swab,Italy,Sardinia,Grotta sa Rocca Ulari (Borutta),NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,7,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Sardinia,Grotta sa Rocca Ulari (Borutta),NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,8,0,0,Vespertilionidae,Myotis,Myotis punicus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,skin swab,swab,Italy,Sardinia,"Grotta sa Rocca Ulari (Borutta), Galleria Casteldoria (S.M Coghinas), Tilipera (Bonorva)",NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,8,0,0,Vespertilionidae,Myotis,Myotis punicus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Italy,Sardinia,"Grotta sa Rocca Ulari (Borutta), Galleria Casteldoria (S.M Coghinas), Tilipera (Bonorva)",NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,6,0,0,Vespertilionidae,Myotis,Myotis punicus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Sardinia,"Grotta sa Rocca Ulari (Borutta), Galleria Casteldoria (S.M Coghinas), Tilipera (Bonorva)",NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,3,0,0,Vespertilionidae,Myotis,Myotis capaccinii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,skin swab,swab,Italy,Sardinia,"Galleria Casteldoria (S.M Coghinas), Grotta Verde (Alghero)",NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,4,0,0,Vespertilionidae,Myotis,Myotis capaccinii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Italy,Sardinia,"Galleria Casteldoria (S.M Coghinas), Grotta Verde (Alghero)",NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,3,0,0,Vespertilionidae,Myotis,Myotis capaccinii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Sardinia,"Galleria Casteldoria (S.M Coghinas), Grotta Verde (Alghero)",NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,3,0,0,Vespertilionidae,Myotis,Myotis emarginatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,skin swab,swab,Italy,Sardinia,"Galleria Casteldoria (S.M Coghinas), Mularza Noa (Bolotana)",NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,2,0,0,Vespertilionidae,Myotis,Myotis emarginatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Italy,Sardinia,"Galleria Casteldoria (S.M Coghinas), Mularza Noa (Bolotana)",NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,2,0,0,Vespertilionidae,Myotis,Myotis emarginatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Sardinia,"Galleria Casteldoria (S.M Coghinas), Mularza Noa (Bolotana)",NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,1,0,0,Vespertilionidae,Plecotus,Plecotus sardus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Italy,Sardinia,Diga S. Chiara (Ula-Tirso),NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus savii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,skin swab,swab,Italy,Sardinia,"Monte Corallinu (Doragali),Mularza Noa (Bolotana)",NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus savii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Italy,Sardinia,"Monte Corallinu (Doragali),Mularza Noa (Bolotana)",NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,2,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,skin swab,swab,Italy,Sardinia,Tilipera (Bonorva),NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus kuhlii,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Sardinia,Mularza Noa (Bolotana),NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,1,0,0,Vespertilionidae,Plecotus,Plecotus auritus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,skin swab,swab,Italy,Sardinia,Belvi,NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,1,0,0,Vespertilionidae,Plecotus,Plecotus auritus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Italy,Sardinia,Belvi,NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,1,1,1,Vespertilionidae,Plecotus,Plecotus auritus,1,betacoronavirus,Sarbecovirus,SarBatCov1,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Sardinia,Belvi,NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,1,0,0,Vespertilionidae,Plecotus,Plecotus austriacus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Italy,Sardinia,Grotta Verde (Alghero),NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,1,0,0,Vespertilionidae,Nyctalus,Nyctalus leisleri,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,skin swab,swab,Italy,Sardinia,Mularza Noa (Bolotana),NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,1,0,0,Vespertilionidae,Nyctalus,Nyctalus leisleri,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Italy,Sardinia,Mularza Noa (Bolotana),NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,1,0,0,Vespertilionidae,Eptesicus,Eptesicus serotinus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Sardinia,Grotta Verde (Alghero),NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,1,0,0,Molossidae,Tadarida,Tadarida teniotis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,skin swab,swab,Italy,Sardinia,Grotta Verde (Alghero),NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,1,0,0,Molossidae,Tadarida,Tadarida teniotis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Italy,Sardinia,Grotta Verde (Alghero),NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
molecular identification of betacoronavirus in bats from sardinia (italy): first detection and phylogeny,Lecis et al.,Virus Genes,2019,1,1,1,Molossidae,Tadarida,Tadarida teniotis,1,betacoronavirus,Sarbecovirus,SarBatCov1,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Sardinia,Grotta Verde (Alghero),NA,NA,NA,NA,NA,2015,November,2016,November,1,1,1,1,No
"molecular survey of rna viruses in hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses",Kemenesi et al.,Vector Borne Zoonotic Dis,2014,3,1,0.333333,Rhinolophidae,Rhinolophus,Rhinolophus euryale,1,betacoronavirus,Sarbecovirus,NA,pooled,cross-sectional,PCR,"RT-PCR,semi-nested RT-PCR,nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Hungary,NA,"31 (positive), 32",NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,No
"molecular survey of rna viruses in hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses",Kemenesi et al.,Vector Borne Zoonotic Dis,2014,12,1,0.083333,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,semi-nested RT-PCR,nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Hungary,NA,"1, 2 (positive), 4, 26, 40",NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,No
"molecular survey of rna viruses in hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses",Kemenesi et al.,Vector Borne Zoonotic Dis,2014,3,1,0.333333,Rhinolophidae,Rhinolophus,Rhinolophus hipposideros,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,semi-nested RT-PCR,nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Hungary,NA,2 (positive),NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,No
"molecular survey of rna viruses in hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses",Kemenesi et al.,Vector Borne Zoonotic Dis,2014,13,0,0,Vespertilionidae,Barbastella,Barbastella barbastellus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,semi-nested RT-PCR,nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Hungary,NA,"3, 12, 21, 30, 34, 40, 42",NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,No
"molecular survey of rna viruses in hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses",Kemenesi et al.,Vector Borne Zoonotic Dis,2014,7,0,0,Vespertilionidae,Eptesicus,Eptesicus serotinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,semi-nested RT-PCR,nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Hungary,NA,"3, 11, 21, 42",NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,No
"molecular survey of rna viruses in hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses",Kemenesi et al.,Vector Borne Zoonotic Dis,2014,15,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,semi-nested RT-PCR,nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Hungary,NA,"1, 3, 19",NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,No
"molecular survey of rna viruses in hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses",Kemenesi et al.,Vector Borne Zoonotic Dis,2014,16,0,0,Vespertilionidae,Myotis,Myotis alcathoe,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,semi-nested RT-PCR,nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Hungary,NA,"16, 18, 19, 21, 27, 28, 29, 30, 35, 36, 40",NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,No
"molecular survey of rna viruses in hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses",Kemenesi et al.,Vector Borne Zoonotic Dis,2014,125,0,0,Vespertilionidae,Myotis,Myotis bechsteinii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,semi-nested RT-PCR,nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Hungary,NA,"2, 3, 4, 8, 13, 12, 14, 15, 17, 19, 22, 29, 30, 21, 35, 36, 43",NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,No
"molecular survey of rna viruses in hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses",Kemenesi et al.,Vector Borne Zoonotic Dis,2014,3,0,0,Vespertilionidae,Myotis,Myotis brandtii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,semi-nested RT-PCR,nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Hungary,NA,"7, 8, 45",NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,No
"molecular survey of rna viruses in hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses",Kemenesi et al.,Vector Borne Zoonotic Dis,2014,11,0,0,Vespertilionidae,Myotis,Myotis dasycneme,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,semi-nested RT-PCR,nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Hungary,NA,"2, 3, 37",NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,No
"molecular survey of rna viruses in hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses",Kemenesi et al.,Vector Borne Zoonotic Dis,2014,81,1,0.012346,Vespertilionidae,Myotis,Myotis daubentonii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,semi-nested RT-PCR,nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Hungary,NA,"1 (positive), 2, 3, 4, 12, 13, 14, 15, 17, 18, 21, 22, 25, 27, 31, 33, 34, 37, 38, 40, 41, 43, 44",NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,No
"molecular survey of rna viruses in hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses",Kemenesi et al.,Vector Borne Zoonotic Dis,2014,5,0,0,Vespertilionidae,Myotis,Myotis emarginatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,semi-nested RT-PCR,nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Hungary,NA,"14, 22, 35, 38",NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,No
"molecular survey of rna viruses in hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses",Kemenesi et al.,Vector Borne Zoonotic Dis,2014,29,1,0.034483,Vespertilionidae,Myotis,Myotis myotis,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,semi-nested RT-PCR,nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Hungary,NA,"1, 3, 4, 6, 10, 12, 13, 14 (positive), 24, 42, 45",NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,No
"molecular survey of rna viruses in hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses",Kemenesi et al.,Vector Borne Zoonotic Dis,2014,1,0,0,Vespertilionidae,Myotis,Myotis mystacinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,semi-nested RT-PCR,nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Hungary,NA,9,NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,No
"molecular survey of rna viruses in hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses",Kemenesi et al.,Vector Borne Zoonotic Dis,2014,37,1,0.027027,Vespertilionidae,Myotis,Myotis nattereri,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,semi-nested RT-PCR,nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Hungary,NA,"3, 4 (positive), 10, 12, 13, 14, 15, 21, 31, 35",NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,No
"molecular survey of rna viruses in hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses",Kemenesi et al.,Vector Borne Zoonotic Dis,2014,10,0,0,Vespertilionidae,Myotis,Myotis blythii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,semi-nested RT-PCR,nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Hungary,NA,"3, 4, 12, 13, 14, 23",NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,No
"molecular survey of rna viruses in hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses",Kemenesi et al.,Vector Borne Zoonotic Dis,2014,6,0,0,Vespertilionidae,Nyctalus,Nyctalus leisleri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,semi-nested RT-PCR,nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Hungary,NA,"19, 20, 21, 28",NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,No
"molecular survey of rna viruses in hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses",Kemenesi et al.,Vector Borne Zoonotic Dis,2014,14,0,0,Vespertilionidae,Nyctalus,Nyctalus noctula,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,semi-nested RT-PCR,nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Hungary,NA,"3, 13, 19, 21, 22, 28, 39",NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,No
"molecular survey of rna viruses in hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses",Kemenesi et al.,Vector Borne Zoonotic Dis,2014,3,0,0,Vespertilionidae,Pipistrellus,Pipistrellus nathusii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,semi-nested RT-PCR,nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Hungary,NA,"7, 20",NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,No
"molecular survey of rna viruses in hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses",Kemenesi et al.,Vector Borne Zoonotic Dis,2014,12,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,semi-nested RT-PCR,nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Hungary,NA,"3, 19, 27, 28, 36, 42",NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,No
"molecular survey of rna viruses in hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses",Kemenesi et al.,Vector Borne Zoonotic Dis,2014,6,2,0.333333,Vespertilionidae,Pipistrellus,Pipistrellus pygmaeus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,semi-nested RT-PCR,nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Hungary,NA,"6, 19, 44 (positive)",NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,No
"molecular survey of rna viruses in hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses",Kemenesi et al.,Vector Borne Zoonotic Dis,2014,29,0,0,Vespertilionidae,Plecotus,Plecotus auritus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,semi-nested RT-PCR,nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Hungary,NA,"3, 4, 5, 10, 11, 12, 13, 14, 15, 22, 28, 42",NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,No
"molecular survey of rna viruses in hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses",Kemenesi et al.,Vector Borne Zoonotic Dis,2014,3,0,0,Vespertilionidae,Plecotus,Plecotus austriacus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,semi-nested RT-PCR,nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Hungary,NA,"9, 10, 42",NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,No
"molecular survey of rna viruses in hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses",Kemenesi et al.,Vector Borne Zoonotic Dis,2014,3,0,0,Vespertilionidae,Vespertilio,Vespertilio murinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,"RT-PCR,semi-nested RT-PCR,nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Hungary,NA,28,NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,No
"new alphacoronavirus in mystacina tuberculata bats, new zealand",Hall et al.,Emerg Infect Dis,2014,4,4,1,Mystacinidae,Mystacina,Mystacina tuberculata,1,alphacoronavirus,NA,Mystacina bat CoV/New Zealand/2013,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,New Zealand,Whenua hou,NA,-46.78333333,167.6333333,NA,NA,NA,2008,NA,2013,NA,1,1,1,1,No
no evidence of coronavirus infection by reverse transcriptase-pcr in bats in belgium,Van Gucht et al.,J Wildl Dis,2014,57,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp_Other,"E, RdRp",lung or respiratory,tissue,Belgium,NA,"80% dead near homes, 20% dead in animal rescue centers",NA,NA,NA,NA,NA,2008,NA,2013,NA,1,1,1,1,Yes
no evidence of coronavirus infection by reverse transcriptase-pcr in bats in belgium,Van Gucht et al.,J Wildl Dis,2014,40,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp_Other,"E, RdRp",intestine,tissue,Belgium,NA,"80% dead near homes, 20% dead in animal rescue centers",NA,NA,NA,NA,NA,2008,NA,2013,NA,1,1,1,1,Yes
no evidence of coronavirus infection by reverse transcriptase-pcr in bats in belgium,Van Gucht et al.,J Wildl Dis,2014,19,0,0,Vespertilionidae,Pipistrellus,Pipistrellus nathusii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp_Other,"E, RdRp",lung or respiratory,tissue,Belgium,NA,"80% dead near homes, 20% dead in animal rescue centers",NA,NA,NA,NA,NA,2008,NA,2013,NA,1,1,1,1,Yes
no evidence of coronavirus infection by reverse transcriptase-pcr in bats in belgium,Van Gucht et al.,J Wildl Dis,2014,13,0,0,Vespertilionidae,Pipistrellus,Pipistrellus nathusii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp_Other,"E, RdRp",intestine,tissue,Belgium,NA,"80% dead near homes, 20% dead in animal rescue centers",NA,NA,NA,NA,NA,2008,NA,2013,NA,1,1,1,1,Yes
no evidence of coronavirus infection by reverse transcriptase-pcr in bats in belgium,Van Gucht et al.,J Wildl Dis,2014,3,0,0,Vespertilionidae,Myotis,Myotis daubentonii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp_Other,"E, RdRp",lung or respiratory,tissue,Belgium,NA,"80% dead near homes, 20% dead in animal rescue centers",NA,NA,NA,NA,NA,2008,NA,2013,NA,1,1,1,1,Yes
no evidence of coronavirus infection by reverse transcriptase-pcr in bats in belgium,Van Gucht et al.,J Wildl Dis,2014,5,0,0,Vespertilionidae,Plecotus,Plecotus auritus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp_Other,"E, RdRp",lung or respiratory,tissue,Belgium,NA,"80% dead near homes, 20% dead in animal rescue centers",NA,NA,NA,NA,NA,2008,NA,2013,NA,1,1,1,1,Yes
no evidence of coronavirus infection by reverse transcriptase-pcr in bats in belgium,Van Gucht et al.,J Wildl Dis,2014,3,0,0,Vespertilionidae,Plecotus,Plecotus auritus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp_Other,"E, RdRp",intestine,tissue,Belgium,NA,"80% dead near homes, 20% dead in animal rescue centers",NA,NA,NA,NA,NA,2008,NA,2013,NA,1,1,1,1,Yes
no evidence of coronavirus infection by reverse transcriptase-pcr in bats in belgium,Van Gucht et al.,J Wildl Dis,2014,1,0,0,Vespertilionidae,Nyctalus,Nyctalus noctula,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp_Other,"E, RdRp",lung or respiratory,tissue,Belgium,NA,"80% dead near homes, 20% dead in animal rescue centers",NA,NA,NA,NA,NA,2008,NA,2013,NA,1,1,1,1,Yes
no evidence of coronavirus infection by reverse transcriptase-pcr in bats in belgium,Van Gucht et al.,J Wildl Dis,2014,1,0,0,Vespertilionidae,Eptesicus,Eptesicus serotinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp_Other,"E, RdRp",lung or respiratory,tissue,Belgium,NA,"80% dead near homes, 20% dead in animal rescue centers",NA,NA,NA,NA,NA,2008,NA,2013,NA,1,1,1,1,Yes
novel alphacoronaviruses and paramyxoviruses cocirculate with type 1 and severe acute respiratory system (sars)-related betacoronaviruses in synanthropic bats of luxembourg,Pauly et al.,Appl Environ Microbiol,2017,44,8,0.181818,Vespertilionidae,Myotis,Myotis emarginatus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Luxembourg,Lintgen,NA,NA,NA,NA,2016,June,NA,NA,NA,NA,1,0,0,0,No
novel alphacoronaviruses and paramyxoviruses cocirculate with type 1 and severe acute respiratory system (sars)-related betacoronaviruses in synanthropic bats of luxembourg,Pauly et al.,Appl Environ Microbiol,2017,44,1,0.022727,Vespertilionidae,Myotis,Myotis emarginatus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Luxembourg,Ettelbruck,NA,NA,NA,NA,2016,June,NA,NA,NA,NA,1,0,0,0,No
novel alphacoronaviruses and paramyxoviruses cocirculate with type 1 and severe acute respiratory system (sars)-related betacoronaviruses in synanthropic bats of luxembourg,Pauly et al.,Appl Environ Microbiol,2017,45,0,0,Vespertilionidae,Myotis,Myotis emarginatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Luxembourg,Marienthal,NA,NA,NA,NA,2016,June,NA,NA,NA,NA,1,0,0,0,No
novel alphacoronaviruses and paramyxoviruses cocirculate with type 1 and severe acute respiratory system (sars)-related betacoronaviruses in synanthropic bats of luxembourg,Pauly et al.,Appl Environ Microbiol,2017,33,1,0.030303,Vespertilionidae,Myotis,Myotis emarginatus,1,betacoronavirus,Embecovirus,BetaCov1,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Luxembourg,Bissen,NA,NA,NA,NA,2016,June,NA,NA,NA,NA,1,0,0,0,No
novel alphacoronaviruses and paramyxoviruses cocirculate with type 1 and severe acute respiratory system (sars)-related betacoronaviruses in synanthropic bats of luxembourg,Pauly et al.,Appl Environ Microbiol,2017,44,0,0,Vespertilionidae,Myotis,Myotis emarginatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Luxembourg,Colpach,NA,NA,NA,NA,2016,June,NA,NA,NA,NA,1,0,0,0,No
novel alphacoronaviruses and paramyxoviruses cocirculate with type 1 and severe acute respiratory system (sars)-related betacoronaviruses in synanthropic bats of luxembourg,Pauly et al.,Appl Environ Microbiol,2017,44,2,0.045455,Vespertilionidae,Myotis,Myotis emarginatus,1,betacoronavirus,Embecovirus,BetaCov1,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Luxembourg,Platen,NA,NA,NA,NA,2016,June,NA,NA,NA,NA,1,0,0,0,No
novel bat alphacoronaviruses in southern china support chinese horseshoe bats as an important reservoir for potential novel coronaviruses,Lau et al.,Viruses,2019,3,0,0,Pteropodidae,Cynopterus,Cynopterus sphinx,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,China,Hong Kong,Sheung Wo Hang,NA,NA,NA,NA,NA,2013,NA,2015,NA,1,1,1,1,Yes
novel bat alphacoronaviruses in southern china support chinese horseshoe bats as an important reservoir for potential novel coronaviruses,Lau et al.,Viruses,2019,3,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,China,Guizhou,NA,NA,NA,NA,NA,NA,2013,NA,2015,NA,1,1,1,1,Yes
novel bat alphacoronaviruses in southern china support chinese horseshoe bats as an important reservoir for potential novel coronaviruses,Lau et al.,Viruses,2019,21,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,China,Guizhou,NA,NA,NA,NA,NA,NA,2013,NA,2015,NA,1,1,1,1,Yes
novel bat alphacoronaviruses in southern china support chinese horseshoe bats as an important reservoir for potential novel coronaviruses,Lau et al.,Viruses,2019,182,2,0.010989,Hipposideridae,Hipposideros,Hipposideros pomona,1,alphacoronavirus,NA,Hi-BatCoV HKU10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,China,"Hong Kong, Guangdong",Tai Lam-Shek Kong (HK),NA,NA,NA,NA,NA,2013,NA,2015,NA,1,1,1,1,Yes
novel bat alphacoronaviruses in southern china support chinese horseshoe bats as an important reservoir for potential novel coronaviruses,Lau et al.,Viruses,2019,2,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pulveratus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,China,Hong Kong,Lin Ma Hang Pool,NA,NA,NA,NA,NA,2013,NA,2015,NA,1,1,1,1,Yes
novel bat alphacoronaviruses in southern china support chinese horseshoe bats as an important reservoir for potential novel coronaviruses,Lau et al.,Viruses,2019,1,0,0,Miniopteridae,Miniopterus,Miniopterus magnater,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,China,Hong Kong,Sai Kung,NA,NA,NA,NA,NA,2013,NA,2015,NA,1,1,1,1,Yes
novel bat alphacoronaviruses in southern china support chinese horseshoe bats as an important reservoir for potential novel coronaviruses,Lau et al.,Viruses,2019,56,0,0,Miniopteridae,Miniopterus,Miniopterus pusillus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,China,Hong Kong,"Lin Ma Hang Lead Mine, Sheung Wo Hang, Sai Kung",NA,NA,NA,NA,NA,2013,NA,2015,NA,1,1,1,1,Yes
novel bat alphacoronaviruses in southern china support chinese horseshoe bats as an important reservoir for potential novel coronaviruses,Lau et al.,Viruses,2019,23,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,China,Hong Kong,Sai Kung,NA,NA,NA,NA,NA,2013,NA,2015,NA,1,1,1,1,Yes
novel bat alphacoronaviruses in southern china support chinese horseshoe bats as an important reservoir for potential novel coronaviruses,Lau et al.,Viruses,2019,1,0,0,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,China,Hong Kong,Lin Ma Hang Pool,NA,NA,NA,NA,NA,2013,NA,2015,NA,1,1,1,1,Yes
novel bat alphacoronaviruses in southern china support chinese horseshoe bats as an important reservoir for potential novel coronaviruses,Lau et al.,Viruses,2019,10,0,0,Vespertilionidae,Myotis,Myotis chinensis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,China,"Hong Kong, Guizhou",Sai Kung (HK),NA,NA,NA,NA,NA,2013,NA,2015,NA,1,1,1,1,Yes
novel bat alphacoronaviruses in southern china support chinese horseshoe bats as an important reservoir for potential novel coronaviruses,Lau et al.,Viruses,2019,93,1,0.010753,Vespertilionidae,Myotis,Myotis pilosus,1,alphacoronavirus,NA,CoV-37,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,China,Hong Kong,"Lin Ma Hang Lead Mine, Sai Kung",NA,NA,NA,NA,NA,2013,NA,2015,NA,1,1,1,1,Yes
novel bat alphacoronaviruses in southern china support chinese horseshoe bats as an important reservoir for potential novel coronaviruses,Lau et al.,Viruses,2019,1,0,0,Vespertilionidae,Nyctalus,Nyctalus noctula,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,China,Hong Kong,Yung Shung O Stream,NA,NA,NA,NA,NA,2013,NA,2015,NA,1,1,1,1,Yes
novel bat alphacoronaviruses in southern china support chinese horseshoe bats as an important reservoir for potential novel coronaviruses,Lau et al.,Viruses,2019,6,0,0,Vespertilionidae,Pipistrellus,Pipistrellus abramus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,China,Hong Kong,"Mai Po Nature Reserve, Yung Shung O Stream, Kai Kuk Shue Ha",NA,NA,NA,NA,NA,2013,NA,2015,NA,1,1,1,1,Yes
novel bat alphacoronaviruses in southern china support chinese horseshoe bats as an important reservoir for potential novel coronaviruses,Lau et al.,Viruses,2019,4,0,0,Vespertilionidae,Pipistrellus,Pipistrellus tenuis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,China,Hong Kong,"Kai Kuk Shue Ha, Yung Shung O Stream, Sheung Wo Hang, Lin Ma Hang Pool",NA,NA,NA,NA,NA,2013,NA,2015,NA,1,1,1,1,Yes
novel bat alphacoronaviruses in southern china support chinese horseshoe bats as an important reservoir for potential novel coronaviruses,Lau et al.,Viruses,2019,76,0,0,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,China,Hong Kong,"Tai Lam-Shek Kong, Tai-Lam-Shek Kong, Sai Kung",NA,NA,NA,NA,NA,2013,NA,2015,NA,1,1,1,1,Yes
novel bat alphacoronaviruses in southern china support chinese horseshoe bats as an important reservoir for potential novel coronaviruses,Lau et al.,Viruses,2019,2,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pearsonii,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,China,Guangdong,NA,NA,NA,NA,NA,NA,2013,NA,2015,NA,1,1,1,1,Yes
novel bat alphacoronaviruses in southern china support chinese horseshoe bats as an important reservoir for potential novel coronaviruses,Lau et al.,Viruses,2019,17,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,China,Hong Kong,Tai Lam-Shek Kong,NA,NA,NA,NA,NA,2013,NA,2015,NA,1,1,1,1,Yes
novel bat alphacoronaviruses in southern china support chinese horseshoe bats as an important reservoir for potential novel coronaviruses,Lau et al.,Viruses,2019,272,7,0.025735,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,alphacoronavirus,NA,Rs-BatCoV HKU32,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,China,"Hong Kong, Guizhou",Tai Lam-Shek Kong (HK),NA,NA,NA,NA,NA,2013,NA,2015,NA,1,1,1,1,Yes
novel bat alphacoronaviruses in southern china support chinese horseshoe bats as an important reservoir for potential novel coronaviruses,Lau et al.,Viruses,2019,272,3,0.011029,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,Sarbecovirus,SARSr BatCoV,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,China,"Hong Kong, Guizhou",Tai Lam-Shek Kong (HK),NA,NA,NA,NA,NA,2013,NA,2015,NA,1,1,1,1,Yes
novel bat alphacoronaviruses in southern china support chinese horseshoe bats as an important reservoir for potential novel coronaviruses,Lau et al.,Viruses,2019,240,18,0.075,Vespertilionidae,Tylonycteris,Tylonycteris pachypus,1,betacoronavirus,Merbecovirus,Ty-BatCoV HKU4,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,China,"Hong Kong, Guizhou","Wu Kau Tang, Pok Fu Lam, Sheung Wo Hang, Tai Lam-Shek Kong",NA,NA,NA,NA,NA,2013,NA,2015,NA,1,1,1,1,Yes
novel bat alphacoronaviruses in southern china support chinese horseshoe bats as an important reservoir for potential novel coronaviruses,Lau et al.,Viruses,2019,104,1,0.009615,Vespertilionidae,Tylonycteris,Tylonycteris robustula,1,alphacoronavirus,NA,Tr-BatCoV HKU33,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,China,Guizhou,NA,NA,NA,NA,NA,NA,2013,NA,2015,NA,1,1,1,1,Yes
"novel coronaviruses, astroviruses, adenoviruses and circoviruses in insectivorous bats from northern china",Han et al.,Zoonoses Public Health,2017,26,9,0.346154,Vespertilionidae,Eptesicus,Eptesicus serotinus,1,betacoronavirus,Merbecovirus,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled tissue,tissue,China,Shandong,"Mengyin County (various habitats including karst, caves, city sewers, houses)",NA,NA,NA,2015,NA,NA,March,NA,October,1,1,0,1,Yes
"novel coronaviruses, astroviruses, adenoviruses and circoviruses in insectivorous bats from northern china",Han et al.,Zoonoses Public Health,2017,26,2,0.076923,Vespertilionidae,Eptesicus,Eptesicus serotinus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled tissue,tissue,China,Shandong,"Mengyin County (various habitats including karst, caves, city sewers, houses)",NA,NA,NA,2015,NA,NA,March,NA,October,1,1,0,1,Yes
"novel coronaviruses, astroviruses, adenoviruses and circoviruses in insectivorous bats from northern china",Han et al.,Zoonoses Public Health,2017,34,6,0.176471,Vespertilionidae,Myotis,Myotis fimbriatus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled tissue,tissue,China,Shandong,"Mengyin County (various habitats including karst, caves, city sewers, houses)",NA,NA,NA,2015,NA,NA,March,NA,October,1,1,0,1,Yes
"novel coronaviruses, astroviruses, adenoviruses and circoviruses in insectivorous bats from northern china",Han et al.,Zoonoses Public Health,2017,10,2,0.2,Vespertilionidae,Myotis,Myotis pilosus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled tissue,tissue,China,Shandong,"Mengyin County (various habitats including karst, caves, city sewers, houses)",NA,NA,NA,2015,NA,NA,March,NA,October,1,1,0,1,Yes
"novel coronaviruses, astroviruses, adenoviruses and circoviruses in insectivorous bats from northern china",Han et al.,Zoonoses Public Health,2017,57,3,0.052632,Vespertilionidae,Myotis,Myotis pequinius,2,betacoronavirus,Merbecovirus,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled tissue,tissue,China,Shandong,"Mengyin County (various habitats including karst, caves, city sewers, houses)",NA,NA,NA,2015,NA,NA,March,NA,October,1,1,0,1,Yes
"novel coronaviruses, astroviruses, adenoviruses and circoviruses in insectivorous bats from northern china",Han et al.,Zoonoses Public Health,2017,4,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled tissue,tissue,China,Shandong,"Mengyin County (various habitats including karst, caves, city sewers, houses)",NA,NA,NA,2015,NA,NA,March,NA,October,1,1,0,1,Yes
"novel coronaviruses, astroviruses, adenoviruses and circoviruses in insectivorous bats from northern china",Han et al.,Zoonoses Public Health,2017,14,1,0.071429,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled tissue,tissue,China,Shandong,"Mengyin County (various habitats including karst, caves, city sewers, houses)",NA,NA,NA,2015,NA,NA,March,NA,October,1,1,0,1,Yes
persistent infections support maintenance of a coronavirus in a population of australian bats (myotis macropus),Jeong et al.,Epidemiol Infect,2017,52,28,0.538462,Vespertilionidae,Myotis,Myotis macropus,1,alphacoronavirus,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Australia,Queensland,lifting holes of a bridge,NA,NA,9,2009,NA,NA,January,NA,March,1,0,0,0,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,101,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,15,0,0,Rhinolophidae,Rhinolophus,Rhinolophus malayanus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,60,0,0,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,41,4,0.097561,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,"Shandong, Anhui, Henan, Sichuan (positives)","11 sites total, 3 sites positive",NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,12,0,0,Rhinolophidae,Rhinolophus,Rhinolophus thomasi,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,66,1,0.015152,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,Sarbecovirus,BtCoV/A1018/06,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Shandong (positive),"16 sites total, 1 site positive",NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,48,1,0.020833,Rhinolophidae,Rhinolophus,Rhinolophus pearsonii,1,alphacoronavirus,NA,BtCoV/970/06,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Shandong (positive),"10 sites total, 1 site positive",NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,38,1,0.026316,Rhinolophidae,Rhinolophus,Rhinolophus macrotis,1,betacoronavirus,Sarbecovirus,BtCoV/279/04,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Hubei (positive),"11 sites total, 1 site positive",NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,2,0,0,Rhinolophidae,Rhinolophus,Rhinolophus rex,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,4,0,0,Rhinolophidae,Rhinolophus,Rhinolophus luctus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus osgoodi,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,58,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,3,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,9,0,0,Hipposideridae,Hipposideros,Hipposideros pratti,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,1,0,0,Hipposideridae,Hipposideros,Hipposideros pomona,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,6,0,0,Hipposideridae,Coelops,Coelops frithii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,7,0,0,Hipposideridae,Aselliscus,Aselliscus stoliczkanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,27,6,0.222222,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,betacoronavirus,Merbecovirus,BtCoV/434/05,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Hainan (positive),"4 sites total, 1 site positive",NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,41,14,0.341463,Vespertilionidae,Pipistrellus,Pipistrellus abramus,1,betacoronavirus,Merbecovirus,BtCoV/355/05,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,"Anhui, Henan, Sichuan (positives)","8 sites total, 3 sites positive",NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,43,5,0.116279,Vespertilionidae,Scotophilus,Scotophilus kuhlii,1,alphacoronavirus,NA,BtCoV/512/05,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Hainan (positive),"2 sites total, 1 site positive",NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,41,0,0,Vespertilionidae,Myotis,Myotis daubentonii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,1,0,0,Vespertilionidae,Myotis,Myotis mystacinus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,53,13,0.245283,Vespertilionidae,Myotis,Myotis pilosus,1,alphacoronavirus,NA,"BtCov/821/05, BtCoV/701/05",pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,"Anhui, Yunnan, Guandong, JiangXi, Guangxi (positives)","8 sites total, 4 sites positive",NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,3,0,0,Vespertilionidae,Myotis,Myotis chinensis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,80,0,0,Vespertilionidae,Myotis,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,6,0,0,Vespertilionidae,Nyctalus,Nyctalus aviator,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,17,0,0,Vespertilionidae,Nyctalus,Nyctalus noctula,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,1,0,0,Vespertilionidae,Scotomanes,Scotomanes ornatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,1,0,0,Vespertilionidae,Barbastella,Barbastella leucomelas,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,14,2,0.142857,Vespertilionidae,Tylonycteris,Tylonycteris pachypus,1,betacoronavirus,Merbecovirus,BtCoV/133/05,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guandong,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,8,0,0,Vespertilionidae,Ia,Ia io,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,5,0,0,Vespertilionidae,Murina,Murina leucogaster,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,135,17,0.125926,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,alphacoronavirus,NA,"BtCoV/A773/05, BtCoV/A911/05",pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,"Fujian, Anhui, Guanxi (positives)","15 sites total, 3 sites positive",NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,6,0,0,Pteropodidae,Cynopterus,Cynopterus sphinx,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
prevalence and genetic diversity of coronaviruses in bats from china,Tang et al.,Journal of Virology,2006,31,0,0,Pteropodidae,Rousettus,Rousettus leschenaultii,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,NA,NA,NA,NA,NA,NA,NA,2004,November,2006,March,1,1,1,1,No
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,24,0,0,Pteropodidae,Cynopterus,Cynopterus sphinx,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,24,0,0,Pteropodidae,Cynopterus,Cynopterus sphinx,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,416,0,0,Pteropodidae,Rousettus,Rousettus leschenaultii,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,350,3,0.008571,Pteropodidae,Rousettus,Rousettus leschenaultii,1,alphacoronavirus,NA,Ro-BatCoV HKU10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Guangdong,"Positive only in 3/350 of bats in Guangdong, 0/66 bats in Hong Kong",NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,66,0,0,Pteropodidae,Rousettus,Rousettus leschenaultii,1,genus not specified,NA,Ro-BatCoV HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,"Positive only in 3/350 of bats in Guangdong, 0/66 bats in Hong Kong",NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,207,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,207,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,2,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,2,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,523,3,0.005736,Hipposideridae,Hipposideros,Hipposideros pomona,1,alphacoronavirus,NA,Hi-BatCoV HKU10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,1,0,0,Hipposideridae,Hipposideros,Hipposideros pomona,1,genus not specified,NA,HKU-10,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,Guangdong,NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,523,37,0.070746,Hipposideridae,Hipposideros,Hipposideros pomona,1,alphacoronavirus,NA,Hi-BatCoV HKU10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,1,0,0,Hipposideridae,Hipposideros,Hipposideros pomona,1,genus not specified,NA,HKU-10,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Guangdong,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,339,0,0,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,339,0,0,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus osgoodi,1,genus not specified,NA,HKU-10,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus osgoodi,1,genus not specified,NA,HKU-10,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,83,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,83,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,1671,0,0,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,1671,0,0,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pulveratus,1,genus not specified,NA,HKU-10,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pulveratus,1,genus not specified,NA,HKU-10,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,14,0,0,Miniopteridae,Miniopterus,Miniopterus magnater,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,14,0,0,Miniopteridae,Miniopterus,Miniopterus magnater,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,380,0,0,Miniopteridae,Miniopterus,Miniopterus pusillus,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,380,0,0,Miniopteridae,Miniopterus,Miniopterus pusillus,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,525,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,525,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,86,0,0,Vespertilionidae,Myotis,Myotis chinensis,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,86,0,0,Vespertilionidae,Myotis,Myotis chinensis,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,7,0,0,Pteropodidae,Cynopterus,Cynopterus horsfieldii,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,7,0,0,Pteropodidae,Cynopterus,Cynopterus horsfieldii,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,3,0,0,Vespertilionidae,Myotis,Myotis muricola,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,3,0,0,Vespertilionidae,Myotis,Myotis muricola,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,175,0,0,Vespertilionidae,Myotis,Myotis pilosus,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,175,0,0,Vespertilionidae,Myotis,Myotis pilosus,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,38,0,0,Vespertilionidae,Nyctalus,Nyctalus noctula,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,38,0,0,Vespertilionidae,Nyctalus,Nyctalus noctula,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,198,0,0,Vespertilionidae,Pipistrellus,Pipistrellus abramus,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,198,0,0,Vespertilionidae,Pipistrellus,Pipistrellus abramus,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,11,0,0,Vespertilionidae,Pipistrellus,Pipistrellus tenuis,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,11,0,0,Vespertilionidae,Pipistrellus,Pipistrellus tenuis,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,16,0,0,Vespertilionidae,Scotophilus,Scotophilus kuhlii,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,16,0,0,Vespertilionidae,Scotophilus,Scotophilus kuhlii,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,75,0,0,Vespertilionidae,Tylonycteris,Tylonycteris pachypus,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,swab,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
"recent transmission of a novel alphacoronavirus, bat coronavirus hku10, from leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders",Lau et al.,J Virol,2012,75,0,0,Vespertilionidae,Tylonycteris,Tylonycteris pachypus,1,genus not specified,NA,HKU-10,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guangdong",NA,NA,NA,NA,NA,NA,2005,September,2010,August,1,1,1,1,Yes
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,3,0,0,Craseonycteridae,Craseonycteris,Craseonycteris thonglongyai,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Khanchanaburi,Cave 27,NA,NA,NA,2008,January,NA,NA,NA,NA,0,0,1,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,5,0,0,Craseonycteridae,Craseonycteris,Craseonycteris thonglongyai,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Khanchanaburi,Cave 28,NA,NA,NA,2008,January,NA,NA,NA,NA,0,0,1,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,7,0,0,Craseonycteridae,Craseonycteris,Craseonycteris thonglongyai,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Khanchanaburi,Cave 27,NA,NA,NA,2008,January,NA,NA,NA,NA,0,0,1,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,6,0,0,Craseonycteridae,Craseonycteris,Craseonycteris thonglongyai,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Khanchanaburi,Cave 28,NA,NA,NA,2008,January,NA,NA,NA,NA,0,0,1,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Hipposideridae,Hipposideros,Hipposideros lekaguli,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Nan,Cave 1,NA,NA,NA,2006,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Hipposideridae,Hipposideros,Hipposideros lekaguli,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Nan,Cave 1,NA,NA,NA,2006,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,4,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Nan,Cave 1,NA,NA,NA,2006,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,3,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Nan,Cave 1,NA,NA,NA,2006,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Nan,Cave 1,NA,NA,NA,2006,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Nan,Cave 1,NA,NA,NA,2006,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,6,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Phayao,Cave 2,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,7,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Phayao,Cave 2,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,3,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Phayao,Cave 2,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Hipposideridae,Aselliscus,Aselliscus stoliczkanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Phayao,Cave 2,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Hipposideridae,Aselliscus,Aselliscus stoliczkanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Phayao,Cave 2,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Hipposideridae,Aselliscus,Aselliscus stoliczkanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Phayao,Cave 2,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Phayao,Cave 2,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Phayao,Cave 2,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Phayao,Cave 2,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Hipposideridae,Hipposideros,Hipposideros lylei,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Phayao,Cave 2,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Hipposideridae,Hipposideros,Hipposideros lylei,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Phayao,Cave 2,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Hipposideridae,Hipposideros,Hipposideros lylei,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Phayao,Cave 2,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,15,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Chiang Rai,Cave 3,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,18,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Chiang Rai,Cave 3,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,5,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Chiang Rai,Cave 3,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Hipposideridae,Aselliscus,Aselliscus stoliczkanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Chiang Rai,Cave 3,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Hipposideridae,Aselliscus,Aselliscus stoliczkanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Chiang Rai,Cave 3,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,17,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Ratchaburi,Cave 4,NA,NA,NA,2006,June,NA,NA,NA,NA,1,0,0,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,7,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Ratchaburi,Cave 4,NA,NA,NA,2006,June,NA,NA,NA,NA,1,0,0,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Ratchaburi,Cave 4,NA,NA,NA,2006,June,NA,NA,NA,NA,1,0,0,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,5,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Uthai Thani,Cave 13,NA,NA,NA,2007,July,NA,NA,NA,NA,1,0,0,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,12,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Ratchaburi,Cave 5,NA,NA,NA,2006,November,NA,NA,NA,NA,0,1,0,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,3,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Ratchaburi,Cave 5,NA,NA,NA,2006,November,NA,NA,NA,NA,0,1,0,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Ratchaburi,Cave 6,NA,NA,NA,2006,November,NA,NA,NA,NA,0,1,0,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Ratchaburi,Cave 6,NA,NA,NA,2006,November,NA,NA,NA,NA,0,1,0,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,9,0,0,Hipposideridae,Hipposideros,Hipposideros lekaguli,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Ratchaburi,Cave 6,NA,NA,NA,2006,November,NA,NA,NA,NA,0,1,0,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Hipposideridae,Hipposideros,Hipposideros lekaguli,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Ratchaburi,Cave 6,NA,NA,NA,2006,November,NA,NA,NA,NA,0,1,0,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Hipposideridae,Hipposideros,Hipposideros lekaguli,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Ratchaburi,Cave 6,NA,NA,NA,2006,November,NA,NA,NA,NA,0,1,0,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,8,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Uthai Thani,Cave 14,NA,NA,NA,2007,May,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Hipposideridae,Hipposideros,Hipposideros pomona,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Uthai Thani,Cave 14,NA,NA,NA,2007,May,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Hipposideridae,Hipposideros,Hipposideros cineraceus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Uthai Thani,Cave 14,NA,NA,NA,2007,May,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,3,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Tak,Cave 15,NA,NA,NA,2007,May,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,5,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Tak,Cave 16,NA,NA,NA,2007,May,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Hipposideridae,Hipposideros,Hipposideros lylei,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Tak,Cave 16,NA,NA,NA,2007,May,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,10,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Ratchaburi,Cave 4,NA,NA,NA,2007,September,NA,NA,NA,NA,0,1,0,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,10,4,0.4,Hipposideridae,Hipposideros,Hipposideros armiger,1,alphacoronavirus,NA,Ha AcOV R,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Ratchaburi,Cave 4,NA,NA,NA,2007,September,NA,NA,NA,NA,0,1,0,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Ratchaburi,Cave 4,NA,NA,NA,2007,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Ratchaburi,Cave 4,NA,NA,NA,2007,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,10,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Chachoengsao,Cave 17,NA,NA,NA,2007,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,10,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Chachoengsao,Cave 17,NA,NA,NA,2007,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,11,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Chachoengsao,Cave 17,NA,NA,NA,2007,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,11,3,0.272727,Hipposideridae,Hipposideros,Hipposideros larvatus,1,betacoronavirus,NA,HI BcoV T,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Chachoengsao,Cave 17,NA,NA,NA,2007,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,3,0,0,Hipposideridae,Hipposideros,Hipposideros pomona,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Nakon Ratchasima,Cave 18,NA,NA,NA,2007,November,NA,NA,NA,NA,0,1,0,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,5,0,0,Hipposideridae,Hipposideros,Hipposideros cineraceus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Khanchanaburi,Cave 24/25,NA,NA,NA,2007,December,NA,NA,NA,NA,0,0,1,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Hipposideridae,Hipposideros,Hipposideros pomona,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Khanchanaburi,Cave 24/25,NA,NA,NA,2007,December,NA,NA,NA,NA,0,0,1,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Hipposideridae,Hipposideros,Hipposideros pomona,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Khanchanaburi,Cave 24/25,NA,NA,NA,2007,December,NA,NA,NA,NA,0,0,1,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Hipposideridae,Hipposideros,Hipposideros halophyllus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Khanchanaburi,Cave 24/25,NA,NA,NA,2007,December,NA,NA,NA,NA,0,0,1,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,4,0,0,Hipposideridae,Hipposideros,Hipposideros halophyllus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Khanchanaburi,Cave 24/25,NA,NA,NA,2007,December,NA,NA,NA,NA,0,0,1,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,40,21,0.525,Hipposideridae,Hipposideros,Hipposideros larvatus,1,betacoronavirus,NA,HI BcoV T,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Chachoengsao,Cave 17,NA,NA,NA,2008,September,NA,NA,NA,NA,0,1,0,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Megadermatidae,Megaderma,Megaderma lyra,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Nan,Cave 1,NA,NA,NA,2006,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Megadermatidae,Megaderma,Megaderma lyra,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Nan,Cave 1,NA,NA,NA,2006,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,5,0,0,Megadermatidae,Megaderma,Megaderma spasma,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Lampang,Cave 12,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,5,0,0,Megadermatidae,Megaderma,Megaderma spasma,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Lampang,Cave 12,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,3,0,0,Megadermatidae,Megaderma,Megaderma spasma,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Lampang,Cave 12,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Pteropodidae,Eonycteris,Eonycteris spelaea,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Tak,Cave 15,NA,NA,NA,2007,May,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,35,0,0,Pteropodidae,Rousettus,Rousettus leschenaultii,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Lopburi,Cave 21,NA,NA,NA,2007,November,NA,NA,NA,NA,0,1,0,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,11,0,0,Pteropodidae,Rousettus,Rousettus leschenaultii,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Lopburi,Cave 21,NA,NA,NA,2007,November,NA,NA,NA,NA,0,1,0,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Pteropodidae,Eonycteris,Eonycteris spelaea,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Nakon Ratchasima,Cave 18,NA,NA,NA,2007,November,NA,NA,NA,NA,0,1,0,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus yunanensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Nan,Cave 7,NA,NA,NA,2006,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,3,0,0,Rhinolophidae,Rhinolophus,Rhinolophus lepidus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Phitsanulok,Cave 8,NA,NA,NA,2006,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Rhinolophidae,Rhinolophus,Rhinolophus lepidus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Phitsanulok,Cave 8,NA,NA,NA,2006,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus malayanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Phayao,Cave 2,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus malayanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Phayao,Cave 2,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus malayanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Phayao,Cave 2,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,3,0,0,Rhinolophidae,Rhinolophus,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Phayao,Cave 2,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Rhinolophidae,Rhinolophus,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Phayao,Cave 2,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Rhinolophidae,Rhinolophus,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Phayao,Cave 2,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus coelophyllus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Uthai Thani,Cave 13,NA,NA,NA,2007,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus thomasi,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Ratchaburi,Cave 5,NA,NA,NA,2006,November,NA,NA,NA,NA,0,1,0,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus thomasi,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Ratchaburi,Cave 5,NA,NA,NA,2006,November,NA,NA,NA,NA,0,1,0,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,6,0,0,Rhinolophidae,Rhinolophus,Rhinolophus coelophyllus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Uthai Thani,Cave 14,NA,NA,NA,2007,May,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus malayanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Uthai Thani,Cave 14,NA,NA,NA,2007,May,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus thomasi,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Uthai Thani,Cave 14,NA,NA,NA,2007,May,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,5,0,0,Rhinolophidae,Rhinolophus,Rhinolophus coelophyllus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Tak,Cave 15,NA,NA,NA,2007,May,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus stheno,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Tak,Cave 15,NA,NA,NA,2007,May,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,5,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pearsonii,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Saraburi,Cave 19,NA,NA,NA,2007,November,NA,NA,NA,NA,0,1,0,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pearsonii,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Lopburi,Cave 20,NA,NA,NA,2007,November,NA,NA,NA,NA,0,1,0,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pearsonii,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Lopburi,Cave 20,NA,NA,NA,2007,November,NA,NA,NA,NA,0,1,0,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus malayanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Khanchanaburi,Cave 23,NA,NA,NA,2007,December,NA,NA,NA,NA,0,0,1,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Rhinolophidae,Rhinolophus,Rhinolophus malayanus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Khanchanaburi,Cave 24/25,NA,NA,NA,2007,December,NA,NA,NA,NA,0,0,1,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus malayanus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Khanchanaburi,Cave 24/25,NA,NA,NA,2007,December,NA,NA,NA,NA,0,0,1,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,25,0,0,Emballonuridae,Taphozous,Taphozous longimanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Lampang,Cave 9,NA,NA,NA,2007,December,NA,NA,NA,NA,0,0,1,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,12,0,0,Emballonuridae,Taphozous,Taphozous longimanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Lampang,Cave 9,NA,NA,NA,2006,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,12,0,0,Emballonuridae,Taphozous,Taphozous longimanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Nan,Cave 10,NA,NA,NA,2006,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,4,0,0,Emballonuridae,Taphozous,Taphozous longimanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Nan,Cave 10,NA,NA,NA,2006,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,9,0,0,Emballonuridae,Taphozous,Taphozous longimanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Nan,Cave 7,NA,NA,NA,2006,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Emballonuridae,Taphozous,Taphozous longimanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Nan,Cave 7,NA,NA,NA,2006,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,22,0,0,Emballonuridae,Taphozous,Taphozous longimanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Phayao,Cave 2,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,5,0,0,Emballonuridae,Taphozous,Taphozous longimanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Chiang Rai,Cave 11,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,5,0,0,Emballonuridae,Taphozous,Taphozous longimanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Chiang Rai,Cave 11,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Emballonuridae,Taphozous,Taphozous longimanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Chiang Rai,Cave 11,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,3,0,0,Emballonuridae,Taphozous,Taphozous longimanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Phayao,Cave 2,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,3,0,0,Emballonuridae,Taphozous,Taphozous longimanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Phayao,Cave 2,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Emballonuridae,Taphozous,Taphozous longimanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Chachoengsao,Cave 22,NA,NA,NA,2007,December,NA,NA,NA,NA,0,0,1,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Emballonuridae,Taphozous,Taphozous longimanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Chachoengsao,Cave 22,NA,NA,NA,2007,December,NA,NA,NA,NA,0,0,1,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,4,0,0,Emballonuridae,Taphozous,Taphozous longimanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Chachoengsao,Cave 17,NA,NA,NA,2007,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,4,0,0,Emballonuridae,Taphozous,Taphozous longimanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Chachoengsao,Cave 17,NA,NA,NA,2007,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,4,0,0,Emballonuridae,Taphozous,Taphozous longimanus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Chachoengsao,Cave 17,NA,NA,NA,2007,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Vespertilionidae,Myotis,Myotis siligorensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Nan,Cave 7,NA,NA,NA,2006,March,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Vespertilionidae,Myotis,Myotis siligorensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Phayao,Cave 2,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,4,0,0,Vespertilionidae,Myotis,Myotis siligorensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Ratchaburi,Cave 5,NA,NA,NA,2006,November,NA,NA,NA,NA,0,1,0,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Vespertilionidae,Myotis,Myotis siligorensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Chiang Rai,Cave 3,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Vespertilionidae,Myotis,Myotis siligorensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Chiang Rai,Cave 3,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,1,0,0,Vespertilionidae,Myotis,Myotis siligorensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Khanchanaburi,Cave 26,NA,NA,NA,2008,January,NA,NA,NA,NA,0,0,1,0,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Thailand,Chiang Rai,Cave 3,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Thailand,Chiang Rai,Cave 3,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-coronavirus ancestor's foot-prints in south-east asian bat colonies and the refuge theory,Ar Gouilh et al.,Infect Genet Evol,2011,2,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,urinary,tissue,Thailand,Chiang Rai,Cave 3,NA,NA,NA,2006,April,NA,NA,NA,NA,0,0,0,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,12,1,0.083333,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Laissac, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Lagarde, Averyon",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Dions, Gard",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,9,1,0.111111,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,Sant Llorenc Savall,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,Olesa de Bonesvalls,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,6,1,0.166667,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,"Inca, Majorque",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,8,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,Malgrat de Mar,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,2,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,Les,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,1,1,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,Os de Balaguer,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,"Palma, Majorque",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,7,0,0,Miniopteridae,Miniopterus,Miniopterus maghrebensis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Morocco,Ifri'N Caid,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,8,1,0.125,Molossidae,Tadarida,Tadarida teniotis,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,"San Pedro, Oliete",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,3,1,0.333333,Rhinolophidae,Rhinolophus,Rhinolophus euryale,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Morocco,Ifri'N Caid,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,7,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Laissac, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,2,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Lapanouse, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,161,61,0.378882,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,Sarbecovirus,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Cantoin, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,2,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Pantchateau, Loire-Atlantique",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,3,1,0.333333,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Batere, Pyrenees-Orientales",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,2,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Pluherlin, Morbihan, Bretagne",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,705,90,0.12766,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,Sarbecovirus,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Plovan, Finistere, Bretagne",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,2,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Morocco,Ifri'N Caid,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,4,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,"Inca, Majorque",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,48,8,0.166667,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,betacoronavirus,Sarbecovirus,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,Rocafort,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,2,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,"Ferreries, Minorque",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,1,1,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,"Llucmajor, Majorque",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,8,0,0,Rhinolophidae,Rhinolophus,Rhinolophus hipposideros,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Laissac, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus hipposideros,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Lagarde, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,3,0,0,Rhinolophidae,Rhinolophus,Rhinolophus hipposideros,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Lapanouse, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Vespertilionidae,Barbastella,Barbastella barbastellus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Pluherin, Morbihan, Bretagne",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,2,1,0.5,Vespertilionidae,Eptesicus,Eptesicus serotinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Dions, Gard",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,2,0,0,Vespertilionidae,Eptesicus,Eptesicus serotinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Lacalm, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Vespertilionidae,Eptesicus,Eptesicus serotinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,Senet,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,2,0,0,Vespertilionidae,Eptesicus,Eptesicus isabellinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Tunisia,Zaghouan,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus savii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,Oliete,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Vespertilionidae,Myotis,Myotis alcathoe,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Lagarde, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Vespertilionidae,Myotis,Myotis alcathoe,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Batere, Pyrenees-Orientales",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,2,0,0,Vespertilionidae,Myotis,Myotis bechsteinii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Laissac, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,9,0,0,Vespertilionidae,Myotis,Myotis bechsteinii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Pontchateau, Loire-Atlantique",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,2,0,0,Vespertilionidae,Myotis,Myotis blythii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Batere, Pyrenees-Orientales",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Vespertilionidae,Myotis,Myotis blythii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,Creissels,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,4,0,0,Vespertilionidae,Myotis,Myotis blythii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,Les,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Vespertilionidae,Myotis,Myotis blythii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,Os de Balaguer,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,6,0,0,Vespertilionidae,Myotis,Myotis capaccinii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Dions, Gard",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Vespertilionidae,Myotis,Myotis capaccinii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Cantoin, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,6,6,1,Vespertilionidae,Myotis,Myotis capaccinii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,"Llucmajor, Majorque",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Vespertilionidae,Myotis,Myotis capaccinii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,Olesa de Bonesvalls,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,1,1,Vespertilionidae,Myotis,Myotis capaccinii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,Llimiana,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,6,2,0.333333,Vespertilionidae,Myotis,Myotis daubentonii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Lagarde, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,4,0,0,Vespertilionidae,Myotis,Myotis daubentonii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Dions, Gard",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,20,1,0.05,Vespertilionidae,Myotis,Myotis daubentonii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Pontchateau, Loire-Atlantique",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Vespertilionidae,Myotis,Myotis daubentonii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Cruejouls, Auvergne",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,2,0,0,Vespertilionidae,Myotis,Myotis daubentonii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,Les,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,7,0,0,Vespertilionidae,Myotis,Myotis emarginatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Laissac, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,4,0,0,Vespertilionidae,Myotis,Myotis emarginatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Lagarde, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,5,0,0,Vespertilionidae,Myotis,Myotis emarginatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Pontchateau, Loire-Atlantique",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Vespertilionidae,Myotis,Myotis emarginatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Pluherlin, Morbihan, Bretagne",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,2,0,0,Vespertilionidae,Myotis,Myotis emarginatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Brenac, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,8,0,0,Vespertilionidae,Myotis,Myotis escalerai,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,"Inca, Majorque",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,2,0,0,Vespertilionidae,Myotis,Myotis escalerai,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,"Orpi, Majorque",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,3,0,0,Vespertilionidae,Myotis,Myotis escalerai,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Batere, Pyrenees-Orientales",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,2,0,0,Vespertilionidae,Myotis,Myotis escalerai,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,"Santa Maria de Miralles, Vilafranca",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,3,0,0,Vespertilionidae,Myotis,Myotis myotis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Dions, Gard",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,88,8,0.090909,Vespertilionidae,Myotis,Myotis myotis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,"Inca, Majorque",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,7,4,0.571429,Vespertilionidae,Myotis,Myotis myotis,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,Malgrat de Mar,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,1,1,Vespertilionidae,Myotis,Myotis myotis,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,Les,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,18,0,0,Vespertilionidae,Myotis,Myotis myotis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Pontchateau, Loire-Atlantique",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,2,2,1,Vespertilionidae,Myotis,Myotis myotis,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,Os de Balageur,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,3,0,0,Vespertilionidae,Myotis,Myotis myotis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Creissels, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,17,0,0,Vespertilionidae,Myotis,Myotis myotis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"La Roche Bernard, Morbihan",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,89,12,0.134831,Vespertilionidae,Myotis,Myotis myotis,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,"Llucmajor, Majorque",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Vespertilionidae,Myotis,Myotis myotis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,Llimiana,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,3,0,0,Vespertilionidae,Myotis,Myotis mystacinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Pontchateau, Bretagne",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Vespertilionidae,Myotis,Myotis mystacinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Brenac, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,34,3,0.088235,Vespertilionidae,Myotis,Myotis nattereri,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Pontchateau, Bretagne",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,5,0,0,Vespertilionidae,Myotis,Myotis nattereri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Laissac, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,2,0,0,Vespertilionidae,Myotis,Myotis nattereri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Lagarde, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Vespertilionidae,Myotis,Myotis nattereri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Lapanouse, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,2,0,0,Vespertilionidae,Myotis,Myotis nattereri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Cruejouls, Auvergne",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Vespertilionidae,Myotis,Myotis nattereri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Biounac, Aveyeron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,3,0,0,Vespertilionidae,Myotis,Myotis punicus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Morocco,Ifri'N Caid,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,1,1,Vespertilionidae,Myotis,Myotis punicus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Tunisia,Zaghouan,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,7,2,0.285714,Vespertilionidae,Myotis,Myotis punicus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Tunisia,Zaghouan,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Vespertilionidae,Nyctalus,Nyctalus leisleri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,Sant Llorenc Savall,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,3,0,0,Vespertilionidae,Nyctalus,Nyctalus leisleri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,Senet,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,3,0,0,Vespertilionidae,Pipistrellus,Pipistrellus kuhlii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,Oliete,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,2,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Dions, Gard",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,9,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Brenac, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Biounac, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,3,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Quimper, Finistere, Bretagne",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,6,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Orlhaguet, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Ste-Geneviere/Argence, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,Oliete,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pygmaeus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Brenac, Aveyron",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,1,0,0,Vespertilionidae,Plecotus,Plecotus austriacus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,France,"Dions, Gard",NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
sars-cov related betacoronavirus and diverse alphacoronavirus members found in western old-world,Ar Gouilh et al.,Virology,2018,2,0,0,Vespertilionidae,Plecotus,Plecotus austriacus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,hemi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,Oliete,NA,NA,NA,NA,NA,NA,2008,NA,2016,NA,1,1,1,1,No
"seasonal fluctuations of astrovirus, but not coronavirus shedding in bats inhabiting human-modified tropical forests",Seltmann et al.,Ecohealth,2017,43,7,0.162791,Hipposideridae,Hipposideros,Hipposideros cervinus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Malaysian Borneo,Sabah,Recovering forest,NA,NA,NA,NA,NA,2014,March,2015,September,1,1,0,1,No
"seasonal fluctuations of astrovirus, but not coronavirus shedding in bats inhabiting human-modified tropical forests",Seltmann et al.,Ecohealth,2017,25,9,0.36,Hipposideridae,Hipposideros,Hipposideros cervinus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Malaysian Borneo,Sabah,Actively logged forest,NA,NA,NA,NA,NA,2014,March,2015,September,1,1,0,1,No
"seasonal fluctuations of astrovirus, but not coronavirus shedding in bats inhabiting human-modified tropical forests",Seltmann et al.,Ecohealth,2017,8,0,0,Hipposideridae,Hipposideros,Hipposideros cervinus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Malaysian Borneo,Sabah,Fragmented forest,NA,NA,NA,NA,NA,2014,March,2015,September,1,1,0,1,No
"seasonal fluctuations of astrovirus, but not coronavirus shedding in bats inhabiting human-modified tropical forests",Seltmann et al.,Ecohealth,2017,3,0,0,Hipposideridae,Hipposideros,Hipposideros dyacorum,1,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Malaysian Borneo,Sabah,Recovering forest,NA,NA,NA,NA,NA,2014,March,2015,September,1,1,0,1,No
"seasonal fluctuations of astrovirus, but not coronavirus shedding in bats inhabiting human-modified tropical forests",Seltmann et al.,Ecohealth,2017,8,0,0,Hipposideridae,Hipposideros,Hipposideros dyacorum,1,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Malaysian Borneo,Sabah,Actively logged forest,NA,NA,NA,NA,NA,2014,March,2015,September,1,1,0,1,No
"seasonal fluctuations of astrovirus, but not coronavirus shedding in bats inhabiting human-modified tropical forests",Seltmann et al.,Ecohealth,2017,23,0,0,Hipposideridae,Hipposideros,Hipposideros dyacorum,1,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Malaysian Borneo,Sabah,Fragmented forest,NA,NA,NA,NA,NA,2014,March,2015,September,1,1,0,1,No
"seasonal fluctuations of astrovirus, but not coronavirus shedding in bats inhabiting human-modified tropical forests",Seltmann et al.,Ecohealth,2017,51,0,0,Rhinopomatidae,Rhinopoma,Rhinopoma hardwickii,1,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Malaysian Borneo,Sabah,Recovering forest,NA,NA,NA,NA,NA,2014,March,2015,September,1,1,0,1,No
"seasonal fluctuations of astrovirus, but not coronavirus shedding in bats inhabiting human-modified tropical forests",Seltmann et al.,Ecohealth,2017,12,0,0,Rhinopomatidae,Rhinopoma,Rhinopoma hardwickii,1,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Malaysian Borneo,Sabah,Actively logged forest,NA,NA,NA,NA,NA,2014,March,2015,September,1,1,0,1,No
"seasonal fluctuations of astrovirus, but not coronavirus shedding in bats inhabiting human-modified tropical forests",Seltmann et al.,Ecohealth,2017,9,0,0,Rhinopomatidae,Rhinopoma,Rhinopoma hardwickii,1,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Malaysian Borneo,Sabah,Fragmented forest,NA,NA,NA,NA,NA,2014,March,2015,September,1,1,0,1,No
"seasonal fluctuations of astrovirus, but not coronavirus shedding in bats inhabiting human-modified tropical forests",Seltmann et al.,Ecohealth,2017,44,0,0,Vespertilionidae,Kerivoula,Kerivoula intermedia,1,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Malaysian Borneo,Sabah,Recovering forest,NA,NA,NA,NA,NA,2014,March,2015,September,1,1,0,1,No
"seasonal fluctuations of astrovirus, but not coronavirus shedding in bats inhabiting human-modified tropical forests",Seltmann et al.,Ecohealth,2017,23,0,0,Vespertilionidae,Kerivoula,Kerivoula intermedia,1,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Malaysian Borneo,Sabah,Actively logged forest,NA,NA,NA,NA,NA,2014,March,2015,September,1,1,0,1,No
"seasonal fluctuations of astrovirus, but not coronavirus shedding in bats inhabiting human-modified tropical forests",Seltmann et al.,Ecohealth,2017,22,0,0,Vespertilionidae,Kerivoula,Kerivoula intermedia,1,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Malaysian Borneo,Sabah,Fragmented forest,NA,NA,NA,NA,NA,2014,March,2015,September,1,1,0,1,No
"seasonal fluctuations of astrovirus, but not coronavirus shedding in bats inhabiting human-modified tropical forests",Seltmann et al.,Ecohealth,2017,7,0,0,Vespertilionidae,Kerivoula,Kerivoula papillosa,1,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Malaysian Borneo,Sabah,Recovering forest,NA,NA,NA,NA,NA,2014,March,2015,September,1,1,0,1,No
"seasonal fluctuations of astrovirus, but not coronavirus shedding in bats inhabiting human-modified tropical forests",Seltmann et al.,Ecohealth,2017,1,0,0,Vespertilionidae,Kerivoula,Kerivoula papillosa,1,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Malaysian Borneo,Sabah,Actively logged forest,NA,NA,NA,NA,NA,2014,March,2015,September,1,1,0,1,No
"seasonal fluctuations of astrovirus, but not coronavirus shedding in bats inhabiting human-modified tropical forests",Seltmann et al.,Ecohealth,2017,2,0,0,Vespertilionidae,Kerivoula,Kerivoula papillosa,1,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Malaysian Borneo,Sabah,Fragmented forest,NA,NA,NA,NA,NA,2014,March,2015,September,1,1,0,1,No
"seasonal fluctuations of astrovirus, but not coronavirus shedding in bats inhabiting human-modified tropical forests",Seltmann et al.,Ecohealth,2017,6,0,0,Rhinolophidae,Rhinolophus,Rhinolophus borneensis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Malaysian Borneo,Sabah,Recovering forest,NA,NA,NA,NA,NA,2014,March,2015,September,1,1,0,1,No
"seasonal fluctuations of astrovirus, but not coronavirus shedding in bats inhabiting human-modified tropical forests",Seltmann et al.,Ecohealth,2017,7,0,0,Rhinolophidae,Rhinolophus,Rhinolophus borneensis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Malaysian Borneo,Sabah,Actively logged forest,NA,NA,NA,NA,NA,2014,March,2015,September,1,1,0,1,No
"seasonal fluctuations of astrovirus, but not coronavirus shedding in bats inhabiting human-modified tropical forests",Seltmann et al.,Ecohealth,2017,7,0,0,Rhinolophidae,Rhinolophus,Rhinolophus borneensis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Malaysian Borneo,Sabah,Fragmented forest,NA,NA,NA,NA,NA,2014,March,2015,September,1,1,0,1,No
"seasonal fluctuations of astrovirus, but not coronavirus shedding in bats inhabiting human-modified tropical forests",Seltmann et al.,Ecohealth,2017,13,0,0,Rhinolophidae,Rhinolophus,Rhinolophus sedulus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Malaysian Borneo,Sabah,Recovering forest,NA,NA,NA,NA,NA,2014,March,2015,September,1,1,0,1,No
"seasonal fluctuations of astrovirus, but not coronavirus shedding in bats inhabiting human-modified tropical forests",Seltmann et al.,Ecohealth,2017,5,0,0,Rhinolophidae,Rhinolophus,Rhinolophus sedulus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Malaysian Borneo,Sabah,Actively logged forest,NA,NA,NA,NA,NA,2014,March,2015,September,1,1,0,1,No
"seasonal fluctuations of astrovirus, but not coronavirus shedding in bats inhabiting human-modified tropical forests",Seltmann et al.,Ecohealth,2017,19,1,0.052632,Rhinolophidae,Rhinolophus,Rhinolophus trifoliatus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Malaysian Borneo,Sabah,Recovering forest,NA,NA,NA,NA,NA,2014,March,2015,September,1,1,0,1,No
"seasonal fluctuations of astrovirus, but not coronavirus shedding in bats inhabiting human-modified tropical forests",Seltmann et al.,Ecohealth,2017,17,0,0,Rhinolophidae,Rhinolophus,Rhinolophus trifoliatus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Malaysian Borneo,Sabah,Actively logged forest,NA,NA,NA,NA,NA,2014,March,2015,September,1,1,0,1,No
"seasonal fluctuations of astrovirus, but not coronavirus shedding in bats inhabiting human-modified tropical forests",Seltmann et al.,Ecohealth,2017,10,0,0,Rhinolophidae,Rhinolophus,Rhinolophus trifoliatus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Malaysian Borneo,Sabah,Fragmented forest,NA,NA,NA,NA,NA,2014,March,2015,September,1,1,0,1,No
severe acute respiratory syndrome coronavirus-like virus in chinese horseshoe bats,Lau et al.,Proceedings of The National Academy of Sciences of The United States of America,2005,59,23,0.389831,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,Sarbecovirus,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Hong Kong,11 sites,NA,NA,NA,NA,NA,2004,NA,2005,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,6,0,0,Molossidae,Chaerephon,Chaerephon plicatus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,Yangshan,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,5,0,0,Molossidae,Tadarida,NA,NA,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,Yingde,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,39,0,0,Pteropodidae,Cynopterus,Cynopterus sphinx,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangxi Zhuang and Guangdong,"Beihai (Guangxi Zhuang), Baiyun (Guangdong)",NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,107,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,"Yingde, Ruyuan, Shenzhen, Yangshan",NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,28,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,"Yingde, Ruyuan, Yangshan",NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,18,0,0,Hipposideridae,Hipposideros,Hipposideros pomona,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,Shenzhen,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,55,0,0,Hipposideridae,Hipposideros,Hipposideros pratti,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,"Ruyuan, Yangshan",NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,3,0,0,Rhinolophidae,Rhinolophus,Rhinolophus luctus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,Ruyuan,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,3,0,0,Rhinolophidae,Rhinolophus,Rhinolophus macrotis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,Ruyuan,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,25,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pearsonii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,"Lechang, Ruyuan, Yangshan",NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,15,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,"Ruyuan, Yangshan",NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,8,0,0,Rhinolophidae,Rhinolophus,Rhinolophus rex,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,Ruyuan,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,73,0,0,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,"Lechang, Yingde, Ruyuan, Shenzhen, Yangshan",NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,1,0,0,Vespertilionidae,Eptesicus,NA,NA,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,Baiyun,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,53,4,0.075472,Vespertilionidae,Ia,Ia io,1,betacoronavirus,Merbecovirus,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,"Yingde, Ruyuan, Yangshan",NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,1,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,Yingde,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,9,0,0,Vespertilionidae,Myotis,Myotis adversus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,"Huadu, Shenzhen",NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,2,0,0,Vespertilionidae,Myotis,Myotis altarium,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,"Ruyuan, Yangshan",NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,21,0,0,Vespertilionidae,Myotis,Myotis chinensis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,"Yingde, Ruyuan, Shenzhen",NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,57,0,0,Vespertilionidae,Myotis,Myotis daubentonii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,"Xuwen, Baiyun, Ruyuan, Yangshan",NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,17,0,0,Vespertilionidae,Myotis,Myotis longipes,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,"Ruyuan, Yangshan",NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,47,0,0,Vespertilionidae,Myotis,Myotis pilosus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,"Yingde, Ruyuan",NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,18,0,0,Vespertilionidae,Myotis,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,"Yingde, Ruyuan",NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,1,0,0,Vespertilionidae,Nyctalus,Nyctalus plancyi,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,Yingde,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,75,15,0.2,Vespertilionidae,Pipistrellus,Pipistrellus abramus,1,betacoronavirus,Merbecovirus,HKU5,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,"Xuwen, Yingde, Huadu, Baiyun, Ruyuan, Shenzhen, Yangshan",NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,7,1,0.142857,Vespertilionidae,Pipistrellus,Pipistrellus tenuis,1,betacoronavirus,Merbecovirus,HKU5,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,"Yingde, Baiyun, Yangshan",NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,42,6,0.142857,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,betacoronavirus,Merbecovirus,HKU5,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,"Xuwen, Yingde, Ruyuan, Shenzhen, Yangshan",NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,21,4,0.190476,Vespertilionidae,Pipistrellus,NA,NA,betacoronavirus,Merbecovirus,HKU5,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,"Yingde, Ruyuan",NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,3,0,0,Vespertilionidae,Scotomanes,Scotomanes ornatus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,Yingde,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,3,0,0,Vespertilionidae,Scotophilus,Scotophilus kuhlii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,"Yingde, Shenzhen",NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,70,11,0.157143,Vespertilionidae,Tylonycteris,Tylonycteris pachypus,1,betacoronavirus,Merbecovirus,HKU4,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guanxi Zhuang,Chongzuo,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,45,13,0.288889,Vespertilionidae,Tylonycteris,NA,NA,betacoronavirus,Merbecovirus,HKU4,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,"Yingde, Baiyun, Shenzhen",NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,3,0,0,Vespertilionidae,Vespertilio,Vespertilio murinus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Guangdong,Yangshan,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
discovery of novel bat coronaviruses in south china that use the same receptor as middle east respiratory syndrome coronavirus,Luo et al.,J Virol,2018,159,34,0.213836,Vespertilionidae,Vespertilio,Vespertilio sinensis,1,betacoronavirus,Merbecovirus,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Sichuan,Zigong,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,No
distribution of bat-borne viruses and environment patterns,Afelt et al.,Infection Genetics and Evolution,2018,5,1,0.2,Vespertilionidae,Scotophilus,NA,NA,alphacoronavirus,subcluster 1,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Cambodia,NA,NA,NA,NA,2,NA,NA,2013,January,2013,February,0,0,1,0,Yes
distribution of bat-borne viruses and environment patterns,Afelt et al.,Infection Genetics and Evolution,2018,43,4,0.093023,Pteropodidae,Cynopterus,NA,NA,betacoronavirus,Nobecovirus,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Cambodia,NA,NA,NA,NA,NA,2012,September,NA,NA,NA,NA,0,1,0,0,Yes
distribution of bat-borne viruses and environment patterns,Afelt et al.,Infection Genetics and Evolution,2018,1,0,0,Rhinolophidae,Rhinolophus,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Cambodia,NA,NA,NA,NA,NA,2010,December,NA,NA,NA,NA,0,0,1,0,Yes
distribution of bat-borne viruses and environment patterns,Afelt et al.,Infection Genetics and Evolution,2018,39,0,0,Pteropodidae,Cynopterus,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Cambodia,NA,NA,NA,NA,NA,2012,September,NA,NA,NA,NA,0,1,0,0,Yes
distribution of bat-borne viruses and environment patterns,Afelt et al.,Infection Genetics and Evolution,2018,9,1,0.111111,Vespertilionidae,Pipistrellus,NA,NA,alphacoronavirus,subcluster 1,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Cambodia,NA,NA,NA,NA,NA,NA,NA,2011,May,2013,February,1,1,1,1,Yes
distribution of bat-borne viruses and environment patterns,Afelt et al.,Infection Genetics and Evolution,2018,20,1,0.05,Vespertilionidae,Pipistrellus,NA,NA,betacoronavirus,Merbecovirus,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Cambodia,NA,NA,NA,NA,NA,NA,NA,2011,May,2013,February,1,1,1,1,Yes
distribution of bat-borne viruses and environment patterns,Afelt et al.,Infection Genetics and Evolution,2018,50,2,0.04,Vespertilionidae,Myotis,NA,NA,alphacoronavirus,subcluster 2,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Cambodia,NA,NA,NA,NA,NA,2011,June,NA,NA,NA,NA,1,0,0,0,Yes
distribution of bat-borne viruses and environment patterns,Afelt et al.,Infection Genetics and Evolution,2018,6,0,0,Vespertilionidae,Scotophilus,NA,NA,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Cambodia,NA,NA,NA,NA,5,NA,NA,2011,May,2011,November,1,1,1,1,Yes
distribution of bat-borne viruses and environment patterns,Afelt et al.,Infection Genetics and Evolution,2018,3,0,0,Pteropodidae,Megaerops,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Lao PDR,NA,NA,NA,NA,NA,2013,February,NA,NA,NA,NA,0,0,0,1,Yes
distribution of bat-borne viruses and environment patterns,Afelt et al.,Infection Genetics and Evolution,2018,2,0,0,Pteropodidae,Cynopterus,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Lao PDR,NA,NA,NA,NA,NA,2012,December,NA,NA,NA,NA,0,0,1,0,Yes
distribution of bat-borne viruses and environment patterns,Afelt et al.,Infection Genetics and Evolution,2018,32,0,0,Vespertilionidae,Ia,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Lao PDR,NA,NA,NA,NA,NA,2012,November,NA,NA,NA,NA,0,1,0,0,Yes
distribution of bat-borne viruses and environment patterns,Afelt et al.,Infection Genetics and Evolution,2018,3,0,0,Hipposideridae,Hipposideros,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Lao PDR,NA,NA,NA,NA,NA,2013,March,NA,NA,NA,NA,0,0,0,1,Yes
distribution of bat-borne viruses and environment patterns,Afelt et al.,Infection Genetics and Evolution,2018,9,0,0,Pteropodidae,Rousettus,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Lao PDR,NA,NA,NA,NA,NA,2011,February,NA,NA,NA,NA,0,0,1,0,Yes
distribution of bat-borne viruses and environment patterns,Afelt et al.,Infection Genetics and Evolution,2018,10,0,0,Pteropodidae,Rousettus,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Lao PDR,NA,NA,NA,NA,NA,2013,December,NA,NA,NA,NA,0,0,1,0,Yes
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,6,1,0.166667,Pteropodidae,Cynopterus,Cynopterus brachyotis,1,alphacoronavirus,NA,HKU10,single,cross-sectional,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,Chataburi,Ang Aed,NA,NA,NA,2011,NA,NA,NA,NA,NA,0,0,1,0,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,3,0,0,Pteropodidae,Cynopterus,Cynopterus brachyotis,1,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,Trat,NA,NA,NA,NA,2011,NA,NA,NA,NA,NA,0,0,1,0,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,7,4,0.571429,Pteropodidae,Cynopterus,Cynopterus sphinx,1,betacoronavirus,Nobecovirus,"HKU9 (2), ? (2)",single,cross-sectional,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,Chonburi,NA,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,7,0,0,Pteropodidae,Cynopterus,Cynopterus sphinx,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,"Chataburi (2011), Chachonsao (2008), Trat (2011)","Ang Aed (2011), Rad (2008), Trat (2011)",NA,NA,3,NA,NA,2008,NA,2011,NA,1,0,1,1,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,11,0,0,Pteropodidae,Eonycteris,Eonycteris spelaea,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,"Chataburi (2011), Trat (2011), Chonburi (2012)","Ang Aed (2011), Trat (2011), Chonburi (2012)",NA,NA,3,NA,NA,2011,NA,2012,NA,1,1,1,1,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,3,0,0,Pteropodidae,Rousettus,Rousettus amplexicaudatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,Chantaburi,Sarika,NA,NA,NA,2011,NA,NA,NA,NA,NA,0,0,1,1,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,12,0,0,Emballonuridae,Taphozous,Taphozous longimanus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,Chachongsao,Rad,NA,NA,2,NA,NA,2008,NA,2012,NA,1,0,1,1,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,79,1,0.012658,Emballonuridae,Taphozous,Taphozous melanopogon,1,alphacoronavirus,NA,HKU7,single,cross-sectional,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,Chachongsao,Rad,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,0,1,1,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,40,1,0.025,Emballonuridae,Taphozous,Taphozous melanopogon,1,alphacoronavirus,NA,HKU10,single,cross-sectional,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,Chantaburi,Sarika,NA,NA,NA,2011,NA,NA,NA,NA,NA,0,0,1,1,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,4,0,0,Emballonuridae,Taphozous,Taphozous melanopogon,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,"Chachongsao (2013), Srakaew (2012), Chantaburi (2012)","Rad (2013), Chakan (2012), Sarika (2012)",NA,NA,3,NA,NA,NA,NA,NA,NA,1,0,1,1,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,121,2,0.016529,Hipposideridae,Hipposideros,Hipposideros armiger,1,alphacoronavirus,NA,"CoV1A/B (1), HKU10 (1)",single,cross-sectional,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,Chachongsao,Rad,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,0,1,1,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,19,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,"Chachongsao (2008, 2013), Srakaew (2012), Chantaburi (2012)","Rad (2008, 2013), Chakan (2012), Sarika (2012)",NA,NA,4,NA,NA,2008,NA,2013,NA,1,0,1,1,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,3,0,0,Hipposideridae,Hipposideros,Hipposideros cineraceus,1,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,Srakaew,Chakan,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,0,1,1,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,20,1,0.05,Hipposideridae,Hipposideros,Hipposideros larvatus,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,Chachongsao,Rad,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,0,1,1,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,9,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,"Chachongsao (2008, 2012), Srakaew (2012)","Rad (2008, 2012), Chakan (2012)",NA,NA,3,NA,NA,2008,NA,2012,NA,1,0,1,1,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,159,8,0.050314,Hipposideridae,Hipposideros,Hipposideros lekaguli,1,alphacoronavirus,NA,"CoV1A/B (2), HKU10 (6)",pooled,longitudinal,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,Srakaew,Chakan,NA,NA,2,NA,NA,2008,NA,2012,NA,1,0,1,1,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,159,2,0.012579,Hipposideridae,Hipposideros,Hipposideros lekaguli,1,betacoronavirus,Nobecovirus,NA,pooled,longitudinal,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,Srakaew,Chakan,NA,NA,2,NA,NA,2008,NA,2012,NA,1,0,1,1,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,2,0,0,Pteropodidae,Macroglossus,Macroglossus sobrinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,"Chataburi, Trat","Ang Aed, Trat",NA,NA,NA,2011,NA,NA,NA,NA,NA,0,0,1,0,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,2,1,0.5,Megadermatidae,Megaderma,Megaderma lyra,1,alphacoronavirus,NA,HKU10,single,cross-sectional,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,Chachongsao,Rad,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,0,1,1,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,20,2,0.1,Rhinolophidae,Rhinolophus,Rhinolophus shameli,1,alphacoronavirus,NA,"HKU10 (1), HKU2 (1)",single,cross-sectional,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,Srakaew,Chakan,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,0,1,1,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,30,6,0.2,Miniopteridae,Miniopterus,Miniopterus magnater,1,alphacoronavirus,NA,"CoV1A/B (5), HKU7 (1)",single,cross-sectional,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,Srakaew,Chakan,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,0,1,1,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,1,1,1,Miniopteridae,Miniopterus,Miniopterus pusillus,1,alphacoronavirus,NA,HKU8,single,cross-sectional,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,Srakaew,Chakan,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,0,1,1,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,53,12,0.226415,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,alphacoronavirus,NA,"Cov1A/B (3), HKU7 (1), HKU8 (8)",single,cross-sectional,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,Srakaew,Chakan,NA,NA,NA,2008,NA,NA,NA,NA,NA,1,0,1,1,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,4,0,0,Vespertilionidae,Myotis,Myotis horsfieldii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,"Srakaew, Chonburi","Chakan, Chonburi",NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,3,2,0.666667,Vespertilionidae,Scotophilus,Scotophilus kuhlii,1,betacoronavirus,Nobecovirus,NA,single,cross-sectional,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,Chonburi,NA,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,8,2,0.25,Vespertilionidae,Scotophilus,Scotophilus heathii,1,alphacoronavirus,NA,CoV 512,single,cross-sectional,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,Chonburi,NA,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,No
diversity of coronavirus in bats from eastern thailand,Wacharapluesadee et al.,Virology Journal,2015,8,1,0.125,Vespertilionidae,Scotophilus,Scotophilus heathii,1,betacoronavirus,Nobecovirus,NA,single,cross-sectional,PCR,broadly reactive heminested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",pooled,Thailand,Chonburi,NA,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,No
"ecoepidemiology and complete genome comparison of different strains of severe acute respiratory syndrome-related rhinolophus bat coronavirus in china reveal bats as a reservoir for acute, self-limiting infection that allows recombination events",Lau et al.,J Virol,2010,1337,2,0.001496,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,Sarbecovirus,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2004,April,2008,March,1,1,1,1,Yes
"ecoepidemiology and complete genome comparison of different strains of severe acute respiratory syndrome-related rhinolophus bat coronavirus in china reveal bats as a reservoir for acute, self-limiting infection that allows recombination events",Lau et al.,J Virol,2010,1337,126,0.094241,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,Sarbecovirus,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2004,April,2008,March,1,1,1,1,Yes
"ecoepidemiology and complete genome comparison of different strains of severe acute respiratory syndrome-related rhinolophus bat coronavirus in china reveal bats as a reservoir for acute, self-limiting infection that allows recombination events",Lau et al.,J Virol,2010,64,4,0.0625,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,Sarbecovirus,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Guangdong,NA,NA,NA,NA,NA,NA,2004,April,2008,March,1,1,1,1,Yes
"ecoepidemiology and complete genome comparison of different strains of severe acute respiratory syndrome-related rhinolophus bat coronavirus in china reveal bats as a reservoir for acute, self-limiting infection that allows recombination events",Lau et al.,J Virol,2010,1337,62,0.046372,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,alphacoronavirus,NA,Rh-BatCoV HKU2,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2004,April,2008,March,1,1,1,1,Yes
"ecoepidemiology and complete genome comparison of different strains of severe acute respiratory syndrome-related rhinolophus bat coronavirus in china reveal bats as a reservoir for acute, self-limiting infection that allows recombination events",Lau et al.,J Virol,2010,64,7,0.109375,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,alphacoronavirus,NA,Rh-BatCoV HKU2,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Guangdong,NA,NA,NA,NA,NA,NA,2004,April,2008,March,1,1,1,1,Yes
"ecoepidemiology and complete genome comparison of different strains of severe acute respiratory syndrome-related rhinolophus bat coronavirus in china reveal bats as a reservoir for acute, self-limiting infection that allows recombination events",Lau et al.,J Virol,2010,1337,17,0.012715,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,coinfection,Sarbecovirus,Rh-BatCoV HKU2,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2004,April,2008,March,1,1,1,1,Yes
"ecoepidemiology and complete genome comparison of different strains of severe acute respiratory syndrome-related rhinolophus bat coronavirus in china reveal bats as a reservoir for acute, self-limiting infection that allows recombination events",Lau et al.,J Virol,2010,64,3,0.046875,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,coinfection,Sarbecovirus,Rh-BatCoV HKU2,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Guangdong,NA,NA,NA,NA,NA,NA,2004,April,2008,March,1,1,1,1,Yes
evidence for an ancestral association of human coronavirus 229e with bats,Corman et al.,J Virol,2015,68,0,0,Emballonuridae,Coleura,Coleura afra,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,Ashanti,NA,NA,NA,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
evidence for an ancestral association of human coronavirus 229e with bats,Corman et al.,J Virol,2015,242,19,0.078512,Hipposideridae,Hipposideros,Hipposideros abae,1,alphacoronavirus,Duvinacovirus,HCoV-229E,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,Ashanti,NA,NA,NA,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
evidence for an ancestral association of human coronavirus 229e with bats,Corman et al.,J Virol,2015,12,0,0,Hipposideridae,Hipposideros,Hipposideros gigas,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,Ashanti,NA,NA,NA,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
evidence for an ancestral association of human coronavirus 229e with bats,Corman et al.,J Virol,2015,5,0,0,Hipposideridae,Hipposideros,Hipposideros jonesi,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,Ashanti,NA,NA,NA,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
evidence for an ancestral association of human coronavirus 229e with bats,Corman et al.,J Virol,2015,1611,62,0.038485,Hipposideridae,Hipposideros,Hipposideros ruber,1,alphacoronavirus,Duvinacovirus,HCoV-229E,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,Ashanti,NA,NA,NA,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
evidence for an ancestral association of human coronavirus 229e with bats,Corman et al.,J Virol,2015,91,0,0,Nycteridae,Nycteris,Nycteris gambiensis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,Ashanti,NA,NA,NA,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
evidence for an ancestral association of human coronavirus 229e with bats,Corman et al.,J Virol,2015,4,0,0,Rhinolophidae,Rhinolophus,Rhinolophus alcyone,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,Ashanti,NA,NA,NA,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
evidence for an ancestral association of human coronavirus 229e with bats,Corman et al.,J Virol,2015,9,0,0,Rhinolophidae,Rhinolophus,Rhinolophus landeri,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,Ashanti,NA,NA,NA,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
evidence for an ancestral association of human coronavirus 229e with bats,Corman et al.,J Virol,2015,21,0,0,Emballonuridae,Taphozous,Taphozous perforatus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,Ashanti,NA,NA,NA,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
evidence for an ancestral association of human coronavirus 229e with bats,Corman et al.,J Virol,2015,20,0,0,Pteropodidae,Myonycteris,Myonycteris angolensis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,Ashanti,NA,NA,NA,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
evidence for an ancestral association of human coronavirus 229e with bats,Corman et al.,J Virol,2015,4,0,0,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,Ashanti,NA,NA,NA,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,2,0,0,Hipposideridae,Aselliscus,Aselliscus stoliczkanus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Guizhou,Anlong,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,35,1,0.028571,Hipposideridae,Hipposideros,Hipposideros armiger,1,alphacoronavirus,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Guizhou,Anlong,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,179,14,0.078212,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,alphacoronavirus,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Guizhou,Anlong,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,5,3,0.6,Vespertilionidae,Myotis,Myotis davidii,1,alphacoronavirus,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Guizhou,Anlong,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,4,1,0.25,Vespertilionidae,Myotis,Myotis siligorensis,1,alphacoronavirus,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Guizhou,Anlong,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,1,1,1,Rhinolophidae,Rhinolophus,Rhinolophus macrotis,1,alphacoronavirus,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Guizhou,Anlong,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,30,2,0.066667,Rhinolophidae,Rhinolophus,Rhinolophus pearsonii,1,alphacoronavirus,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Guizhou,Anlong,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,22,1,0.045455,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,alphacoronavirus,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Guizhou,Anlong,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,23,1,0.043478,Rhinolophidae,Rhinolophus,Rhinolophus rex,1,betacoronavirus,Sarbecovirus,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Guizhou,Anlong,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,83,5,0.060241,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,Sarbecovirus,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Guizhou,Anlong,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Guizhou,Anlong,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,19,2,0.105263,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,alphacoronavirus,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Henan,Neixiang,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,21,3,0.142857,Vespertilionidae,Murina,Murina leucogaster,1,alphacoronavirus,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Henan,Neixiang,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,4,2,0.5,Vespertilionidae,Myotis,Myotis davidii,1,alphacoronavirus,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Henan,Neixiang,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,3,0,0,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Henan,Neixiang,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,8,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Henan,Neixiang,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,7,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pearsonii,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Henan,Neixiang,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,45,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Henan,Neixiang,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,4,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Henan,Neixiang,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,1,0,0,Vespertilionidae,Myotis,Myotis pilosus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Henan,Luishi,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,19,2,0.105263,Vespertilionidae,Murina,Murina leucogaster,1,alphacoronavirus,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Henan,Luishi,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,1,0,0,Vespertilionidae,Myotis,Myotis davidii,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Henan,Luishi,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,18,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Henan,Luishi,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,2,0,0,Rhinolophidae,Rhinolophus,Rhinolophus luctus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Henan,Luishi,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,57,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Henan,Luishi,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,2,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Henan,Luishi,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,2,0,0,Vespertilionidae,Barbastella,Barbastella beijingensis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Henan,Jiyuan,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus savii,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Henan,Jiyuan,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,2,0,0,Vespertilionidae,Murina,Murina leucogaster,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Henan,Jiyuan,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,3,0,0,Vespertilionidae,Murina,NA,NA,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Henan,Jiyuan,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,1,0,0,Vespertilionidae,Myotis,Myotis davidii,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Henan,Jiyuan,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,4,0,0,Vespertilionidae,Plecotus,Plecotus auritus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Henan,Jiyuan,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,157,2,0.012739,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,betacoronavirus,Sarbecovirus,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Henan,Jiyuan,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,29,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Henan,Jiyuan,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus luctus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Zhejiang,Longquan,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,21,1,0.047619,Rhinolophidae,Rhinolophus,Rhinolophus pearsonii,1,betacoronavirus,Sarbecovirus,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Zhejiang,Longquan,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Zhejiang,Longquan,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,136,3,0.022059,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,Sarbecovirus,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Zhejiang,Longquan,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,1,1,1,Rhinolophidae,Rhinolophus,Rhinolophus thomasi,1,betacoronavirus,Sarbecovirus,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Zhejiang,Longquan,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
extensive diversity of coronaviruses in bats from china,Lin et al.,Virology,2017,112,28,0.25,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,betacoronavirus,Sarbecovirus,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Zhejiang,Longquan,NA,NA,NA,NA,NA,2012,NA,2015,NA,1,1,1,1,Yes
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,alphacoronavirus,NA,HKU-2 (related),single,cross-sectional,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Yingde,NA,NA,NA,2013,June,NA,NA,NA,NA,1,0,0,0,No
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,8,0,0,Vespertilionidae,Pipistrellus,Pipistrellus abramus,1,alphacoronavirus,NA,HKU-2 (related),single,cross-sectional,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Yingde,NA,NA,NA,2013,June,NA,NA,NA,NA,1,0,0,0,No
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,2,0,0,Vespertilionidae,Myotis,Myotis pilosus,1,alphacoronavirus,NA,HKU-2 (related),single,cross-sectional,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Yingde,NA,NA,NA,2013,June,NA,NA,NA,NA,1,0,0,0,No
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus abramus,1,alphacoronavirus,NA,HKU-2 (related),single,cross-sectional,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Yangshan,NA,NA,NA,2013,July,NA,NA,NA,NA,1,0,0,0,No
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,36,0,0,Hipposideridae,Hipposideros,Hipposideros pratti,1,alphacoronavirus,NA,HKU-2 (related),single,cross-sectional,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Yangshan,NA,NA,NA,2013,July,NA,NA,NA,NA,1,0,0,0,No
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,27,5,0.185185,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,alphacoronavirus,NA,HKU-2 (related),pooled,longitudinal,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Ruyuan,NA,NA,4,NA,NA,2013,July,2016,August,1,1,1,1,No
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,11,0,0,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,alphacoronavirus,NA,HKU-2 (related),pooled,longitudinal,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Ruyuan,NA,NA,4,NA,NA,2013,July,2016,August,1,1,1,1,No
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,3,0,0,Rhinolophidae,Rhinolophus,Rhinolophus macrotis,1,alphacoronavirus,NA,HKU-2 (related),pooled,longitudinal,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Ruyuan,NA,NA,4,NA,NA,2013,July,2016,August,1,1,1,1,No
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,41,3,0.073171,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,alphacoronavirus,NA,HKU-2 (related),pooled,longitudinal,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Ruyuan,NA,NA,4,NA,NA,2013,July,2016,August,1,1,1,1,No
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,9,7,0.777778,Rhinolophidae,Rhinolophus,Rhinolophus rex,1,alphacoronavirus,NA,HKU-2 (related),pooled,longitudinal,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Ruyuan,NA,NA,4,NA,NA,2013,July,2016,August,1,1,1,1,No
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,7,0,0,Hipposideridae,Hipposideros,Hipposideros pratti,1,alphacoronavirus,NA,HKU-2 (related),pooled,longitudinal,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Ruyuan,NA,NA,4,NA,NA,2013,July,2016,August,1,1,1,1,No
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,70,2,0.028571,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,alphacoronavirus,NA,HKU-2 (related),pooled,longitudinal,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Conghua,NA,NA,3,NA,NA,2014,September,2016,August,1,1,1,1,No
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,34,7,0.205882,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,alphacoronavirus,NA,HKU-2 (related),pooled,longitudinal,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Conghua,NA,NA,3,NA,NA,2014,September,2016,August,1,1,1,1,No
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,11,2,0.181818,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,alphacoronavirus,NA,HKU-2 (related),pooled,longitudinal,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Conghua,NA,NA,3,NA,NA,2014,September,2016,August,1,1,1,1,No
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,10,0,0,Hipposideridae,Hipposideros,Hipposideros pomona,1,alphacoronavirus,NA,HKU-2 (related),pooled,longitudinal,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Conghua,NA,NA,3,NA,NA,2014,September,2016,August,1,1,1,1,No
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,1,0,0,Vespertilionidae,Myotis,Myotis pilosus,1,alphacoronavirus,NA,HKU-2 (related),pooled,longitudinal,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Conghua,NA,NA,3,NA,NA,2014,September,2016,August,1,1,1,1,No
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,37,4,0.108108,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,alphacoronavirus,NA,HKU-2 (related),pooled,longitudinal,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Huidong,NA,NA,4,NA,NA,2013,June,2015,June,1,1,1,1,No
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,59,27,0.457627,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,alphacoronavirus,NA,HKU-2 (related),pooled,longitudinal,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Huidong,NA,NA,4,NA,NA,2013,June,2015,June,1,1,1,1,No
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,15,0,0,Rhinolophidae,Rhinolophus,Rhinolophus macrotis,1,alphacoronavirus,NA,HKU-2 (related),pooled,longitudinal,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Huidong,NA,NA,4,NA,NA,2013,June,2015,June,1,1,1,1,No
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,alphacoronavirus,NA,HKU-2 (related),pooled,longitudinal,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Huidong,NA,NA,4,NA,NA,2013,June,2015,June,1,1,1,1,No
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,2,0,0,Hipposideridae,Hipposideros,Hipposideros pomona,1,alphacoronavirus,NA,HKU-2 (related),pooled,longitudinal,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Huidong,NA,NA,4,NA,NA,2013,June,2015,June,1,1,1,1,No
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,84,0,0,Vespertilionidae,Myotis,Myotis pilosus,1,alphacoronavirus,NA,HKU-2 (related),pooled,longitudinal,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Huidong,NA,NA,4,NA,NA,2013,June,2015,June,1,1,1,1,No
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,55,1,0.018182,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,alphacoronavirus,NA,HKU-2 (related),single,cross-sectional,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Baoan,NA,NA,NA,2015,June,NA,NA,NA,NA,1,0,0,0,No
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,28,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,alphacoronavirus,NA,HKU-2 (related),single,cross-sectional,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Xiangzhou,NA,NA,NA,2014,September,NA,NA,NA,NA,0,1,0,0,No
fatal swine acute diarrhoea syndrome caused by an hku2-related coronavirus of bat origin,Zhou et al.,Nature,2018,38,0,0,Hipposideridae,Hipposideros,Hipposideros pomona,1,alphacoronavirus,NA,HKU-2 (related),single,cross-sectional,PCR,nested PCR,multiple,Other,S1,"faecal, rectal, or anal",swab,China,Guangdong,Xiangzhou,NA,NA,NA,2014,September,NA,NA,NA,NA,0,1,0,0,No
first report of coronaviruses in northern european bats,Kivistš et al.,Vector Borne Zoonotic Dis,2020,22,2,0.090909,Vespertilionidae,Eptesicus,Eptesicus nilssonii,1,betacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Finland,NA,NA,NA,NA,NA,NA,NA,2014,NA,2016,NA,1,1,1,1,No
first report of coronaviruses in northern european bats,Kivistš et al.,Vector Borne Zoonotic Dis,2020,6,2,0.333333,Vespertilionidae,Myotis,Myotis brandtii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Finland,NA,NA,NA,NA,NA,NA,NA,2014,NA,2016,NA,1,1,1,1,No
first report of coronaviruses in northern european bats,Kivistš et al.,Vector Borne Zoonotic Dis,2020,27,4,0.148148,Vespertilionidae,Myotis,Myotis daubentonii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Finland,NA,NA,NA,NA,NA,NA,NA,2014,NA,2016,NA,1,1,1,1,No
first report of coronaviruses in northern european bats,Kivistš et al.,Vector Borne Zoonotic Dis,2020,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus nathusii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Finland,NA,NA,NA,NA,NA,NA,NA,2014,NA,2016,NA,1,1,1,1,No
first report of coronaviruses in northern european bats,Kivistš et al.,Vector Borne Zoonotic Dis,2020,2,0,0,Vespertilionidae,Plecotus,Plecotus auritus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Finland,NA,NA,NA,NA,NA,NA,NA,2014,NA,2016,NA,1,1,1,1,No
first report of coronaviruses in northern european bats,Kivistš et al.,Vector Borne Zoonotic Dis,2020,14,0,0,Vespertilionidae,Eptesicus,Eptesicus nilssonii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Finland,NA,NA,NA,NA,NA,NA,NA,2014,NA,2016,NA,1,1,1,1,No
first report of coronaviruses in northern european bats,Kivistš et al.,Vector Borne Zoonotic Dis,2020,5,2,0.4,Vespertilionidae,Myotis,Myotis daubentonii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Finland,NA,NA,NA,NA,NA,NA,NA,2014,NA,2016,NA,1,1,1,1,No
first report of coronaviruses in northern european bats,Kivistš et al.,Vector Borne Zoonotic Dis,2020,1,0,0,Vespertilionidae,Plecotus,Plecotus auritus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Finland,NA,NA,NA,NA,NA,NA,NA,2014,NA,2016,NA,1,1,1,1,No
"surveillance for coronaviruses in bats, lebanon and egypt, 2013-2015",Shehata et al.,Emerg Infect Dis,2016,82,0,0,Emballonuridae,Taphozous,Taphozous perforatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Egypt,NA,NA,NA,NA,NA,NA,NA,2013,February,2015,April,1,1,1,1,Yes
"surveillance for coronaviruses in bats, lebanon and egypt, 2013-2015",Shehata et al.,Emerg Infect Dis,2016,31,1,0.032258,Vespertilionidae,Pipistrellus,Pipistrellus deserti,1,betacoronavirus,NA,HKU-9 like,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,liver,tissue,Egypt,NA,NA,NA,NA,NA,NA,NA,2013,February,2015,April,1,1,1,1,Yes
"surveillance for coronaviruses in bats, lebanon and egypt, 2013-2015",Shehata et al.,Emerg Infect Dis,2016,257,1,0.003891,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,betacoronavirus,Embecovirus,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,Egypt,NA,NA,NA,NA,NA,NA,NA,2013,February,2015,April,1,1,1,1,Yes
"surveillance for coronaviruses in bats, lebanon and egypt, 2013-2015",Shehata et al.,Emerg Infect Dis,2016,257,5,0.019455,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,betacoronavirus,NA,HKU-9 like,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,Egypt,NA,NA,NA,NA,NA,NA,NA,2013,February,2015,April,1,1,1,1,Yes
"surveillance for coronaviruses in bats, lebanon and egypt, 2013-2015",Shehata et al.,Emerg Infect Dis,2016,257,2,0.007782,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,betacoronavirus,NA,HKU-9 like,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,Egypt,NA,NA,NA,NA,NA,NA,NA,2013,February,2015,April,1,1,1,1,Yes
"surveillance for coronaviruses in bats, lebanon and egypt, 2013-2015",Shehata et al.,Emerg Infect Dis,2016,257,5,0.019455,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,betacoronavirus,NA,HKU-9 like,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,liver,tissue,Egypt,NA,NA,NA,NA,NA,NA,NA,2013,February,2015,April,1,1,1,1,Yes
"surveillance for coronaviruses in bats, lebanon and egypt, 2013-2015",Shehata et al.,Emerg Infect Dis,2016,257,5,0.019455,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,betacoronavirus,NA,HKU-9 like,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,Egypt,NA,NA,NA,NA,NA,NA,NA,2013,February,2015,April,1,1,1,1,Yes
"surveillance for coronaviruses in bats, lebanon and egypt, 2013-2015",Shehata et al.,Emerg Infect Dis,2016,4,0,0,Rhinolophidae,Rhinolophus,Rhinolophus hipposideros,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Lebanon,NA,NA,NA,NA,NA,NA,NA,2013,February,2015,April,1,1,1,1,Yes
"surveillance for coronaviruses in bats, lebanon and egypt, 2013-2015",Shehata et al.,Emerg Infect Dis,2016,6,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Lebanon,NA,NA,NA,NA,NA,NA,NA,2013,February,2015,April,1,1,1,1,Yes
"surveillance for coronaviruses in bats, lebanon and egypt, 2013-2015",Shehata et al.,Emerg Infect Dis,2016,3,1,0.333333,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,betacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,Lebanon,NA,NA,NA,NA,NA,NA,NA,2013,February,2015,April,1,1,1,1,Yes
"surveillance for coronaviruses in bats, lebanon and egypt, 2013-2015",Shehata et al.,Emerg Infect Dis,2016,438,24,0.054795,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,betacoronavirus,NA,HKU-9 like,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,Lebanon,NA,NA,NA,NA,NA,NA,NA,2013,February,2015,April,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,37,6,0.162162,Pteropodidae,Rousettus,Rousettus leschenaultii,1,betacoronavirus,Nobecovirus,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,intestine,tissue,China,Guangdong,NA,NA,NA,NA,2005,NA,NA,NA,NA,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,100,14,0.14,Pteropodidae,Rousettus,Rousettus leschenaultii,1,betacoronavirus,Nobecovirus,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,intestine,tissue,China,Yunnan,NA,NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,51,14,0.27451,Pteropodidae,Cynopterus,Cynopterus sphinx,1,betacoronavirus,Nobecovirus,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,intestine,tissue,China,Guangdong,NA,NA,NA,NA,2005,NA,NA,NA,NA,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,41,1,0.02439,Pteropodidae,Megaerops,Megaerops kusnotoi,1,betacoronavirus,Nobecovirus,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,intestine,tissue,China,Yunnan,NA,NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,9,0,0,Hipposideridae,Hipposideros,Hipposideros cineraceus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,pooled tissue,tissue,China,Guangdong,NA,NA,NA,NA,2005,NA,NA,NA,NA,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,15,1,0.066667,Hipposideridae,Hipposideros,Hipposideros cineraceus,1,alphacoronavirus,NA,YDB5C,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,intestine,tissue,China,Tibet,NA,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,84,0,0,Hipposideridae,Hipposideros,Hipposideros pomona,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,pooled tissue,tissue,China,Yunnan,NA,NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,68,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,pooled tissue,tissue,China,Guangdong,NA,NA,NA,NA,2005,NA,NA,NA,NA,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,2,0,0,Hipposideridae,Hipposideros,Hipposideros larvatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,pooled tissue,tissue,China,Yunnan,NA,NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,11,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,pooled tissue,tissue,China,Guangdong,NA,NA,NA,NA,2005,NA,NA,NA,NA,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,18,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,pooled tissue,tissue,China,Yunnan,NA,NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,33,0,0,Hipposideridae,Aselliscus,Aselliscus stoliczkanus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,pooled tissue,tissue,China,Yunnan,NA,NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,42,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,pooled tissue,tissue,China,Yunnan,NA,NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,16,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,pooled tissue,tissue,China,Liaoning,NA,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,30,1,0.033333,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,intestine,tissue,China,Jilin,NA,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,78,7,0.089744,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,genus not specified,Sarbecovirus,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,intestine,tissue,China,Yunnan,NA,NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,5,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,pooled tissue,tissue,China,Guangdong,NA,NA,NA,NA,2005,NA,NA,NA,NA,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,6,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,pooled tissue,tissue,China,Yunnan,NA,NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,3,0,0,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,pooled tissue,tissue,China,Yunnan,NA,NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,37,0,0,Rhinolophidae,Rhinolophus,Rhinolophus hipposideros,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,pooled tissue,tissue,China,Yunnan,NA,NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,5,0,0,Rhinolophidae,Rhinolophus,Rhinolophus hipposideros,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,pooled tissue,tissue,China,Tibet,NA,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,95,5,0.052632,Vespertilionidae,Myotis,Myotis daubentonii,1,betacoronavirus,Merbecovirus,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,intestine,tissue,China,Yunnan,NA,NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,8,0,0,Vespertilionidae,Myotis,Myotis laniger,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,pooled tissue,tissue,China,Yunnan,NA,NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,3,0,0,Vespertilionidae,Myotis,Myotis chinensis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,pooled tissue,tissue,China,Yunnan,NA,NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,40,0,0,Vespertilionidae,Myotis,Myotis capaccinii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,pooled tissue,tissue,China,Yunnan,NA,NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,38,0,0,Vespertilionidae,Myotis,Myotis pilosus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,pooled tissue,tissue,China,Liaoning,NA,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,27,0,0,Vespertilionidae,Myotis,Myotis pilosus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,pooled tissue,tissue,China,Jilin,NA,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,8,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,pooled tissue,tissue,China,Yunnan,NA,NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,40,1,0.025,Vespertilionidae,Murina,Murina leucogaster,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,intestine,tissue,China,Jilin,NA,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
detection and characterization of diverse alpha- and betacoronaviruses from bats in china,Xu et al.,Virol Sin,2016,1,0,0,Megadermatidae,Megaderma,Megaderma lyra,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRP,pooled tissue,tissue,China,Yunnan,NA,NA,NA,NA,NA,NA,2012,NA,2013,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,3,0,0,Phyllostomidae,Artibeus,Artibeus fimbriatus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,Atlantic Forest Biome (São Paulo/Paraná),Undisturbed forest,NA,NA,NA,NA,NA,2010,NA,2014,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,60,1,0.016667,Phyllostomidae,Artibeus,Artibeus lituratus,1,betacoronavirus,NA,BatCoV/Art.lit./2064/BRA/2011,single,cross-sectional,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,Paraná,Iguaçu National Park (Undisturbed forest),NA,NA,NA,2011,NA,NA,NA,NA,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,60,1,0.016667,Phyllostomidae,Artibeus,Artibeus lituratus,1,alphacoronavirus,NA,BatCoV/Art.lit./2294/BRA/2012,single,cross-sectional,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,Paraná,Iguaçu National Park (Undisturbed forest),NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,60,1,0.016667,Phyllostomidae,Artibeus,Artibeus lituratus,1,alphacoronavirus,NA,BatCoV/Art.lit./1816/BRA/2010,single,cross-sectional,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,Paraná,State Park Vila Rica do Espírito Santo (Fragmented forest),NA,NA,NA,2010,NA,NA,NA,NA,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,6,0,0,Phyllostomidae,Artibeus,Artibeus lituratus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,Atlantic Forest Biome (São Paulo/Paraná),Urban area,NA,NA,NA,NA,NA,2010,NA,2014,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,1,0,0,Phyllostomidae,Artibeus,Artibeus obscurus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,Atlantic Forest Biome (São Paulo/Paraná),Urban area,NA,NA,NA,NA,NA,2010,NA,2014,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,2,0,0,Phyllostomidae,Artibeus,Artibeus planirostris,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,Atlantic Forest Biome (São Paulo/Paraná),Undisturbed forest,NA,NA,NA,NA,NA,2010,NA,2014,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,1,0,0,Phyllostomidae,Artibeus,Artibeus planirostris,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,Atlantic Forest Biome (São Paulo/Paraná),Fragmented forest,NA,NA,NA,NA,NA,2010,NA,2014,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,1,0,0,Phyllostomidae,Artibeus,Artibeus planirostris,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,Atlantic Forest Biome (São Paulo/Paraná),Urban area,NA,NA,NA,NA,NA,2010,NA,2014,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,12,0,0,Phyllostomidae,Carollia,Carollia perspicillata,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,Atlantic Forest Biome (São Paulo/Paraná),Undisturbed forest,NA,NA,NA,NA,NA,2010,NA,2014,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,32,2,0.0625,Phyllostomidae,Carollia,Carollia perspicillata,1,alphacoronavirus,NA,"BatCoV/Car.per./1514/BRA/2011 (1), BatCoV/Car.per./1516/BRA/2011 (1)",single,cross-sectional,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,Paraná,"Private Reserve of Natural Heritage “Fazenda Barbacena”, São Pedro do Ivaí (Fragmented forest)",NA,NA,NA,2011,NA,NA,NA,NA,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,32,1,0.03125,Phyllostomidae,Carollia,Carollia perspicillata,1,alphacoronavirus,NA,BatCoV/Car.per./1599/BRA/2012,single,cross-sectional,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,Paraná,State Park Vila Rica do Espírito Santo (Fragmented forest),NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,10,0,0,Phyllostomidae,Desmodus,Desmodus rotundus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,Atlantic Forest Biome (São Paulo/Paraná),Fragmented forest,NA,NA,NA,NA,NA,2010,NA,2014,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,5,0,0,Vespertilionidae,Eptesicus,Eptesicus furinalis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,Atlantic Forest Biome (São Paulo/Paraná),Urban area,NA,NA,NA,NA,NA,2010,NA,2014,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,27,1,0.037037,Molossidae,Eumops,Eumops glaucinus,1,betacoronavirus,NA,BatCoV/Eum.gla./242/BRA/2013,single,cross-sectional,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,São Paulo,Araçatuba (Urban area),NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,3,1,0.333333,Phyllostomidae,Glossophaga,Glossophaga soricina,1,alphacoronavirus,NA,BatCoV/Glo.sor./100/BRA/2014,single,cross-sectional,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,São Paulo,Andradina (Urban area),NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,1,0,0,Vespertilionidae,Lasiurus,Lasiurus cinereus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,Atlantic Forest Biome (São Paulo/Paraná),Urban area,NA,NA,NA,NA,NA,2010,NA,2014,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,80,0,0,Molossidae,Molossus,Molossus molossus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,Atlantic Forest Biome (São Paulo/Paraná),Urban area,NA,NA,NA,NA,NA,2010,NA,2014,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,56,1,0.017857,Molossidae,Molossus,Molossus rufus,1,alphacoronavirus,NA,BatCoV/Mol.ruf./92/BRA/2013,single,cross-sectional,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,São Paulo,Penápolis (Urban area),NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,56,1,0.017857,Molossidae,Molossus,Molossus rufus,1,alphacoronavirus,NA,BatCoV/Mol.ruf./63/BRA/2014,single,cross-sectional,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,São Paulo,Penápolis (Urban area),NA,NA,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,8,1,0.125,Vespertilionidae,Myotis,Myotis nigricans,1,alphacoronavirus,NA,BatCoV/Myo.nig./117/BRA/2013,single,cross-sectional,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,São Paulo,Andradina (Urban area),NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,1,1,1,Vespertilionidae,Myotis,Myotis riparius,1,alphacoronavirus,NA,BatCoV/Myo.rip./259/BRA/2013,single,cross-sectional,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,São Paulo,Sud Mennucci (Urban area),NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,3,0,0,Phyllostomidae,Platyrrhinus,Platyrrhinus lineatus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,Atlantic Forest Biome (São Paulo/Paraná),Urban area,NA,NA,NA,NA,NA,2010,NA,2014,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,22,2,0.090909,Phyllostomidae,Sturnira,Sturnira lilium,1,alphacoronavirus,NA,"BatCoV/Stu.lil./1613/BRA/2012 (1), BatCoV/Stu.lil./1617/BRA/2012 (1)",single,cross-sectional,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,Paraná,Iguaçu National Park (Undisturbed forest),NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,6,1,0.166667,Phyllostomidae,Sturnira,Sturnira lilium,1,alphacoronavirus,NA,BatCoV/Stu.lil./1573/BRA/2012,single,cross-sectional,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,Paraná,"Private Reserve of Natural Heritage “Fazenda Barbacena”, São Pedro do Ivaí (Fragmented forest)",NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,Yes
"genetic diversity of bats coronaviruses in the atlantic forest hotspot biome, brazil",G—es et al.,Infect Genet Evol,2016,1,1,1,Phyllostomidae,Vampyressa,Vampyressa pusilla,1,genus not specified,NA,NA,single,cross-sectional,PCR,pancoronavirus Nested PCR,multiple,RdRp,RdRp,intestine,tissue,Brazil,Atlantic Forest Biome (São Paulo/Paraná),Fragmented forest,NA,NA,NA,NA,NA,2010,NA,2014,NA,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,26,0,0,Pteropodidae,Cynopterus,Cynopterus sphinx,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,26,0,0,Pteropodidae,Cynopterus,Cynopterus sphinx,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,73,0,0,Pteropodidae,Rousettus,Rousettus leschenaultii,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,73,0,0,Pteropodidae,Rousettus,Rousettus leschenaultii,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,198,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,198,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,642,0,0,Hipposideridae,Hipposideros,Hipposideros pomona,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,642,0,0,Hipposideridae,Hipposideros,Hipposideros pomona,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,359,0,0,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,359,0,0,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,89,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,89,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,2012,0,0,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,2012,0,0,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pulveratus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pulveratus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,15,0,0,Miniopteridae,Miniopterus,Miniopterus magnater,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,15,0,0,Miniopteridae,Miniopterus,Miniopterus magnater,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,450,0,0,Miniopteridae,Miniopterus,Miniopterus pusillus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,450,0,0,Miniopteridae,Miniopterus,Miniopterus pusillus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,758,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,758,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,122,0,0,Vespertilionidae,Myotis,Myotis chinensis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,122,0,0,Vespertilionidae,Myotis,Myotis chinensis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,7,0,0,Vespertilionidae,Myotis,Myotis horsfieldii,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,7,0,0,Vespertilionidae,Myotis,Myotis horsfieldii,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,4,0,0,Vespertilionidae,Myotis,Myotis muricola,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,4,0,0,Vespertilionidae,Myotis,Myotis muricola,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,307,0,0,Vespertilionidae,Myotis,Myotis pilosus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,307,0,0,Vespertilionidae,Myotis,Myotis pilosus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,54,0,0,Vespertilionidae,Nyctalus,Nyctalus noctula,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,54,0,0,Vespertilionidae,Nyctalus,Nyctalus noctula,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,219,0,0,Vespertilionidae,Pipistrellus,Pipistrellus abramus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,219,55,0.251142,Vespertilionidae,Pipistrellus,Pipistrellus abramus,1,betacoronavirus,Merbecovirus,Pipistrellus bat CoV HKU5,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,Site 13,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,11,0,0,Vespertilionidae,Pipistrellus,Pipistrellus tenuis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,11,0,0,Vespertilionidae,Pipistrellus,Pipistrellus tenuis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,18,0,0,Vespertilionidae,Scotophilus,Scotophilus kuhlii,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,18,0,0,Vespertilionidae,Scotophilus,Scotophilus kuhlii,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,115,0,0,Vespertilionidae,Tylonycteris,Tylonycteris pachypus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,115,29,0.252174,Vespertilionidae,Tylonycteris,Tylonycteris pachypus,1,betacoronavirus,Merbecovirus,Tylonycteris bat CoV HKU4,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,Site 7,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,1,0,0,Vespertilionidae,Tylonycteris,Tylonycteris robustula,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,lung or respiratory,tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
genetic characterization of betacoronavirus lineage c viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus hku5 in japanese pipistrelle: implications for the origin of the novel middle east respiratory syndrome coronavirus,Lau et al.,J Virol,2013,1,0,0,Vespertilionidae,Tylonycteris,Tylonycteris robustula,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",tissue,China,Hong Kong,NA,NA,NA,NA,NA,NA,2005,April,2012,August,1,1,1,1,Yes
detection and full genome characterization of two beta cov viruses related to middle east respiratory syndrome from bats in italy,Moreno et al.,Virol J,2017,1,1,1,Vespertilionidae,Pipistrellus,Pipistrellus savii,1,betacoronavirus,Merbecovirus,BatCoV-Ita1,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Italy,Modena,NA,NA,NA,NA,2011,NA,NA,NA,NA,NA,1,1,1,1,No
detection and full genome characterization of two beta cov viruses related to middle east respiratory syndrome from bats in italy,Moreno et al.,Virol J,2017,1,1,1,Vespertilionidae,Pipistrellus,Pipistrellus kuhlii,1,betacoronavirus,Merbecovirus,BatCoV-Ita2,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Italy,Modena,NA,NA,NA,NA,2011,NA,NA,NA,NA,NA,1,1,1,1,No
detection and phylogenetic analysis of group 1 coronaviruses in south american bats,Carrington et al.,Emerg Infect Dis,2008,2,0,0,Phyllostomidae,Carollia,Carollia perspicillata,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Trinidad,NA,Arima,NA,NA,NA,NA,NA,2006,December,2007,July,1,0,1,1,Yes
detection and phylogenetic analysis of group 1 coronaviruses in south american bats,Carrington et al.,Emerg Infect Dis,2008,2,1,0.5,Phyllostomidae,Carollia,Carollia perspicillata,1,alphacoronavirus,NA,Bt-CoV/Trinidad/1FY2B,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Trinidad,NA,Fyzabad,NA,NA,NA,NA,NA,2006,December,2007,July,1,0,1,1,Yes
detection and phylogenetic analysis of group 1 coronaviruses in south american bats,Carrington et al.,Emerg Infect Dis,2008,1,0,0,Phyllostomidae,Carollia,Carollia perspicillata,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Trinidad,NA,Tabaquite,NA,NA,NA,NA,NA,2006,December,2007,July,1,0,1,1,Yes
detection and phylogenetic analysis of group 1 coronaviruses in south american bats,Carrington et al.,Emerg Infect Dis,2008,12,1,0.083333,Phyllostomidae,Glossophaga,Glossophaga soricina,1,alphacoronavirus,NA,Bt-CoV/Trinidad/1CO7B,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Trinidad,NA,Couva,NA,NA,NA,NA,NA,2006,December,2007,July,1,0,1,1,Yes
detection and phylogenetic analysis of group 1 coronaviruses in south american bats,Carrington et al.,Emerg Infect Dis,2008,7,0,0,Phyllostomidae,Glossophaga,Glossophaga soricina,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Trinidad,NA,Tabaquite,NA,NA,NA,NA,NA,2006,December,2007,July,1,0,1,1,Yes
detection and phylogenetic analysis of group 1 coronaviruses in south american bats,Carrington et al.,Emerg Infect Dis,2008,6,0,0,Noctilionidae,Noctilio,Noctilio leporinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Trinidad,NA,Couva,NA,NA,NA,NA,NA,2006,December,2007,July,1,0,1,1,Yes
detection and phylogenetic analysis of group 1 coronaviruses in south american bats,Carrington et al.,Emerg Infect Dis,2008,3,0,0,Phyllostomidae,Desmodus,Desmodus rotundus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Trinidad,NA,Fyzabad,NA,NA,NA,NA,NA,2006,December,2007,July,1,0,1,1,Yes
detection and phylogenetic analysis of group 1 coronaviruses in south american bats,Carrington et al.,Emerg Infect Dis,2008,3,0,0,Phyllostomidae,Desmodus,Desmodus rotundus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Trinidad,NA,Morne Diablo,NA,NA,NA,NA,NA,2006,December,2007,July,1,0,1,1,Yes
detection and phylogenetic analysis of group 1 coronaviruses in south american bats,Carrington et al.,Emerg Infect Dis,2008,1,0,0,Phyllostomidae,Desmodus,Desmodus rotundus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Trinidad,NA,Rousillac,NA,NA,NA,NA,NA,2006,December,2007,July,1,0,1,1,Yes
detection and phylogenetic analysis of group 1 coronaviruses in south american bats,Carrington et al.,Emerg Infect Dis,2008,7,0,0,Phyllostomidae,Desmodus,Desmodus rotundus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Trinidad,NA,La Brae,NA,NA,NA,NA,NA,2006,December,2007,July,1,0,1,1,Yes
detection and phylogenetic analysis of group 1 coronaviruses in south american bats,Carrington et al.,Emerg Infect Dis,2008,29,0,0,Mormoopidae,Pteronotus,Pteronotus parnellii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Trinidad,NA,Tabaquite,NA,NA,NA,NA,NA,2006,December,2007,July,1,0,1,1,Yes
detection and phylogenetic analysis of group 1 coronaviruses in south american bats,Carrington et al.,Emerg Infect Dis,2008,2,0,0,Mormoopidae,Pteronotus,Pteronotus parnellii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Trinidad,NA,Wallerfield,NA,NA,NA,NA,NA,2006,December,2007,July,1,0,1,1,Yes
detection and phylogenetic analysis of group 1 coronaviruses in south american bats,Carrington et al.,Emerg Infect Dis,2008,25,0,0,Molossidae,Molossus,Molossus molossus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Trinidad,NA,Talparo,NA,NA,NA,NA,NA,2006,December,2007,July,1,0,1,1,Yes
detection and phylogenetic analysis of group 1 coronaviruses in south american bats,Carrington et al.,Emerg Infect Dis,2008,1,0,0,Mormoopidae,Mormoops,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Trinidad,NA,Tamana,NA,NA,NA,NA,NA,2006,December,2007,July,1,0,1,1,Yes
detection and phylogenetic analysis of group 1 coronaviruses in south american bats,Carrington et al.,Emerg Infect Dis,2008,11,0,0,Phyllostomidae,Phyllostomus,Phyllostomus hastatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Trinidad,NA,Wallerfield,NA,NA,NA,NA,NA,2006,December,2007,July,1,0,1,1,Yes
"detection and prevalence patterns of group i coronaviruses in bats, northern germany",Gloza-rausch et al.,Emerg Infect Dis,2008,9,1,0.111111,Vespertilionidae,Myotis,Myotis bechsteinii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Germany,NA,Bornhöved,54.10111111,10.23722222,NA,2007,NA,NA,June,NA,August,1,0,0,0,No
"detection and prevalence patterns of group i coronaviruses in bats, northern germany",Gloza-rausch et al.,Emerg Infect Dis,2008,2,0,0,Vespertilionidae,Myotis,Myotis brandtii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Germany,NA,Westensee,54.27888889,9.971388889,NA,2007,NA,NA,June,NA,August,1,0,0,0,No
"detection and prevalence patterns of group i coronaviruses in bats, northern germany",Gloza-rausch et al.,Emerg Infect Dis,2008,67,17,0.253731,Vespertilionidae,Myotis,Myotis dasycneme,1,alphacoronavirus,Lineage 1,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Germany,NA,"Achterwehr, Methorst,  Schwentinebrücke, Projensdorfer Gehölz",53.93583333,10.31583333,NA,2007,NA,NA,June,NA,August,1,0,0,0,No
"detection and prevalence patterns of group i coronaviruses in bats, northern germany",Gloza-rausch et al.,Emerg Infect Dis,2008,155,8,0.051613,Vespertilionidae,Myotis,Myotis daubentonii,1,alphacoronavirus,Lineage 4,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Germany,NA,"Westensee, Achterwehr, Molfsee, Schwentinebrücke, Jägerslust, Projensdorfer Gehölz",53.93583333,10.31583333,NA,2007,NA,NA,June,NA,August,1,0,0,0,No
"detection and prevalence patterns of group i coronaviruses in bats, northern germany",Gloza-rausch et al.,Emerg Infect Dis,2008,3,0,0,Vespertilionidae,Nyctalus,Nyctalus noctula,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Germany,NA,Schwentinebrücke,54.27166667,10.28722222,NA,2007,NA,NA,June,NA,August,1,0,0,0,No
"detection and prevalence patterns of group i coronaviruses in bats, northern germany",Gloza-rausch et al.,Emerg Infect Dis,2008,22,2,0.090909,Vespertilionidae,Pipistrellus,Pipistrellus nathusii,1,alphacoronavirus,Lineage 2,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Germany,NA,"Westensee, Methorst, Schwentinebrücke",53.93583333,10.31583333,NA,2007,NA,NA,June,NA,August,1,0,0,0,No
"detection and prevalence patterns of group i coronaviruses in bats, northern germany",Gloza-rausch et al.,Emerg Infect Dis,2008,57,3,0.052632,Vespertilionidae,Pipistrellus,Pipistrellus pygmaeus,1,alphacoronavirus,Lineage 3,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Germany,NA,"Westensee, Achterwehr, Molfsee, Schwentinebrücke",53.93583333,10.31583333,NA,2007,NA,NA,June,NA,August,1,0,0,0,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,4,0,0,Vespertilionidae,Barbastella,Barbastella barbastellus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,2,0,0,Vespertilionidae,Barbastella,Barbastella barbastellus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,8,1,0.125,Vespertilionidae,Eptesicus,Eptesicus isabellinus,1,betacoronavirus,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,7,0,0,Vespertilionidae,Eptesicus,Eptesicus serotinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,26,2,0.076923,Vespertilionidae,Pipistrellus,Pipistrellus savii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,10,0,0,Vespertilionidae,Pipistrellus,Pipistrellus savii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,2,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,71,1,0.014085,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,1,0,0,Vespertilionidae,Myotis,Myotis alcathoe,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,2,0,0,Vespertilionidae,Myotis,Myotis bechsteinii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,3,0,0,Vespertilionidae,Myotis,Myotis bechsteinii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,11,1,0.090909,Vespertilionidae,Myotis,Myotis blythii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,14,0,0,Vespertilionidae,Myotis,Myotis capaccinii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,39,1,0.025641,Vespertilionidae,Myotis,Myotis daubentonii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,52,0,0,Vespertilionidae,Myotis,Myotis daubentonii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,2,0,0,Vespertilionidae,Myotis,Myotis emarginatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,15,0,0,Vespertilionidae,Myotis,Myotis escalerai,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,1,1,1,Vespertilionidae,Myotis,Myotis myotis,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,17,0,0,Vespertilionidae,Myotis,Myotis myotis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,5,0,0,Vespertilionidae,Myotis,Myotis mystacinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,37,5,0.135135,Vespertilionidae,Nyctalus,Nyctalus lasiopterus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,137,0,0,Vespertilionidae,Nyctalus,Nyctalus lasiopterus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,3,0,0,Vespertilionidae,Myotis,Myotis nattereri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,3,0,0,Vespertilionidae,Myotis,Myotis nattereri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,23,0,0,Vespertilionidae,Nyctalus,Nyctalus leisleri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,11,0,0,Vespertilionidae,Nyctalus,Nyctalus leisleri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,4,1,0.25,Vespertilionidae,Pipistrellus,Pipistrellus kuhlii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,6,0,0,Vespertilionidae,Pipistrellus,Pipistrellus kuhlii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,3,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pygmaeus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,29,1,0.034483,Vespertilionidae,Pipistrellus,NA,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,5,0,0,Vespertilionidae,Pipistrellus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,7,0,0,Vespertilionidae,Plecotus,Plecotus auritus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,7,0,0,Vespertilionidae,Plecotus,Plecotus austriacus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,10,0,0,Vespertilionidae,Plecotus,Plecotus austriacus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,13,0,0,Rhinolophidae,Rhinolophus,Rhinolophus euryale,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,3,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,5,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,4,0,0,Rhinolophidae,Rhinolophus,Rhinolophus hipposideros,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
detection of alpha and betacoronaviruses in multiple iberian bat species,Falc—n et al.,Arch Virol,2011,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus mehelyi,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Spain,NA,NA,NA,NA,NA,NA,NA,2004,NA,2007,NA,1,1,1,1,No
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,57,7,0.122807,Hipposideridae,Hipposideros,Hipposideros ruber,1,alphacoronavirus,NA,similar to HCoV-229E,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Faucon Cave,1.116666667,13.33333333,NA,2009,November,NA,NA,NA,NA,0,1,0,0,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,57,2,0.035088,Hipposideridae,Hipposideros,Hipposideros ruber,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Faucon Cave,1.116666667,13.33333333,NA,2009,November,NA,NA,NA,NA,0,1,0,0,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,58,2,0.034483,Hipposideridae,Hipposideros,Hipposideros ruber,1,alphacoronavirus,NA,similar to HCoV-229E,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Batouala Cave,0,13.75,NA,2009,December,NA,NA,NA,NA,0,0,1,0,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,102,1,0.009804,Miniopteridae,Miniopterus,Miniopterus inflatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Batouala Cave,0,13.75,NA,2009,December,NA,NA,NA,NA,0,0,1,0,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,13,2,0.153846,Hipposideridae,Hipposideros,Hipposideros ruber,1,alphacoronavirus,NA,similar to HCoV-229E,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Faucon Cave,1.116666667,13.33333333,NA,2010,October,NA,NA,NA,NA,0,1,0,0,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,30,1,0.033333,Hipposideridae,Hipposideros,Hipposideros gigas,1,alphacoronavirus,NA,similar to HCoV-229E,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Faucon Cave,1.116666667,13.33333333,NA,2010,October,NA,NA,NA,NA,0,1,0,0,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,16,3,0.1875,Hipposideridae,Hipposideros,Hipposideros gigas,1,betacoronavirus,NA,similar to Zaria bat coronavirus (ZCoV),single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Faucon Cave,1.116666667,13.33333333,NA,2013,July,NA,NA,NA,NA,1,0,0,0,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,5,0,0,Hipposideridae,Hipposideros,Hipposideros ruber,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Haut-Ogooue,Dijibilong Cave,-1.6,13.76666667,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,69,0,0,Miniopteridae,Miniopterus,Miniopterus inflatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Haut-Ogooue,Dijibilong Cave,-1.6,13.76666667,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,8,0,0,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Haut-Ogooue,Dijibilong Cave,-1.6,13.76666667,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,10,0,0,Emballonuridae,Coleura,Coleura afra,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Batouala Cave,0,13.75,NA,2009,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,17,0,0,Hipposideridae,Hipposideros,Hipposideros gigas,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Batouala Cave,0,13.75,NA,2009,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,4,0,0,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Batouala Cave,0,13.75,NA,2009,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,6,0,0,Miniopteridae,Miniopterus,Miniopterus inflatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Batouala Cave,0,13.75,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,6,0,0,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Batouala Cave,0,13.75,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,46,0,0,Hipposideridae,Hipposideros,Hipposideros ruber,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Zadie Cave,0,13.31666667,NA,2009,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,7,0,0,Hipposideridae,Hipposideros,Hipposideros gigas,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Zadie Cave,0,13.31666667,NA,2009,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,37,0,0,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Zadie Cave,0,13.31666667,NA,2009,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,16,0,0,Hipposideridae,Hipposideros,Hipposideros ruber,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Zadie Cave,0,13.31666667,NA,2010,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,5,0,0,Hipposideridae,Hipposideros,Hipposideros gigas,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Zadie Cave,0,13.31666667,NA,2010,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,28,0,0,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Zadie Cave,0,13.31666667,NA,2010,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,25,0,0,Hipposideridae,Hipposideros,Hipposideros ruber,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Gabon,Ogooue-Ivindo,Zadie Cave,0,13.31666667,NA,2011,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,25,0,0,Hipposideridae,Hipposideros,Hipposideros gigas,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Gabon,Ogooue-Ivindo,Zadie Cave,0,13.31666667,NA,2011,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,50,0,0,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Gabon,Ogooue-Ivindo,Zadie Cave,0,13.31666667,NA,2011,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,1,0,0,Hipposideridae,Hipposideros,Hipposideros ruber,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Zadie Cave,0,13.31666667,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,3,0,0,Hipposideridae,Hipposideros,Hipposideros gigas,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Zadie Cave,0,13.31666667,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,35,0,0,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Zadie Cave,0,13.31666667,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,4,0,0,Hipposideridae,Hipposideros,Hipposideros gigas,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Lolo,Kessipoughou,0,13.28333333,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,4,0,0,Miniopteridae,Miniopterus,Miniopterus inflatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Lolo,Kessipoughou,0,13.28333333,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,119,0,0,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Lolo,Kessipoughou,0,13.28333333,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,24,0,0,Hipposideridae,Hipposideros,Hipposideros gigas,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Faucon Cave,1.116666667,13.33333333,NA,2009,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,34,0,0,Emballonuridae,Coleura,Coleura afra,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Faucon Cave,1.116666667,13.33333333,NA,2010,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,7,0,0,Miniopteridae,Miniopterus,Miniopterus inflatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Faucon Cave,1.116666667,13.33333333,NA,2010,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,50,0,0,Emballonuridae,Coleura,Coleura afra,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Gabon,Ogooue-Ivindo,Faucon Cave,1.116666667,13.33333333,NA,2011,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,25,0,0,Hipposideridae,Hipposideros,Hipposideros ruber,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Gabon,Ogooue-Ivindo,Faucon Cave,1.116666667,13.33333333,NA,2011,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,25,0,0,Hipposideridae,Hipposideros,Hipposideros gigas,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Gabon,Ogooue-Ivindo,Faucon Cave,1.116666667,13.33333333,NA,2011,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,50,0,0,Miniopteridae,Miniopterus,Miniopterus inflatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Gabon,Ogooue-Ivindo,Faucon Cave,1.116666667,13.33333333,NA,2011,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,18,0,0,Emballonuridae,Coleura,Coleura afra,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Faucon Cave,1.116666667,13.33333333,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,16,0,0,Hipposideridae,Hipposideros,Hipposideros ruber,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Faucon Cave,1.116666667,13.33333333,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity and ecology of coronaviruses hosted by cave-dwelling bats in gabon,Maganga et al.,Scientific Reports,2020,11,0,0,Miniopteridae,Miniopterus,Miniopterus inflatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Gabon,Ogooue-Ivindo,Faucon Cave,1.116666667,13.33333333,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
genetic diversity of coronaviruses in miniopterus fuliginosus bats,Du et al.,Sci China Life Sci,2016,26,0,0,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Shaanxi,NA,NA,NA,NA,NA,NA,2011,NA,2013,NA,1,1,1,1,No
genetic diversity of coronaviruses in miniopterus fuliginosus bats,Du et al.,Sci China Life Sci,2016,26,0,0,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Shaanxi,NA,NA,NA,NA,NA,NA,2011,NA,2013,NA,1,1,1,1,No
genetic diversity of coronaviruses in miniopterus fuliginosus bats,Du et al.,Sci China Life Sci,2016,42,4,0.095238,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,alphacoronavirus,Lineage 1,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Henan,NA,NA,NA,NA,NA,NA,2011,NA,2013,NA,1,1,1,1,No
genetic diversity of coronaviruses in miniopterus fuliginosus bats,Du et al.,Sci China Life Sci,2016,42,4,0.095238,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,alphacoronavirus,Lineage 2,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Henan,NA,NA,NA,NA,NA,NA,2011,NA,2013,NA,1,1,1,1,No
genetic diversity of coronaviruses in miniopterus fuliginosus bats,Du et al.,Sci China Life Sci,2016,30,0,0,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Anhui,NA,NA,NA,NA,NA,NA,2011,NA,2013,NA,1,1,1,1,No
genetic diversity of coronaviruses in miniopterus fuliginosus bats,Du et al.,Sci China Life Sci,2016,30,3,0.1,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,alphacoronavirus,Lineage 2,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Anhui,NA,NA,NA,NA,NA,NA,2011,NA,2013,NA,1,1,1,1,No
genetic diversity of coronaviruses in miniopterus fuliginosus bats,Du et al.,Sci China Life Sci,2016,16,2,0.125,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,alphacoronavirus,Lineage 1,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Hubei,NA,NA,NA,NA,NA,NA,2011,NA,2013,NA,1,1,1,1,No
genetic diversity of coronaviruses in miniopterus fuliginosus bats,Du et al.,Sci China Life Sci,2016,16,3,0.1875,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,alphacoronavirus,Lineage 2,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Hubei,NA,NA,NA,NA,NA,NA,2011,NA,2013,NA,1,1,1,1,No
genetic diversity of coronaviruses in miniopterus fuliginosus bats,Du et al.,Sci China Life Sci,2016,8,0,0,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Zhejiang,NA,NA,NA,NA,NA,NA,2011,NA,2013,NA,1,1,1,1,No
genetic diversity of coronaviruses in miniopterus fuliginosus bats,Du et al.,Sci China Life Sci,2016,8,0,0,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Zhejiang,NA,NA,NA,NA,NA,NA,2011,NA,2013,NA,1,1,1,1,No
genetic diversity of coronaviruses in miniopterus fuliginosus bats,Du et al.,Sci China Life Sci,2016,18,0,0,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Jiangxi,NA,NA,NA,NA,NA,NA,2011,NA,2013,NA,1,1,1,1,No
genetic diversity of coronaviruses in miniopterus fuliginosus bats,Du et al.,Sci China Life Sci,2016,18,2,0.111111,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,alphacoronavirus,Lineage 2,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Jiangxi,NA,NA,NA,NA,NA,NA,2011,NA,2013,NA,1,1,1,1,No
genetic diversity of coronaviruses in miniopterus fuliginosus bats,Du et al.,Sci China Life Sci,2016,26,2,0.076923,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,alphacoronavirus,Lineage 1,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Fujian,NA,NA,NA,NA,NA,NA,2011,NA,2013,NA,1,1,1,1,No
genetic diversity of coronaviruses in miniopterus fuliginosus bats,Du et al.,Sci China Life Sci,2016,26,0,0,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Fujian,NA,NA,NA,NA,NA,NA,2011,NA,2013,NA,1,1,1,1,No
genetic diversity of coronaviruses in miniopterus fuliginosus bats,Du et al.,Sci China Life Sci,2016,8,0,0,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Yunnan,NA,NA,NA,NA,NA,NA,2011,NA,2013,NA,1,1,1,1,No
genetic diversity of coronaviruses in miniopterus fuliginosus bats,Du et al.,Sci China Life Sci,2016,8,0,0,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Yunnan,NA,NA,NA,NA,NA,NA,2011,NA,2013,NA,1,1,1,1,No
genetic diversity of coronaviruses in miniopterus fuliginosus bats,Du et al.,Sci China Life Sci,2016,20,2,0.1,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,alphacoronavirus,Lineage 1,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Guangdong,NA,NA,NA,NA,NA,NA,2011,NA,2013,NA,1,1,1,1,No
genetic diversity of coronaviruses in miniopterus fuliginosus bats,Du et al.,Sci China Life Sci,2016,20,6,0.3,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,alphacoronavirus,Lineage 2,NA,pooled,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Guangdong,NA,NA,NA,NA,NA,NA,2011,NA,2013,NA,1,1,1,1,No
detection of bat coronavirus and specific antibodies in chestnut bat (scotophilus kuhlii) population in central taiwan,Su BoGang et al.,Taiwan Veterinary Journal,2016,14,8,0.571429,Vespertilionidae,Scotophilus,Scotophilus kuhlii,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,NA,Changhua County,23.8475,120.3866667,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,No
detection of bat coronavirus and specific antibodies in chestnut bat (scotophilus kuhlii) population in central taiwan,Su BoGang et al.,Taiwan Veterinary Journal,2016,19,9,0.473684,Vespertilionidae,Scotophilus,Scotophilus kuhlii,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Taiwan,NA,Yulin County,23.56805556,120.2975,NA,2014,NA,NA,NA,NA,NA,1,1,1,1,No
detection of bat coronaviruses from miniopterus fuliginosus in japan,Shirato et al.,Virus Genes,2012,45,5,0.111111,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,Japan,Wakayama,NA,NA,NA,NA,NA,NA,2009,May,2010,July,0,0,0,1,Yes
detection of bat coronaviruses from miniopterus fuliginosus in japan,Shirato et al.,Virus Genes,2012,4,2,0.5,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Japan,Wakayama,NA,NA,NA,NA,NA,NA,2009,May,2010,July,1,0,0,0,Yes
detection of bat coronaviruses from miniopterus fuliginosus in japan,Shirato et al.,Virus Genes,2012,11,9,0.818182,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Japan,Wakayama,NA,NA,NA,NA,NA,NA,2009,May,2010,July,1,0,0,0,Yes
detection of bat coronaviruses from miniopterus fuliginosus in japan,Shirato et al.,Virus Genes,2012,45,1,0.022222,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,Other,S,intestine,tissue,Japan,Wakayama,NA,NA,NA,NA,NA,NA,2009,May,2010,July,0,0,0,1,Yes
detection of bat coronaviruses from miniopterus fuliginosus in japan,Shirato et al.,Virus Genes,2012,4,1,0.25,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,Other,S,"faecal, rectal, or anal",faeces,Japan,Wakayama,NA,NA,NA,NA,NA,NA,2009,May,2010,July,1,0,0,0,Yes
detection of bat coronaviruses from miniopterus fuliginosus in japan,Shirato et al.,Virus Genes,2012,11,5,0.454545,Miniopteridae,Miniopterus,Miniopterus fuliginosus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,Other,S,"faecal, rectal, or anal",faeces,Japan,Wakayama,NA,NA,NA,NA,NA,NA,2009,May,2010,July,1,0,0,0,Yes
detection of coronavirus genomes in moluccan naked-backed fruit bats in indonesia,Anindita et al.,Arch Virol,2015,17,3,0.176471,Pteropodidae,Dobsonia,Dobsonia moluccensis,1,betacoronavirus,NA,HKU9,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Indonesia,Gorontalo,Paguyaman,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,Yes
detection of coronavirus genomes in moluccan naked-backed fruit bats in indonesia,Anindita et al.,Arch Virol,2015,18,0,0,Pteropodidae,Acerodon,Acerodon celebensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Indonesia,Gorontalo,Paguyaman,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,Yes
detection of coronavirus genomes in moluccan naked-backed fruit bats in indonesia,Anindita et al.,Arch Virol,2015,2,0,0,Pteropodidae,Pteropus,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Indonesia,Gorontalo,Paguyaman,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,Yes
detection of coronavirus genomes in moluccan naked-backed fruit bats in indonesia,Anindita et al.,Arch Virol,2015,3,0,0,Pteropodidae,Pteropus,Pteropus vampyrus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Indonesia,East Java,Surabaya,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,Yes
detection of coronavirus genomes in moluccan naked-backed fruit bats in indonesia,Anindita et al.,Arch Virol,2015,19,0,0,Pteropodidae,Pteropus,Pteropus vampyrus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Indonesia,Yogyakarta Special,Yogyakarta,NA,NA,NA,2012,NA,NA,NA,NA,NA,1,1,1,1,Yes
detection of coronavirus genomes in moluccan naked-backed fruit bats in indonesia,Anindita et al.,Arch Virol,2015,7,0,0,Pteropodidae,Acerodon,Acerodon celebensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Indonesia,Gorontalo,Paguyaman,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
detection of coronavirus genomes in moluccan naked-backed fruit bats in indonesia,Anindita et al.,Arch Virol,2015,8,0,0,Pteropodidae,Pteropus,Pteropus vampyrus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Indonesia,Gorontalo,Paguyaman,NA,NA,NA,2013,NA,NA,NA,NA,NA,1,1,1,1,Yes
detection of coronaviruses in bats of various species in italy,Lelli et al.,Viruses,2013,68,6,0.088235,Vespertilionidae,Pipistrellus,Pipistrellus kuhlii,1,betacoronavirus,Merbecovirus,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled tissue,tissue,Italy,Lombarda and Emilia regions,NA,NA,NA,NA,NA,NA,2010,NA,2012,NA,1,0,0,0,Yes
detection of coronaviruses in bats of various species in italy,Lelli et al.,Viruses,2013,68,1,0.014706,Vespertilionidae,Pipistrellus,Pipistrellus kuhlii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled tissue,tissue,Italy,Lombarda and Emilia regions,NA,NA,NA,NA,NA,NA,2010,NA,2012,NA,1,0,0,0,Yes
detection of coronaviruses in bats of various species in italy,Lelli et al.,Viruses,2013,28,1,0.035714,Vespertilionidae,Pipistrellus,Pipistrellus kuhlii,1,betacoronavirus,Merbecovirus,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Lombarda and Emilia regions,NA,NA,NA,NA,NA,NA,2010,NA,2012,NA,1,0,0,0,Yes
detection of coronaviruses in bats of various species in italy,Lelli et al.,Viruses,2013,28,1,0.035714,Vespertilionidae,Pipistrellus,Pipistrellus kuhlii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Lombarda and Emilia regions,NA,NA,NA,NA,NA,NA,2010,NA,2012,NA,1,0,0,0,Yes
detection of coronaviruses in bats of various species in italy,Lelli et al.,Viruses,2013,48,1,0.020833,Vespertilionidae,Pipistrellus,NA,1,betacoronavirus,Merbecovirus,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled tissue,tissue,Italy,Lombarda and Emilia regions,NA,NA,NA,NA,NA,NA,2010,NA,2012,NA,1,0,0,0,Yes
detection of coronaviruses in bats of various species in italy,Lelli et al.,Viruses,2013,30,1,0.033333,Vespertilionidae,Pipistrellus,NA,NA,betacoronavirus,Sarbecovirus,Bat-CoV/Rhinolophus hipposideros/Italy/143488/2011,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Lombarda and Emilia regions,NA,NA,NA,NA,NA,NA,2010,NA,2012,NA,1,0,0,0,Yes
detection of coronaviruses in bats of various species in italy,Lelli et al.,Viruses,2013,2,0,0,Molossidae,Tadarida,Tadarida teniotis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled tissue,tissue,Italy,Lombarda and Emilia regions,NA,NA,NA,NA,NA,NA,2010,NA,2012,NA,1,0,0,0,Yes
detection of coronaviruses in bats of various species in italy,Lelli et al.,Viruses,2013,1,0,0,Molossidae,Tadarida,Tadarida teniotis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Lombarda and Emilia regions,NA,NA,NA,NA,NA,NA,2010,NA,2012,NA,1,0,0,0,Yes
detection of coronaviruses in bats of various species in italy,Lelli et al.,Viruses,2013,2,0,0,Vespertilionidae,Nyctalus,Nyctalus noctula,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled tissue,tissue,Italy,Lombarda and Emilia regions,NA,NA,NA,NA,NA,NA,2010,NA,2012,NA,1,0,0,0,Yes
detection of coronaviruses in bats of various species in italy,Lelli et al.,Viruses,2013,1,1,1,Vespertilionidae,Nyctalus,Nyctalus noctula,1,betacoronavirus,Merbecovirus,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Lombarda and Emilia regions,NA,NA,NA,NA,NA,NA,2010,NA,2012,NA,1,0,0,0,Yes
detection of coronaviruses in bats of various species in italy,Lelli et al.,Viruses,2013,1,1,1,Vespertilionidae,Pipistrellus,Pipistrellus savii,1,betacoronavirus,Merbecovirus,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled tissue,tissue,Italy,Lombarda and Emilia regions,NA,NA,NA,NA,NA,NA,2010,NA,2012,NA,1,0,0,0,Yes
detection of coronaviruses in bats of various species in italy,Lelli et al.,Viruses,2013,2,0,0,Vespertilionidae,Pipistrellus,Pipistrellus savii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Lombarda and Emilia regions,NA,NA,NA,NA,NA,NA,2010,NA,2012,NA,1,0,0,0,Yes
detection of coronaviruses in bats of various species in italy,Lelli et al.,Viruses,2013,3,0,0,Vespertilionidae,Plecotus,Plecotus auritus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled tissue,tissue,Italy,Lombarda and Emilia regions,NA,NA,NA,NA,NA,NA,2010,NA,2012,NA,1,0,0,0,Yes
detection of coronaviruses in bats of various species in italy,Lelli et al.,Viruses,2013,2,0,0,Vespertilionidae,Vespertilio,Vespertilio murinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled tissue,tissue,Italy,Lombarda and Emilia regions,NA,NA,NA,NA,NA,NA,2010,NA,2012,NA,1,0,0,0,Yes
detection of coronaviruses in bats of various species in italy,Lelli et al.,Viruses,2013,1,0,0,Vespertilionidae,Vespertilio,Vespertilio murinus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Lombarda and Emilia regions,NA,NA,NA,NA,NA,NA,2010,NA,2012,NA,1,0,0,0,Yes
detection of coronaviruses in bats of various species in italy,Lelli et al.,Viruses,2013,6,3,0.5,Rhinolophidae,Rhinolophus,Rhinolophus hipposideros,1,betacoronavirus,Sarbecovirus,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Italy,Lombarda and Emilia regions,NA,NA,NA,NA,NA,NA,2010,NA,2012,NA,1,0,0,0,Yes
the close genetic relationship of lineage d betacoronavirus from nigerian and kenyan straw-colored fruit bats (eidolon helvum) is consistent with the existence of a single epidemiological unit across sub-saharan africa,Leopardi et al.,Virus Genes,2016,79,6,0.075949,Pteropodidae,Eidolon,Eidolon helvum,1,betacoronavirus,Nobecovirus,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Nigeria,Oyo,"Agodi Garden, city of Ibadan",NA,NA,2,2011,NA,NA,NA,NA,NA,1,1,1,1,No
the persistent prevalence and evolution of cross-family recombinant coronavirus gccdc1 among a bat population: a two-year follow-up,Obameso et al.,Sci China Life Sci,2017,118,47,0.398305,Pteropodidae,Rousettus,Rousettus leschenaultii,1,betacoronavirus,NA,Ro-BatCoV GCCDC1,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp-1,"faecal, rectal, or anal",swab,China,Yunnan,Xishuangbanna Cave,NA,NA,NA,2014,May,NA,NA,NA,NA,0,0,0,1,No
the persistent prevalence and evolution of cross-family recombinant coronavirus gccdc1 among a bat population: a two-year follow-up,Obameso et al.,Sci China Life Sci,2017,270,70,0.259259,Pteropodidae,Rousettus,Rousettus leschenaultii,1,betacoronavirus,NA,Ro-BatCoV GCCDC1,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp-2,"faecal, rectal, or anal",swab,China,Yunnan,Xishuangbanna Cave,NA,NA,NA,2014,October,NA,NA,NA,NA,0,1,0,0,No
the persistent prevalence and evolution of cross-family recombinant coronavirus gccdc1 among a bat population: a two-year follow-up,Obameso et al.,Sci China Life Sci,2017,180,64,0.355556,Pteropodidae,Rousettus,Rousettus leschenaultii,1,betacoronavirus,NA,Ro-BatCoV GCCDC1,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp-2,"faecal, rectal, or anal",swab,China,Yunnan,Xishuangbanna Cave,NA,NA,NA,2015,October,NA,NA,NA,NA,0,1,0,0,No
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,2,1,0.5,Pteropodidae,Cynopterus,Cynopterus brachyotis,1,betacoronavirus,NA,bat-CoV/Philippines/Diliman1525G2/2008,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,NA,A,NA,NA,NA,2009,March,NA,NA,NA,NA,0,0,0,1,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,10,5,0.5,Pteropodidae,Ptenochirus,Ptenochirus jagori,1,betacoronavirus,NA,BtCoV/Philippines/Diliman1525G2/2008 and/or BtCoV2265/Philippines/2010,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,NA,A,NA,NA,NA,2009,March,NA,NA,NA,NA,0,0,0,1,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,8,2,0.25,Emballonuridae,Emballonura,Emballonura alecto,1,betacoronavirus,NA,BtCoV2265/Philippines/2010,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,NA,A,NA,NA,NA,2009,March,NA,NA,NA,NA,0,0,0,1,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,2,1,0.5,Rhinolophidae,Rhinolophus,Rhinolophus rufus,1,betacoronavirus,NA,BtCoV2265/Philippines/2010,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,NA,A,NA,NA,NA,2009,March,NA,NA,NA,NA,0,0,0,1,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,6,0,0,Pteropodidae,Haplonycteris,Haplonycteris fischeri,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,NA,A,NA,NA,NA,2009,March,NA,NA,NA,NA,0,0,0,1,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,2,0,0,Pteropodidae,Macroglossus,Macroglossus minimus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,NA,A,NA,NA,NA,2009,March,NA,NA,NA,NA,0,0,0,1,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,6,1,0.166667,Pteropodidae,Cynopterus,Cynopterus brachyotis,1,betacoronavirus,NA,bat-CoV/Philippines/Diliman1525G2/2008,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,NA,B,NA,NA,NA,2009,March,NA,NA,NA,NA,0,0,0,1,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,8,1,0.125,Pteropodidae,Ptenochirus,Ptenochirus jagori,1,betacoronavirus,NA,BtCoV/Philippines/Diliman1525G2/2008 and/or BtCoV2265/Philippines/2010,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,NA,B,NA,NA,NA,2009,March,NA,NA,NA,NA,0,0,0,1,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,5,1,0.2,Pteropodidae,Rousettus,Rousettus amplexicaudatus,1,betacoronavirus,NA,BtCoV2265/Philippines/2010,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,intestine,tissue,Philippines,NA,B,NA,NA,NA,2009,March,NA,NA,NA,NA,0,0,0,1,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,43,16,0.372093,Pteropodidae,Cynopterus,Cynopterus brachyotis,1,betacoronavirus,NA,bat-CoV/Philippines/Diliman1525G2/2008,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Philippines,NA,C,NA,NA,NA,2010,August,NA,NA,NA,NA,1,0,0,0,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,11,1,0.090909,Pteropodidae,Ptenochirus,Ptenochirus jagori,1,betacoronavirus,NA,BtCoV/Philippines/Diliman1525G2/2008 and/or BtCoV2265/Philippines/2010,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Philippines,NA,C,NA,NA,NA,2010,August,NA,NA,NA,NA,1,0,0,0,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,1,0,0,Pteropodidae,Rousettus,Rousettus amplexicaudatus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Philippines,NA,C,NA,NA,NA,2010,August,NA,NA,NA,NA,1,0,0,0,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,3,0,0,Hipposideridae,Hipposideros,Hipposideros diadema,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Philippines,NA,C,NA,NA,NA,2010,August,NA,NA,NA,NA,1,0,0,0,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,28,11,0.392857,Pteropodidae,Cynopterus,Cynopterus brachyotis,1,betacoronavirus,NA,bat-CoV/Philippines/Diliman1525G2/2008,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Philippines,NA,D,NA,NA,NA,2010,August,NA,NA,NA,NA,1,0,0,0,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,21,4,0.190476,Pteropodidae,Ptenochirus,Ptenochirus jagori,1,betacoronavirus,NA,BtCoV/Philippines/Diliman1525G2/2008 and/or BtCoV2265/Philippines/2010,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Philippines,NA,D,NA,NA,NA,2010,August,NA,NA,NA,NA,1,0,0,0,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,1,1,1,Hipposideridae,Hipposideros,Hipposideros diadema,1,alphacoronavirus,NA,BtCoV2231/Philippines/2010,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Philippines,NA,D,NA,NA,NA,2010,August,NA,NA,NA,NA,1,0,0,0,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,4,2,0.5,Pteropodidae,Cynopterus,Cynopterus brachyotis,1,betacoronavirus,NA,bat-CoV/Philippines/Diliman1525G2/2008,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Philippines,NA,E,NA,NA,NA,2011,May,NA,NA,NA,NA,0,0,0,1,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,17,5,0.294118,Pteropodidae,Ptenochirus,Ptenochirus jagori,1,betacoronavirus,NA,BtCoV/Philippines/Diliman1525G2/2008 and/or BtCoV2265/Philippines/2010,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Philippines,NA,E,NA,NA,NA,2011,May,NA,NA,NA,NA,0,0,0,1,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,1,1,1,Pteropodidae,Macroglossus,Macroglossus minimus,1,betacoronavirus,NA,BtCoV2265/Philippines/2010,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Philippines,NA,E,NA,NA,NA,2011,May,NA,NA,NA,NA,0,0,0,1,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,2,1,0.5,Pteropodidae,Cynopterus,Cynopterus brachyotis,1,betacoronavirus,NA,NA,single,cross-sectional,Western Blot,Western Blot,NA,Other,Recombinant BtCoV nucleocapsid (N) protein used as antigen,intestine,tissue,Philippines,NA,A,NA,NA,NA,2009,March,NA,NA,NA,NA,0,0,0,1,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,10,10,1,Pteropodidae,Ptenochirus,Ptenochirus jagori,1,betacoronavirus,NA,NA,single,cross-sectional,Western Blot,Western Blot,NA,Other,Recombinant BtCoV nucleocapsid (N) protein used as antigen,intestine,tissue,Philippines,NA,A,NA,NA,NA,2009,March,NA,NA,NA,NA,0,0,0,1,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,8,5,0.625,Emballonuridae,Emballonura,Emballonura alecto,1,betacoronavirus,NA,NA,single,cross-sectional,Western Blot,Western Blot,NA,Other,Recombinant BtCoV nucleocapsid (N) protein used as antigen,intestine,tissue,Philippines,NA,A,NA,NA,NA,2009,March,NA,NA,NA,NA,0,0,0,1,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,2,2,1,Rhinolophidae,Rhinolophus,Rhinolophus rufus,1,betacoronavirus,NA,NA,single,cross-sectional,Western Blot,Western Blot,NA,Other,Recombinant BtCoV nucleocapsid (N) protein used as antigen,intestine,tissue,Philippines,NA,A,NA,NA,NA,2009,March,NA,NA,NA,NA,0,0,0,1,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,6,1,0.166667,Pteropodidae,Haplonycteris,Haplonycteris fischeri,1,betacoronavirus,NA,NA,single,cross-sectional,Western Blot,Western Blot,NA,Other,Recombinant BtCoV nucleocapsid (N) protein used as antigen,intestine,tissue,Philippines,NA,A,NA,NA,NA,2009,March,NA,NA,NA,NA,0,0,0,1,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,2,1,0.5,Pteropodidae,Macroglossus,Macroglossus minimus,1,betacoronavirus,NA,NA,single,cross-sectional,Western Blot,Western Blot,NA,Other,Recombinant BtCoV nucleocapsid (N) protein used as antigen,intestine,tissue,Philippines,NA,A,NA,NA,NA,2009,March,NA,NA,NA,NA,0,0,0,1,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,6,4,0.666667,Pteropodidae,Cynopterus,Cynopterus brachyotis,1,betacoronavirus,NA,NA,single,cross-sectional,Western Blot,Western Blot,NA,Other,Recombinant BtCoV nucleocapsid (N) protein used as antigen,intestine,tissue,Philippines,NA,B,NA,NA,NA,2009,March,NA,NA,NA,NA,0,0,0,1,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,8,6,0.75,Pteropodidae,Ptenochirus,Ptenochirus jagori,1,betacoronavirus,NA,NA,single,cross-sectional,Western Blot,Western Blot,NA,Other,Recombinant BtCoV nucleocapsid (N) protein used as antigen,intestine,tissue,Philippines,NA,B,NA,NA,NA,2009,March,NA,NA,NA,NA,0,0,0,1,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,5,4,0.8,Pteropodidae,Rousettus,Rousettus amplexicaudatus,1,betacoronavirus,NA,NA,single,cross-sectional,Western Blot,Western Blot,NA,Other,Recombinant BtCoV nucleocapsid (N) protein used as antigen,intestine,tissue,Philippines,NA,B,NA,NA,NA,2009,March,NA,NA,NA,NA,0,0,0,1,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,43,32,0.744186,Pteropodidae,Cynopterus,Cynopterus brachyotis,1,betacoronavirus,NA,NA,single,cross-sectional,Western Blot,Western Blot,NA,Other,Recombinant BtCoV nucleocapsid (N) protein used as antigen,"faecal, rectal, or anal",faeces,Philippines,NA,C,NA,NA,NA,2010,August,NA,NA,NA,NA,1,0,0,0,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,11,6,0.545455,Pteropodidae,Ptenochirus,Ptenochirus jagori,1,betacoronavirus,NA,NA,single,cross-sectional,Western Blot,Western Blot,NA,Other,Recombinant BtCoV nucleocapsid (N) protein used as antigen,"faecal, rectal, or anal",faeces,Philippines,NA,C,NA,NA,NA,2010,August,NA,NA,NA,NA,1,0,0,0,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,1,0,0,Pteropodidae,Rousettus,Rousettus amplexicaudatus,1,genus not specified,NA,NA,single,cross-sectional,Western Blot,Western Blot,NA,Other,Recombinant BtCoV nucleocapsid (N) protein used as antigen,"faecal, rectal, or anal",faeces,Philippines,NA,C,NA,NA,NA,2010,August,NA,NA,NA,NA,1,0,0,0,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,3,0,0,Hipposideridae,Hipposideros,Hipposideros diadema,1,genus not specified,NA,NA,single,cross-sectional,Western Blot,Western Blot,NA,Other,Recombinant BtCoV nucleocapsid (N) protein used as antigen,"faecal, rectal, or anal",faeces,Philippines,NA,C,NA,NA,NA,2010,August,NA,NA,NA,NA,1,0,0,0,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,28,17,0.607143,Pteropodidae,Cynopterus,Cynopterus brachyotis,1,betacoronavirus,NA,NA,single,cross-sectional,Western Blot,Western Blot,NA,Other,Recombinant BtCoV nucleocapsid (N) protein used as antigen,"faecal, rectal, or anal",faeces,Philippines,NA,D,NA,NA,NA,2010,August,NA,NA,NA,NA,1,0,0,0,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,21,14,0.666667,Pteropodidae,Ptenochirus,Ptenochirus jagori,1,betacoronavirus,NA,NA,single,cross-sectional,Western Blot,Western Blot,NA,Other,Recombinant BtCoV nucleocapsid (N) protein used as antigen,"faecal, rectal, or anal",faeces,Philippines,NA,D,NA,NA,NA,2010,August,NA,NA,NA,NA,1,0,0,0,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,1,0,0,Hipposideridae,Hipposideros,Hipposideros diadema,1,genus not specified,NA,NA,single,cross-sectional,Western Blot,Western Blot,NA,Other,Recombinant BtCoV nucleocapsid (N) protein used as antigen,"faecal, rectal, or anal",faeces,Philippines,NA,D,NA,NA,NA,2010,August,NA,NA,NA,NA,1,0,0,0,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,4,4,1,Pteropodidae,Cynopterus,Cynopterus brachyotis,1,betacoronavirus,NA,NA,single,cross-sectional,Western Blot,Western Blot,NA,Other,Recombinant BtCoV nucleocapsid (N) protein used as antigen,"faecal, rectal, or anal",faeces,Philippines,NA,E,NA,NA,NA,2011,May,NA,NA,NA,NA,0,0,0,1,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,17,12,0.705882,Pteropodidae,Ptenochirus,Ptenochirus jagori,1,betacoronavirus,NA,NA,single,cross-sectional,Western Blot,Western Blot,NA,Other,Recombinant BtCoV nucleocapsid (N) protein used as antigen,"faecal, rectal, or anal",faeces,Philippines,NA,E,NA,NA,NA,2011,May,NA,NA,NA,NA,0,0,0,1,Yes
genomic and serological detection of bat coronavirus from bats in the philippines,Tsuda et al.,Arch Virol,2012,1,0,0,Pteropodidae,Macroglossus,Macroglossus minimus,1,genus not specified,NA,NA,single,cross-sectional,Western Blot,Western Blot,NA,Other,Recombinant BtCoV nucleocapsid (N) protein used as antigen,"faecal, rectal, or anal",faeces,Philippines,NA,E,NA,NA,NA,2011,May,NA,NA,NA,NA,0,0,0,1,Yes
genomic characterization and infectivity of a novel sars-like coronavirus in chinese bats,Hu et al.,Emerg Microbes Infect,2018,45,30,0.666667,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,pancoronavirus nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,China,Zhejiang Province,"Dinghai, Zhoushan city",NA,NA,NA,2015,July,NA,NA,NA,NA,1,0,0,0,Yes
genomic characterization and infectivity of a novel sars-like coronavirus in chinese bats,Hu et al.,Emerg Microbes Infect,2018,120,30,0.25,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,pancoronavirus nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,China,Zhejiang Province,"Dinghai, Zhoushan city",NA,NA,NA,2016,January,NA,NA,NA,NA,0,0,1,0,Yes
genomic characterization and infectivity of a novel sars-like coronavirus in chinese bats,Hu et al.,Emerg Microbes Infect,2018,84,18,0.214286,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,pancoronavirus nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,China,Zhejiang Province,"Daishan, Zhoushan city",NA,NA,NA,2016,October,NA,NA,NA,NA,0,1,0,0,Yes
genomic characterization and infectivity of a novel sars-like coronavirus in chinese bats,Hu et al.,Emerg Microbes Infect,2018,85,11,0.129412,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,betacoronavirus,Sarbecovirus,NA,single,cross-sectional,PCR,pancoronavirus nested RT-PCR,multiple,RdRp,RdRp,intestine,tissue,China,Zhejiang Province,"Dinghai, Zhoushan city",NA,NA,NA,2017,February,NA,NA,NA,NA,0,0,1,0,Yes
virome analysis for identification of novel mammalian viruses in bats from southeast china,Hu et al.,Sci Rep,2017,45,5,0.111111,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,nested PCR,multiple,RdRp,RdRp,pooled tissue,tissue,China,Zhejiang,Zhoushan,NA,NA,NA,2015,NA,NA,July,NA,August,1,0,0,0,Yes
virome analysis for identification of novel mammalian viruses in bats from southeast china,Hu et al.,Sci Rep,2017,45,2,0.044444,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested PCR,multiple,RdRp,RdRp,pooled tissue,tissue,China,Zhejiang,Zhoushan,NA,NA,NA,2015,NA,NA,July,NA,August,1,0,0,0,Yes
virome analysis for identification of novel mammalian viruses in bats from southeast china,Hu et al.,Sci Rep,2017,25,0,0,Vespertilionidae,Myotis,Myotis formosus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested PCR,multiple,RdRp,RdRp,pooled tissue,tissue,China,Zhejiang,Daishan,NA,NA,NA,NA,NA,NA,July,NA,August,1,0,0,0,Yes
virome analysis for identification of novel mammalian viruses in bats from southeast china,Hu et al.,Sci Rep,2017,14,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested PCR,multiple,RdRp,RdRp,pooled tissue,tissue,China,Zhejiang,Daishan,NA,NA,NA,NA,NA,NA,July,NA,August,1,0,0,0,Yes
virome analysis for identification of novel mammalian viruses in bats from southeast china,Hu et al.,Sci Rep,2017,10,0,0,Vespertilionidae,Myotis,Myotis davidii,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested PCR,multiple,RdRp,RdRp,pooled tissue,tissue,China,Zhejiang,Daishan,NA,NA,NA,NA,NA,NA,July,NA,August,1,0,0,0,Yes
virome analysis for identification of novel mammalian viruses in bats from southeast china,Hu et al.,Sci Rep,2017,19,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested PCR,multiple,RdRp,RdRp,pooled tissue,tissue,China,Fujian,Xiamen,NA,NA,NA,NA,NA,NA,July,NA,August,1,0,0,0,Yes
virome analysis for identification of novel mammalian viruses in bats from southeast china,Hu et al.,Sci Rep,2017,8,0,0,Vespertilionidae,Scotophilus,Scotophilus kuhlii,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested PCR,multiple,RdRp,RdRp,pooled tissue,tissue,China,Fujian,Xiamen,NA,NA,NA,NA,NA,NA,July,NA,August,1,0,0,0,Yes
virome analysis for identification of novel mammalian viruses in bats from southeast china,Hu et al.,Sci Rep,2017,44,2,0.045455,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested PCR,multiple,RdRp,RdRp,intestine,tissue,China,Fujian,Changle,NA,NA,NA,NA,NA,NA,July,NA,August,1,0,0,0,Yes
virome analysis for identification of novel mammalian viruses in bats from southeast china,Hu et al.,Sci Rep,2017,44,1,0.022727,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,nested PCR,multiple,RdRp,RdRp,intestine,tissue,China,Fujian,Changle,NA,NA,NA,NA,NA,NA,July,NA,August,1,0,0,0,Yes
virome analysis for identification of novel mammalian viruses in bats from southeast china,Hu et al.,Sci Rep,2017,11,2,0.181818,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested PCR,multiple,RdRp,RdRp,intestine,tissue,China,Fujian,Changle,NA,NA,NA,NA,NA,NA,July,NA,August,1,0,0,0,Yes
virome analysis for identification of novel mammalian viruses in bats from southeast china,Hu et al.,Sci Rep,2017,35,1,0.028571,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested PCR,multiple,RdRp,RdRp,intestine,tissue,China,Fujian,Shishi,NA,NA,NA,NA,NA,NA,July,NA,August,1,0,0,0,Yes
virome analysis for identification of novel mammalian viruses in bats from southeast china,Hu et al.,Sci Rep,2017,35,3,0.085714,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,nested PCR,multiple,RdRp,RdRp,intestine,tissue,China,Fujian,Shishi,NA,NA,NA,NA,NA,NA,July,NA,August,1,0,0,0,Yes
virome analysis for identification of novel mammalian viruses in bats from southeast china,Hu et al.,Sci Rep,2017,24,0,0,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested PCR,multiple,RdRp,RdRp,pooled tissue,tissue,China,Fujian,Lianjiang,NA,NA,NA,NA,NA,NA,July,NA,August,1,0,0,0,Yes
virus survey in populations of two subspecies of bent-winged bats (miniopterus orianae bassanii and oceanensis) in south-eastern australia reveals a high prevalence of diverse herpesviruses,Holz et al.,Plos One,2018,32,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,NA,single,cross-sectional,PCR,degenerate concensus PCR,multiple,RdRp,RdRp,pooled tissue,pooled,Australia,Victoria,Allansford,-38.3861,142.5931,NA,2015,September,NA,NA,NA,NA,0,1,0,0,No
virus survey in populations of two subspecies of bent-winged bats (miniopterus orianae bassanii and oceanensis) in south-eastern australia reveals a high prevalence of diverse herpesviruses,Holz et al.,Plos One,2018,155,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,NA,single,cross-sectional,PCR,degenerate concensus PCR,multiple,RdRp,RdRp,pooled tissue,pooled,Australia,South Australia,Naracoorte,NA,NA,NA,2016,January,NA,NA,NA,NA,0,0,1,0,No
virus survey in populations of two subspecies of bent-winged bats (miniopterus orianae bassanii and oceanensis) in south-eastern australia reveals a high prevalence of diverse herpesviruses,Holz et al.,Plos One,2018,26,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,NA,single,cross-sectional,PCR,degenerate concensus PCR,multiple,RdRp,RdRp,pooled tissue,pooled,Australia,Victoria,Christmas Hill,-37.6515,145.3173,NA,2015,September,NA,NA,NA,NA,0,1,0,0,No
viral diversity of microbats within the south west botanical province of western australia,Prada et al.,Viruses,2019,232,59,0.25431,Vespertilionidae,Chalinolobus,Chalinolobus gouldii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,"nested RT-PCR,semi-nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Australia,NA,"MtG, CDR, CoC, Dry, Dwe, Koj, Per",NA,NA,NA,NA,NA,2016,November,2018,April,1,0,0,0,No
viral diversity of microbats within the south west botanical province of western australia,Prada et al.,Viruses,2019,45,17,0.377778,Vespertilionidae,Chalinolobus,Chalinolobus morio,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,"nested RT-PCR,semi-nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Australia,NA,"MtG, Bla, CDR, Coc, Don, Dry, Dwe, Frk, Met, Twi, Two",NA,NA,NA,NA,NA,2016,November,2018,April,1,0,0,0,No
viral diversity of microbats within the south west botanical province of western australia,Prada et al.,Viruses,2019,51,2,0.039216,Vespertilionidae,Nyctophilus,Nyctophilus geoffroyi,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,"nested RT-PCR,semi-nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Australia,NA,"Mtg, Bla, CDR, Coc, Don, Dry, Dwe, Ger, Per, Two",NA,NA,NA,NA,NA,2016,November,2018,April,1,0,0,0,No
viral diversity of microbats within the south west botanical province of western australia,Prada et al.,Viruses,2019,56,2,0.035714,Vespertilionidae,Nyctophilus,Nyctophilus gouldi,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,"nested RT-PCR,semi-nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Australia,NA,"Bla, Don, Dry, we, Per, Two",NA,NA,NA,NA,NA,2016,November,2018,April,1,0,0,0,No
viral diversity of microbats within the south west botanical province of western australia,Prada et al.,Viruses,2019,10,0,0,Vespertilionidae,Nyctophilus,Nyctophilus timoriensis,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,"nested RT-PCR,semi-nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Australia,NA,"Bla, CDR, Dry, Dwe, Frk",NA,NA,NA,NA,NA,2016,November,2018,April,1,0,0,0,No
viral diversity of microbats within the south west botanical province of western australia,Prada et al.,Viruses,2019,9,0,0,Vespertilionidae,Scotorepens,Scotorepens balstoni,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,"nested RT-PCR,semi-nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Australia,NA,"MtG, CDR",NA,NA,NA,NA,NA,2016,November,2018,April,1,0,0,0,No
viral diversity of microbats within the south west botanical province of western australia,Prada et al.,Viruses,2019,141,17,0.120567,Vespertilionidae,Vespadelus,Vespadelus regulus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,"nested RT-PCR,semi-nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Australia,NA,"Bla, Coc, Don, Dry, Dwe, Frk, met, Per, Twi, Two",NA,NA,NA,NA,NA,2016,November,2018,April,1,0,0,0,No
viral diversity of microbats within the south west botanical province of western australia,Prada et al.,Viruses,2019,9,0,0,Molossidae,Tadarida,Tadarida australis,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,"nested RT-PCR,semi-nested RT-PCR",multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Australia,NA,CDR,NA,NA,NA,NA,NA,2016,November,2018,April,1,0,0,0,No
wild animal surveillance for coronavirus hku1 and potential variants of other coronaviruses,Yuen et al.,Hong Kong Med J,2012,118,23,0.194915,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,Sarbecovirus,NA,pooled,cross-sectional,PCR,"nested RT-PCR,semi-nested RT-PCR",multiple,RdRp,RdRp,pooled swabs/samples,swab,China,Hong Kong,various,NA,NA,NA,NA,NA,2005,December,2007,December,1,1,1,1,No
wild animal surveillance for coronavirus hku1 and potential variants of other coronaviruses,Yuen et al.,Hong Kong Med J,2012,118,0,0,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,Embecovirus,HKU1,pooled,cross-sectional,PCR,"nested RT-PCR,semi-nested RT-PCR",multiple,RdRp,RdRp,pooled swabs/samples,swab,China,Hong Kong,various,NA,NA,NA,NA,NA,2005,December,2007,December,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,1,0,0,Hipposideridae,Hipposideros,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Conakry,Conakry,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,4,1,0.25,Hipposideridae,Hipposideros,NA,NA,betacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Guinea,Conakry,Bate-Nafadji,NA,NA,NA,2016,September,NA,NA,NA,NA,0,1,0,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,1,0,0,Hipposideridae,Hipposideros,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Kankan,Kankan,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,13,1,0.076923,Hipposideridae,Hipposideros,NA,NA,alphacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Guinea,Kankan,Kindia,NA,NA,NA,2016,May,NA,NA,NA,NA,0,0,0,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,13,1,0.076923,Hipposideridae,Hipposideros,NA,NA,alphacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Guinea,Kankan,Kindia,NA,NA,NA,2016,May,NA,NA,NA,NA,0,0,0,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,13,1,0.076923,Hipposideridae,Hipposideros,NA,NA,alphacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Kankan,Kindia,NA,NA,NA,2016,May,NA,NA,NA,NA,0,0,0,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,13,1,0.076923,Hipposideridae,Hipposideros,NA,NA,betacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Guinea,Kankan,Kindia,NA,NA,NA,2016,May,NA,NA,NA,NA,0,0,0,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,13,1,0.076923,Hipposideridae,Hipposideros,NA,NA,alphacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Guinea,Kankan,Kindia,NA,NA,NA,2016,May,NA,NA,NA,NA,0,0,0,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,13,1,0.076923,Hipposideridae,Hipposideros,NA,NA,alphacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Guinea,Kankan,Kindia,NA,NA,NA,2016,May,NA,NA,NA,NA,0,0,0,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,1,0,0,Hipposideridae,Hipposideros,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Kindia,Madina Oula,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,1,0,0,Hipposideridae,Hipposideros,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Koundara,Youkounkoun,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,3,0,0,Molossidae,Chaerephon,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Kindia,Madina Oula,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,10,0,0,Molossidae,Mops,Mops condylurus,1,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Gueckedou,Guingan,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,2,1,0.5,Nycteridae,Nycteris,NA,NA,betacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Guinea,Conakry,Bate-Nafadji,NA,NA,NA,2016,September,NA,NA,NA,NA,0,1,0,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,1,0,0,Nycteridae,Nycteris,NA,NA,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Gueckedou,Guingan,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,5,1,0.2,Rhinolophidae,Rhinolophus,Rhinolophus darlingi,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Guinea,Kankan,Kankan,NA,NA,NA,NA,September,NA,NA,NA,NA,0,1,0,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,5,1,0.2,Rhinolophidae,Rhinolophus,Rhinolophus darlingi,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Guinea,Kankan,Kankan,NA,NA,NA,NA,September,NA,NA,NA,NA,0,1,0,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,2,0,0,Vespertilionidae,Scotophilus,Scotophilus leucogaster,1,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Kindia,Madina Oula,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,1,0,0,Vespertilionidae,Scotophilus,Scotophilus leucogaster,1,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Gueckedou,Guingan,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,6,1,0.166667,Pteropodidae,Eidolon,Eidolon helvum,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Guinea,Conakry,Conakry,NA,NA,NA,2016,April,NA,NA,NA,NA,0,0,0,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,6,1,0.166667,Pteropodidae,Eidolon,Eidolon helvum,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Guinea,Conakry,Conakry,NA,NA,NA,2016,April,NA,NA,NA,NA,0,0,0,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,6,1,0.166667,Pteropodidae,Eidolon,Eidolon helvum,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Guinea,Conakry,Conakry,NA,NA,NA,2016,April,NA,NA,NA,NA,0,0,0,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,1,0,0,Pteropodidae,Eidolon,Eidolon helvum,1,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Koundara,Sareboido,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,2,1,0.5,Pteropodidae,Eidolon,Eidolon helvum,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Guinea,Macenta,Macenta,NA,NA,NA,2016,December,NA,NA,NA,NA,0,0,1,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,48,1,0.020833,Pteropodidae,Epomophorus,Epomophorus gambianus,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Guinea,Conakry,Conakry,NA,NA,NA,2016,February,NA,NA,NA,NA,0,0,1,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,48,1,0.020833,Pteropodidae,Epomophorus,Epomophorus gambianus,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Guinea,Conakry,Conakry,NA,NA,NA,2016,February,NA,NA,NA,NA,0,0,1,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,48,1,0.020833,Pteropodidae,Epomophorus,Epomophorus gambianus,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Guinea,Conakry,Conakry,NA,NA,NA,2016,February,NA,NA,NA,NA,0,0,1,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,2,0,0,Pteropodidae,Epomophorus,Epomophorus gambianus,1,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Conakry,Bate-Nafadji,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,5,0,0,Pteropodidae,Epomophorus,Epomophorus gambianus,1,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Kankan,Kankan,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,2,0,0,Pteropodidae,Epomophorus,Epomophorus gambianus,1,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Kindia,Madina Oula,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,3,1,0.333333,Pteropodidae,Epomophorus,Epomophorus gambianus,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Guinea,Koundara,Youkounkoun,NA,NA,NA,2016,July,NA,NA,NA,NA,1,0,0,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,14,1,0.071429,Pteropodidae,Epomophorus,Epomophorus gambianus,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Guinea,Koundara,Sareboido,NA,NA,NA,2016,July,NA,NA,NA,NA,1,0,0,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,2,0,0,Pteropodidae,Epomophorus,Epomophorus gambianus,1,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Geuckdou,Guingan,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,11,0,0,Pteropodidae,Epomophorus,Epomophorus gambianus,1,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Mamou,Oure-Kaba,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,3,0,0,Pteropodidae,Epomops,Epomops buettikoferi,1,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Geuckdou,Tekoulo,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,1,0,0,Pteropodidae,Hypsignathus,Hypsignathus monstrosus,1,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Geuckdou,Guingan,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,5,0,0,Pteropodidae,Hypsignathus,Hypsignathus monstrosus,1,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Macenta,Macenta,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,8,0,0,Pteropodidae,Myonycteris,Myonycteris angolensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Kindia,Madina Oula,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,6,0,0,Pteropodidae,Myonycteris,Myonycteris angolensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Kindia,Sougueta,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,13,1,0.076923,Pteropodidae,Myonycteris,Myonycteris angolensis,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Geuckdou,Guingan,NA,NA,NA,2016,July,NA,NA,NA,NA,1,0,0,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,13,1,0.076923,Pteropodidae,Myonycteris,Myonycteris angolensis,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Geuckdou,Guingan,NA,NA,NA,2016,July,NA,NA,NA,NA,1,0,0,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,15,1,0.066667,Pteropodidae,Myonycteris,Myonycteris angolensis,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Guinea,Mamou,Konoure,NA,NA,NA,2017,January,NA,NA,NA,NA,0,0,1,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,4,0,0,Pteropodidae,Micropteropus,Micropteropus pusillus,1,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Conakry,Conakry,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,1,0,0,Pteropodidae,Micropteropus,Micropteropus pusillus,1,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Kankan,Kankan,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,1,0,0,Pteropodidae,Micropteropus,Micropteropus pusillus,1,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Geuckdou,Guingan,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,1,1,1,Pteropodidae,Nanonycteris,Nanonycteris veldkampii,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Guinea,Geuckdou,Tekoulo,NA,NA,NA,2016,December,NA,NA,NA,NA,0,0,1,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,38,1,0.026316,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Guinea,Kindia,Madina Oula,NA,NA,NA,2016,October,NA,NA,NA,NA,0,1,0,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,38,1,0.026316,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Guinea,Kindia,Madina Oula,NA,NA,NA,2016,October,NA,NA,NA,NA,0,1,0,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,29,1,0.034483,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Guinea,Kindia,Sougueta,NA,NA,NA,2016,November,NA,NA,NA,NA,0,1,0,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,29,1,0.034483,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Guinea,Kindia,Sougueta,NA,NA,NA,2016,November,NA,NA,NA,NA,0,1,0,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,2,0,0,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Koundara,Youkounkoun,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,7,1,0.142857,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Guinea,Geuckdou,Guingan,NA,NA,NA,2016,July,NA,NA,NA,NA,1,0,0,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,1,0,0,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,genus not specified,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,Guinea,Geuckdou,Tekoulo,NA,NA,NA,NA,NA,2016,February,2017,January,1,1,1,1,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,41,1,0.02439,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Guinea,Macenta,Termessadou-Dibo,NA,NA,NA,2016,December,NA,NA,NA,NA,0,0,1,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,41,1,0.02439,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,coinfection,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Guinea,Macenta,Termessadou-Dibo,NA,NA,NA,2016,December,NA,NA,NA,NA,0,0,1,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,41,1,0.02439,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Guinea,Macenta,Termessadou-Dibo,NA,NA,NA,2016,December,NA,NA,NA,NA,0,0,1,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,41,1,0.02439,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Guinea,Macenta,Termessadou-Dibo,NA,NA,NA,2016,December,NA,NA,NA,NA,0,0,1,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,41,1,0.02439,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Guinea,Macenta,Termessadou-Dibo,NA,NA,NA,2016,December,NA,NA,NA,NA,0,0,1,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,41,1,0.02439,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Guinea,Macenta,Termessadou-Dibo,NA,NA,NA,2016,December,NA,NA,NA,NA,0,0,1,0,No
"wide diversity of coronaviruses in frugivorous and insectivorous bat species: a pilot study in guinea, west africa",Lacroix et al.,Viruses,2020,2,1,0.5,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,broadly reactive nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Guinea,Macent,Macenta,NA,NA,NA,2016,December,NA,NA,NA,NA,0,0,1,0,No
white-nose syndrome is associated with increased replication of a naturally persisting coronaviruses in bats,Davy et al.,Sci Rep,2018,63,7,0.111111,Vespertilionidae,Myotis,Myotis lucifugus,1,alphacoronavirus,Colacovirus,Myl-CoV,pooled,cross-sectional,PCR,"RT-qPCR,semi-nested PCR",multiple,RdRp,RdRp,intestine,tissue,Canada,Manitoba,hibernacula,NA,NA,NA,2017,January,NA,NA,NA,NA,0,0,1,0,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,243,78,0.320988,Rhinolophidae,Rhinolophus,Rhinolophus euryale,1,betacoronavirus,Sarbecovirus,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,"Elenas Cave, Bratanova Cave (April), Big Vupa, Kaleto Cave, Roman Horse Cave (April), Maharata Cave Area (April)",NA,NA,NA,2008,"April,September",NA,NA,NA,NA,0,1,0,1,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,243,8,0.032922,Rhinolophidae,Rhinolophus,Rhinolophus euryale,1,alphacoronavirus,NA,HKU2 related,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,"Elenas Cave, Bratanova Cave (April), Big Vupa, Kaleto Cave, Roman Horse Cave (April), Maharata Cave Area (April)",NA,NA,NA,2008,"April,September",NA,NA,NA,NA,0,1,0,1,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,243,25,0.102881,Rhinolophidae,Rhinolophus,Rhinolophus euryale,1,alphacoronavirus,NA,BB98-15,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,"Elenas Cave, Bratanova Cave (April), Big Vupa, Kaleto Cave, Roman Horse Cave (April), Maharata Cave Area (April)",NA,NA,NA,2008,"April,September",NA,NA,NA,NA,0,1,0,1,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,82,13,0.158537,Rhinolophidae,Rhinolophus,Rhinolophus blasii,1,betacoronavirus,Sarbecovirus,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,"Elenas Cave, Bratanova Cave (April), Big Vupa, Kaleto Cave, Roman Horse Cave (April), Maharata Cave Area (April)",NA,NA,NA,2008,"April,September",NA,NA,NA,NA,0,1,0,1,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,82,10,0.121951,Rhinolophidae,Rhinolophus,Rhinolophus blasii,1,alphacoronavirus,NA,"HKU2 related (3), BB98-15 (7)",pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,"Elenas Cave, Bratanova Cave (April), Big Vupa, Kaleto Cave, Roman Horse Cave (April), Maharata Cave Area (April)",NA,NA,NA,2008,"April,September",NA,NA,NA,NA,0,1,0,1,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,45,6,0.133333,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,betacoronavirus,Sarbecovirus,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,"Elenas Cave, Bratanova Cave (April), Big Vupa (April), Kaleto Cave (April), Roman Horse Cave, Malko Tarnovo Water Tunnel",NA,NA,NA,2008,"April,September",NA,NA,NA,NA,0,1,0,1,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,45,8,0.177778,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,alphacoronavirus,NA,BB98-15,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,"Elenas Cave, Bratanova Cave (April), Big Vupa (April), Kaleto Cave (April), Roman Horse Cave, Malko Tarnovo Water Tunnel",NA,NA,NA,2008,"April,September",NA,NA,NA,NA,0,1,0,1,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,13,4,0.307692,Rhinolophidae,Rhinolophus,Rhinolophus mehelyi,1,betacoronavirus,Sarbecovirus,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,"Elenas Cave (April), Kaleto Cave",NA,NA,NA,2008,"April,September",NA,NA,NA,NA,0,1,0,1,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,13,3,0.230769,Rhinolophidae,Rhinolophus,Rhinolophus mehelyi,1,alphacoronavirus,NA,BB98-15,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,"Elenas Cave (April), Kaleto Cave",NA,NA,NA,2008,"April,September",NA,NA,NA,NA,0,1,0,1,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,3,1,0.333333,Vespertilionidae,Nyctalus,Nyctalus leisleri,1,alphacoronavirus,NA,BNM98-30,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,Maharata Cave Area,42.06666667,27.76666667,NA,2008,April,NA,NA,NA,NA,0,0,0,1,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,6,0,0,Rhinolophidae,Rhinolophus,Rhinolophus hipposideros,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,"Big Vupa (April), Roman Horse Cave (September)",NA,NA,NA,2008,"April,September",NA,NA,NA,NA,0,1,0,1,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,32,0,0,Vespertilionidae,Myotis,Myotis bechsteinii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,"Elenas Cave, Bratanova Cave (April), Big Vupa (April), Kaleto Cave, Roman Horse Cave (September), Maharata Cave Area (April)",NA,NA,NA,2008,"April,September",NA,NA,NA,NA,0,1,0,1,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,12,0,0,Vespertilionidae,Barbastella,Barbastella barbastellus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,"Bratanova Cave, Big Vupa, Malko Tarnovo Water Tunnel",NA,NA,NA,2008,April,NA,NA,NA,NA,0,0,0,1,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,7,0,0,Vespertilionidae,Myotis,Myotis daubentonii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,"Bratanova Cave, Big Vupa, Kaleto Cave, Maharata Cave Area, Malko Tarnovo Water Tunnel",NA,NA,NA,2008,April,NA,NA,NA,NA,0,0,0,1,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,5,0,0,Vespertilionidae,Myotis,Myotis emarginatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,"Big Vupa, Bratanova Cave",NA,NA,NA,2008,April,NA,NA,NA,NA,0,0,0,1,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,3,0,0,Vespertilionidae,Myotis,Myotis myotis,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,Bratanova Cave,42.00583333,27.42258333,NA,2008,April,NA,NA,NA,NA,0,0,0,1,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,2,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pygmaeus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,Big Vupa,42.15888889,27.5125,NA,2008,April,NA,NA,NA,NA,0,0,0,1,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,2,0,0,Vespertilionidae,Myotis,Myotis alcathoe,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,"Bratanova Cave (April), Kaleto Cave (September)",NA,NA,NA,2008,"April,September",NA,NA,NA,NA,0,1,0,1,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,2,0,0,Vespertilionidae,Plecotus,Plecotus auritus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,Bratanova Cave,42.00583333,27.42258333,NA,2008,April,NA,NA,NA,NA,0,0,0,1,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,1,0,0,Vespertilionidae,Myotis,Myotis nattereri,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,Roman Horse Cave,42.09186111,27.20869444,NA,2008,September,NA,NA,NA,NA,0,1,0,0,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,1,0,0,Vespertilionidae,Myotis,Myotis mystacinus,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,Kaleto Cave,42.15194444,27.35777778,NA,2008,April,NA,NA,NA,NA,0,0,0,1,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,1,0,0,Vespertilionidae,Myotis,Myotis blythii,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,Roman Horse Cave,42.09186111,27.20869444,NA,2008,April,NA,NA,NA,NA,0,0,0,1,No
genomic characterization of severe acute respiratory syndrome-related coronavirus in european bats and classification of coronaviruses based on partial rna-dependent rna polymerase gene sequences,Drexler et al.,J Virol,2010,1,0,0,Vespertilionidae,Myotis,Myotis capaccinii,1,genus not specified,NA,NA,single,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Bulgaria,NA,Roman Horse Cave,42.09186111,27.20869444,NA,2008,September,NA,NA,NA,NA,0,1,0,0,No
"group b betacoronavirus in rhinolophid bats, japan",Suzuki et al.,J Vet Med Sci,2014,27,6,0.222222,Rhinolophidae,Rhinolophus,Rhinolophus cornutus,1; not in Upham phylogeny,betacoronavirus,Sarbecovirus,Rp3,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Japan,Iwate,Ogayu and Isari caves,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
"group b betacoronavirus in rhinolophid bats, japan",Suzuki et al.,J Vet Med Sci,2014,6,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Japan,Iwate,Ogayu and Isari caves,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
"group b betacoronavirus in rhinolophid bats, japan",Suzuki et al.,J Vet Med Sci,2014,4,0,0,Vespertilionidae,Myotis,Myotis macrodactylus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Japan,Iwate,Ogayu and Isari caves,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
"group b betacoronavirus in rhinolophid bats, japan",Suzuki et al.,J Vet Med Sci,2014,1,0,0,Vespertilionidae,Murina,Murina ussuriensis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,Japan,Iwate,Ogayu and Isari caves,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,6,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Gyeongbuk,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,19,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Jeonbuk,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,102,0,0,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Chungbuk,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,7,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Gyeongnam,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,79,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Gyeongbuk,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,3,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Gwangju,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,20,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Ulsan,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,24,13,0.541666667,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,oropharyngeal,swab,South Korea,Jeonbuk,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,20,0,0,Rhinolophidae,Rhinolophus,Rhinolophus ferrumequinum,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Chungbuk,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,24,0,0,Vespertilionidae,Eptesicus,Eptesicus serotinus,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Gangwon,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,48,0,0,Vespertilionidae,Eptesicus,Eptesicus serotinus,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Gyeongbuk,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,17,1,0.058823529,Vespertilionidae,Eptesicus,Eptesicus serotinus,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,South Korea,Gwangju,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,62,0,0,Vespertilionidae,Eptesicus,Eptesicus serotinus,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Ulsan,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,12,0,0,Vespertilionidae,Eptesicus,Eptesicus serotinus,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Jeonnam,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,18,0,0,Vespertilionidae,Murina,Murina leucogaster,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Gyeongbuk,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,15,0,0,Vespertilionidae,Murina,Murina leucogaster,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Chungbuk,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,3,0,0,Vespertilionidae,Murina,Murina ussuriensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Chungbuk,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,2,0,0,Vespertilionidae,Myotis,Myotis aurascens,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Gyeongbuk,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,1,0,0,Vespertilionidae,Myotis,Myotis aurascens,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Gwangju,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,7,0,0,Vespertilionidae,Myotis,Myotis aurascens,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Ulsan,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,1,0,0,Vespertilionidae,Myotis,Myotis aurascens,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Jeonnam,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,5,0,0,Vespertilionidae,Myotis,Myotis formosus,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Jeonnam,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,3,0,0,Vespertilionidae,Myotis,Myotis formosus,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Chungnam,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,14,0,0,Vespertilionidae,Myotis,Myotis ikonnikovi,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Chungbuk,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,4,0,0,Vespertilionidae,Myotis,Myotis macrodactylus,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Gyeongbuk,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,9,0,0,Vespertilionidae,Myotis,Myotis macrodactylus,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Jeonnam,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,17,0,0,Vespertilionidae,Myotis,Myotis macrodactylus,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Jeonbuk,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,4,0,0,Vespertilionidae,Myotis,Myotis macrodactylus,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Chungbuk,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,29,0,0,Vespertilionidae,Myotis,Myotis nattereri,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Gyeongbuk,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,8,0,0,Vespertilionidae,Myotis,Myotis petax,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Gyeongbuk,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,4,0,0,Vespertilionidae,Myotis,Myotis petax,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Ulsan,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,15,0,0,Vespertilionidae,Myotis,Myotis petax,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Chungbuk,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,1,0,0,Vespertilionidae,Pipistrellus,Pipistrellus alaschanicus,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Gyeongbuk,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,2,0,0,Vespertilionidae,Pipistrellus,Pipistrellus alaschanicus,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Gwangju,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,5,0,0,Vespertilionidae,Pipistrellus,Pipistrellus abramus,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Gangwon,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,27,3,0.111111111,Vespertilionidae,Pipistrellus,Pipistrellus abramus,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,South Korea,Gyeongbuk,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,5,0,0,Vespertilionidae,Pipistrellus,Pipistrellus abramus,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Daegu,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,2,0,0,Vespertilionidae,Pipistrellus,Pipistrellus abramus,1,genus not specified,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,pooled swabs/samples,pooled,South Korea,Ulsan,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
genetic characteristics of coronaviruses from korean bats in 2016,Lee et al.,Microb Ecol,2017,9,1,0.111111111,Vespertilionidae,Vespertilio,Vespertilio sinensis,1,betacoronavirus,NA,NA,single,cross-sectional,PCR,PCR,single,RdRp,RdRp,intestine,tissue,South Korea,Chungbuk,NA,NA,NA,NA,NA,NA,2016,January,2016,September,1,1,1,1,No
"human betacoronavirus 2c emc/2012-related viruses in bats, ghana and europe",Annan et al.,Emerg Infect Dis,2013,108,0,0,Emballonuridae,Coleura,Coleura afra,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,NA,"Bouyem, Forikrom, Shai Hills",NA,NA,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
"human betacoronavirus 2c emc/2012-related viruses in bats, ghana and europe",Annan et al.,Emerg Infect Dis,2013,604,0,0,Hipposideridae,Hipposideros,Hipposideros abae,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,NA,"Bouyem, Forikrom, Kwamang, Akpafu Todzi",NA,NA,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
"human betacoronavirus 2c emc/2012-related viruses in bats, ghana and europe",Annan et al.,Emerg Infect Dis,2013,28,0,0,Hipposideridae,Hipposideros,Hipposideros gigas,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,NA,"Bouyem, Forikrom, Kwamang",NA,NA,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
"human betacoronavirus 2c emc/2012-related viruses in bats, ghana and europe",Annan et al.,Emerg Infect Dis,2013,1,0,0,Hipposideridae,Hipposideros,Hipposideros fuliginosus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,NA,Bobiri,6.6871,-1.34415,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
"human betacoronavirus 2c emc/2012-related viruses in bats, ghana and europe",Annan et al.,Emerg Infect Dis,2013,31,0,0,Hipposideridae,Hipposideros,Hipposideros jonesi,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,NA,"Bobiri, Kwamang",NA,NA,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
"human betacoronavirus 2c emc/2012-related viruses in bats, ghana and europe",Annan et al.,Emerg Infect Dis,2013,3763,0,0,Hipposideridae,Hipposideros,Hipposideros ruber,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,NA,"Bouyem, Forikrom, Bobiri, Kwamang, Akpafu Todzi, Likpe Todome",NA,NA,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
"human betacoronavirus 2c emc/2012-related viruses in bats, ghana and europe",Annan et al.,Emerg Infect Dis,2013,5,2,0.4,Nycteridae,Nycteris,Nycteris gambiensis,1,betacoronavirus,Merbecovirus,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,NA,Bouyem,7.723583056,-1.987916944,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
"human betacoronavirus 2c emc/2012-related viruses in bats, ghana and europe",Annan et al.,Emerg Infect Dis,2013,65,15,0.230769,Nycteridae,Nycteris,Nycteris gambiensis,1,betacoronavirus,Merbecovirus,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,NA,Forikrom,7.58975,-1.875083056,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
"human betacoronavirus 2c emc/2012-related viruses in bats, ghana and europe",Annan et al.,Emerg Infect Dis,2013,104,29,0.278846,Nycteridae,Nycteris,Nycteris gambiensis,1,betacoronavirus,Merbecovirus,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,NA,Kwamang,6.966666944,-1.266666944,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
"human betacoronavirus 2c emc/2012-related viruses in bats, ghana and europe",Annan et al.,Emerg Infect Dis,2013,1,0,0,Nycteridae,Nycteris,Nycteris gambiensis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,NA,Akpafu Todzi,7.261971944,0,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
"human betacoronavirus 2c emc/2012-related viruses in bats, ghana and europe",Annan et al.,Emerg Infect Dis,2013,4,0,0,Rhinolophidae,Rhinolophus,Rhinolophus alcyone,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,NA,Bobiri,6.6871,-1.34415,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
"human betacoronavirus 2c emc/2012-related viruses in bats, ghana and europe",Annan et al.,Emerg Infect Dis,2013,13,0,0,Rhinolophidae,Rhinolophus,Rhinolophus landeri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,NA,"Forikrom, Kwamang, Akpafu Todzi",NA,NA,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
"human betacoronavirus 2c emc/2012-related viruses in bats, ghana and europe",Annan et al.,Emerg Infect Dis,2013,21,0,0,Emballonuridae,Taphozous,Taphozous perforatus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ghana,NA,Shai Hills,5.929,0,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
"human betacoronavirus 2c emc/2012-related viruses in bats, ghana and europe",Annan et al.,Emerg Infect Dis,2013,7,0,0,Vespertilionidae,Pipistrellus,Pipistrellus kuhlii,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ukraine,NA,Kiev region,50.45009,30.5234,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
"human betacoronavirus 2c emc/2012-related viruses in bats, ghana and europe",Annan et al.,Emerg Infect Dis,2013,2,0,0,Vespertilionidae,Pipistrellus,Pipistrellus nathusii,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Germany,Schleswig-Holstein,Holstein area,54.24757528,10.06759639,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
"human betacoronavirus 2c emc/2012-related viruses in bats, ghana and europe",Annan et al.,Emerg Infect Dis,2013,74,29,0.391892,Vespertilionidae,Pipistrellus,Pipistrellus nathusii,1,betacoronavirus,Merbecovirus,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Romania,NA,Tulcea county,45.2,29,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
"human betacoronavirus 2c emc/2012-related viruses in bats, ghana and europe",Annan et al.,Emerg Infect Dis,2013,6,1,0.166667,Vespertilionidae,Pipistrellus,Pipistrellus nathusii,1,betacoronavirus,Merbecovirus,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ukraine,NA,Kiev region,50.45009,30.5234,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
"human betacoronavirus 2c emc/2012-related viruses in bats, ghana and europe",Annan et al.,Emerg Infect Dis,2013,29,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Germany,Rhineland-Palatinate,Eifel area,50.33481,7.24192,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
"human betacoronavirus 2c emc/2012-related viruses in bats, ghana and europe",Annan et al.,Emerg Infect Dis,2013,7,1,0.142857,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,betacoronavirus,Merbecovirus,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Romania,NA,Tulcea county,45.2,29,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
"human betacoronavirus 2c emc/2012-related viruses in bats, ghana and europe",Annan et al.,Emerg Infect Dis,2013,6,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pipistrellus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Netherlands,NA,Province Gelderland,52.02968306,6.21803,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
"human betacoronavirus 2c emc/2012-related viruses in bats, ghana and europe",Annan et al.,Emerg Infect Dis,2013,44,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pygmaeus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Germany,Schleswig-Holstein,Holstein area,54.24757528,10.06759639,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
"human betacoronavirus 2c emc/2012-related viruses in bats, ghana and europe",Annan et al.,Emerg Infect Dis,2013,91,9,0.098901,Vespertilionidae,Pipistrellus,Pipistrellus pygmaeus,1,betacoronavirus,Merbecovirus,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Romania,NA,Tulcea county,45.2,29,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
"human betacoronavirus 2c emc/2012-related viruses in bats, ghana and europe",Annan et al.,Emerg Infect Dis,2013,6,0,0,Vespertilionidae,Pipistrellus,Pipistrellus pygmaeus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Ukraine,NA,Kiev region,50.45009,30.5234,NA,NA,NA,2009,NA,2011,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,217,12,0.0553,Pteropodidae,Pteropus,NA,NA,betacoronavirus,Nobecovirus,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,India,Kerala,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,21,0,0,Pteropodidae,Pteropus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,India,Kerala,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,42,4,0.095238,Pteropodidae,Rousettus,NA,NA,betacoronavirus,Nobecovirus,"GX2018, HKU9",pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,India,Kerala,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,4,0,0,Pteropodidae,Rousettus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,India,Kerala,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,78,0,0,Pteropodidae,Pteropus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,India,Karnataka,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,4,0,0,Pteropodidae,Rousettus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,India,Karnataka,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,4,0,0,Pteropodidae,Rousettus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,India,Karnataka,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,27,0,0,Pteropodidae,Pteropus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,India,Chandigarh,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,6,0,0,Pteropodidae,Rousettus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,India,Chandigarh,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,6,0,0,Pteropodidae,Rousettus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,India,Chandigarh,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,30,0,0,Pteropodidae,Pteropus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,India,Gujarat,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,18,0,0,Pteropodidae,Rousettus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,India,Gujarat,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,18,0,0,Pteropodidae,Rousettus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,India,Gujarat,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,30,0,0,Pteropodidae,Pteropus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,India,Odisha,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,2,0,0,Pteropodidae,Rousettus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,India,Odisha,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,2,0,0,Pteropodidae,Rousettus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,India,Odisha,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,14,0,0,Pteropodidae,Pteropus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,India,Punjab,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,2,0,0,Pteropodidae,Rousettus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,India,Punjab,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,2,0,0,Pteropodidae,Rousettus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,India,Punjab,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,30,0,0,Pteropodidae,Pteropus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,India,Telangana,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,4,0,0,Pteropodidae,Rousettus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,India,Telangana,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,4,0,0,Pteropodidae,Rousettus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,India,Telangana,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,29,2,0.068966,Pteropodidae,Pteropus,NA,NA,betacoronavirus,Nobecovirus,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,India,Himachal Pradesh,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,6,0,0,Pteropodidae,Pteropus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,India,Himachal Pradesh,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,23,6,0.26087,Pteropodidae,Pteropus,NA,NA,betacoronavirus,Nobecovirus,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,India,Puducherry,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,10,0,0,Pteropodidae,Pteropus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,India,Puducherry,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,30,1,0.033333,Pteropodidae,Pteropus,NA,NA,betacoronavirus,Nobecovirus,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",swab,India,Tamil Nadu,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of coronaviruses in pteropus & rousettus species of bats from different states of india,Yadav et al.,Indian J Med Res,2020,5,0,0,Pteropodidae,Pteropus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,oropharyngeal,swab,India,Tamil Nadu,NA,NA,NA,NA,NA,NA,2018,NA,2019,NA,1,1,1,1,No
detection of diverse viruses in alimentary specimens of bats in macau,Liang et al.,Virol Sin,2017,1,0,0,Pteropodidae,Cynopterus,Cynopterus sphinx,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Macau,NA,NA,NA,1,2016,March,NA,NA,NA,NA,0,0,0,1,No
detection of diverse viruses in alimentary specimens of bats in macau,Liang et al.,Virol Sin,2017,1,0,0,Pteropodidae,Eonycteris,Eonycteris spelaea,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Macau,NA,NA,NA,1,2015,May,NA,NA,NA,NA,1,0,0,0,No
detection of diverse viruses in alimentary specimens of bats in macau,Liang et al.,Virol Sin,2017,356,2,0.005618,Rhinolophidae,Rhinolophus,Rhinolophus pusillus,1,alphacoronavirus,NA,1A/1B,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Macau,NA,NA,NA,6,NA,NA,2015,December,2016,February,0,0,1,0,No
detection of diverse viruses in alimentary specimens of bats in macau,Liang et al.,Virol Sin,2017,2,0,0,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,urinary,tissue,China,Macau,NA,NA,NA,1,2015,November,NA,NA,NA,NA,0,1,0,0,No
detection of diverse viruses in alimentary specimens of bats in macau,Liang et al.,Virol Sin,2017,421,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Macau,NA,NA,NA,8,NA,NA,2015,December,2016,March,0,0,1,1,No
detection of diverse viruses in alimentary specimens of bats in macau,Liang et al.,Virol Sin,2017,8,0,0,Vespertilionidae,Pipistrellus,Pipistrellus abramus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Macau,NA,NA,NA,2,2015,September,NA,NA,NA,NA,0,1,0,0,No
detection of diverse viruses in alimentary specimens of bats in macau,Liang et al.,Virol Sin,2017,4,0,0,Vespertilionidae,Pipistrellus,Pipistrellus abramus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Macau,NA,NA,NA,2,2015,September,NA,NA,NA,NA,0,1,0,0,No
detection of diverse viruses in alimentary specimens of bats in macau,Liang et al.,Virol Sin,2017,13,0,0,Vespertilionidae,Pipistrellus,Pipistrellus tenuis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Macau,NA,NA,NA,1,2015,September,NA,NA,NA,NA,0,1,0,0,No
detection of diverse viruses in alimentary specimens of bats in macau,Liang et al.,Virol Sin,2017,78,24,0.307692,Miniopteridae,Miniopterus,Miniopterus schreibersii,1,alphacoronavirus,NA,"HKU7, 1A/1B",pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Macau,NA,NA,NA,2,NA,NA,2015,July,2016,March,1,0,0,1,No
detection of diverse viruses in alimentary specimens of bats in macau,Liang et al.,Virol Sin,2017,42,10,0.238095,Vespertilionidae,Myotis,Myotis pilosus,1,alphacoronavirus,NA,HKU6,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Macau,NA,NA,NA,2,NA,NA,2015,July,2016,March,1,0,0,1,No
detection of diverse viruses in alimentary specimens of bats in macau,Liang et al.,Virol Sin,2017,78,14,0.179487,Vespertilionidae,Tylonycteris,Tylonycteris pachypus,1,betacoronavirus,NA,HKU4,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,China,Macau,NA,NA,NA,3,NA,NA,2015,July,2016,May,1,0,0,1,No
detection of group 1 coronaviruses in bats in north america,Dominguez et al.,Emerg Infect Dis,2007,1,0,0,Molossidae,Tadarida,Tadarida brasiliensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,United States of America,Colorado,Mancos,NA,NA,1,2006,August,NA,NA,NA,NA,1,0,0,0,No
detection of group 1 coronaviruses in bats in north america,Dominguez et al.,Emerg Infect Dis,2007,3,0,0,Vespertilionidae,Myotis,Myotis occultus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,United States of America,Colorado,Mancos,NA,NA,1,2006,August,NA,NA,NA,NA,1,0,0,0,No
detection of group 1 coronaviruses in bats in north america,Dominguez et al.,Emerg Infect Dis,2007,6,0,0,Vespertilionidae,Myotis,Myotis occultus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,United States of America,Colorado,Mancos,NA,NA,1,2006,August,NA,NA,NA,NA,1,0,0,0,No
detection of group 1 coronaviruses in bats in north america,Dominguez et al.,Emerg Infect Dis,2007,2,1,0.5,Vespertilionidae,Myotis,Myotis occultus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,United States of America,Colorado,Mancos,NA,NA,1,2006,August,NA,NA,NA,NA,1,0,0,0,No
detection of group 1 coronaviruses in bats in north america,Dominguez et al.,Emerg Infect Dis,2007,21,0,0,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,United States of America,Colorado,Fort Collins,NA,NA,1,2006,August,NA,NA,NA,NA,1,0,0,0,No
detection of group 1 coronaviruses in bats in north america,Dominguez et al.,Emerg Infect Dis,2007,3,1,0.333333,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,United States of America,Colorado,Fort Collins,NA,NA,1,2006,August,NA,NA,NA,NA,1,0,0,0,No
detection of group 1 coronaviruses in bats in north america,Dominguez et al.,Emerg Infect Dis,2007,1,0,0,Vespertilionidae,Myotis,Myotis ciliolabrum,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,United States of America,Colorado,Soapstone Prairie,NA,NA,1,2006,August,NA,NA,NA,NA,1,0,0,0,No
detection of group 1 coronaviruses in bats in north america,Dominguez et al.,Emerg Infect Dis,2007,1,0,0,Vespertilionidae,Myotis,Myotis evotis,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,United States of America,Colorado,Soapstone Prairie,NA,NA,1,2006,August,NA,NA,NA,NA,1,0,0,0,No
detection of group 1 coronaviruses in bats in north america,Dominguez et al.,Emerg Infect Dis,2007,1,0,0,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,United States of America,Colorado,Montezuma county sewage tx lagoon,NA,NA,1,2006,August,NA,NA,NA,NA,1,0,0,0,No
detection of group 1 coronaviruses in bats in north america,Dominguez et al.,Emerg Infect Dis,2007,2,0,0,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,United States of America,Colorado,Montezuma county sewage tx lagoon,NA,NA,1,2006,August,NA,NA,NA,NA,1,0,0,0,No
detection of group 1 coronaviruses in bats in north america,Dominguez et al.,Emerg Infect Dis,2007,3,0,0,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,United States of America,Colorado,Montezuma county sewage tx lagoon,NA,NA,1,2006,August,NA,NA,NA,NA,1,0,0,0,No
detection of group 1 coronaviruses in bats in north america,Dominguez et al.,Emerg Infect Dis,2007,2,0,0,Vespertilionidae,Myotis,Myotis evotis,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,United States of America,Colorado,Montezuma county sewage tx lagoon,NA,NA,1,2006,August,NA,NA,NA,NA,1,0,0,0,No
detection of group 1 coronaviruses in bats in north america,Dominguez et al.,Emerg Infect Dis,2007,1,0,0,Vespertilionidae,Myotis,Myotis evotis,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,United States of America,Colorado,Montezuma county sewage tx lagoon,NA,NA,1,2006,August,NA,NA,NA,NA,1,0,0,0,No
detection of group 1 coronaviruses in bats in north america,Dominguez et al.,Emerg Infect Dis,2007,1,0,0,Vespertilionidae,Myotis,Myotis evotis,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,United States of America,Colorado,Montezuma county sewage tx lagoon,NA,NA,1,2006,August,NA,NA,NA,NA,1,0,0,0,No
detection of group 1 coronaviruses in bats in north america,Dominguez et al.,Emerg Infect Dis,2007,2,0,0,Vespertilionidae,Lasionycteris,Lasionycteris noctivagans,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,United States of America,Colorado,Montezuma county sewage tx lagoon,NA,NA,1,2006,August,NA,NA,NA,NA,1,0,0,0,No
detection of group 1 coronaviruses in bats in north america,Dominguez et al.,Emerg Infect Dis,2007,2,0,0,Vespertilionidae,Myotis,Myotis volans,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,United States of America,Colorado,Montezuma county sewage tx lagoon,NA,NA,1,2006,August,NA,NA,NA,NA,1,0,0,0,No
detection of group 1 coronaviruses in bats in north america,Dominguez et al.,Emerg Infect Dis,2007,4,0,0,Vespertilionidae,Myotis,Myotis volans,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,United States of America,Colorado,Montezuma county sewage tx lagoon,NA,NA,1,2006,August,NA,NA,NA,NA,1,0,0,0,No
detection of group 1 coronaviruses in bats in north america,Dominguez et al.,Emerg Infect Dis,2007,6,0,0,Vespertilionidae,Myotis,Myotis volans,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,United States of America,Colorado,Montezuma county sewage tx lagoon,NA,NA,1,2006,August,NA,NA,NA,NA,1,0,0,0,No
detection of group 1 coronaviruses in bats in north america,Dominguez et al.,Emerg Infect Dis,2007,1,0,0,Molossidae,Tadarida,Tadarida brasiliensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,pooled,United States of America,Colorado,Montezuma county sewage tx lagoon,NA,NA,1,2006,August,NA,NA,NA,NA,1,0,0,0,No
detection of group 1 coronaviruses in bats in north america,Dominguez et al.,Emerg Infect Dis,2007,8,4,0.5,Vespertilionidae,Myotis,Myotis occultus,1,alphacoronavirus,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,United States of America,Colorado,Montezuma county sewage tx lagoon,NA,NA,1,2006,August,NA,NA,NA,NA,1,0,0,0,No
detection of group 1 coronaviruses in bats in north america,Dominguez et al.,Emerg Infect Dis,2007,5,0,0,Vespertilionidae,Myotis,Myotis occultus,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,United States of America,Colorado,Montezuma county sewage tx lagoon,NA,NA,1,2006,August,NA,NA,NA,NA,1,0,0,0,No
detection of new genetic variants of betacoronaviruses in endemic frugivorous bats of madagascar,Razanajatovo et al.,Virol J,2015,85,0,0,Pteropodidae,Eidolon,Eidolon dupreanum,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Madagascar,Toliara,NA,NA,NA,NA,2007,February,NA,NA,NA,NA,1,0,0,0,No
detection of new genetic variants of betacoronaviruses in endemic frugivorous bats of madagascar,Razanajatovo et al.,Virol J,2015,55,0,0,Pteropodidae,Rousettus,Rousettus madagascariensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Madagascar,Anosibe An'ala,NA,NA,NA,NA,2010,February,NA,NA,NA,NA,1,0,0,0,No
detection of new genetic variants of betacoronaviruses in endemic frugivorous bats of madagascar,Razanajatovo et al.,Virol J,2015,19,0,0,Pteropodidae,Rousettus,Rousettus madagascariensis,1,genus not specified,NA,NA,single,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Madagascar,Anosibe An'ala,NA,NA,NA,NA,2010,February,NA,NA,NA,NA,1,0,0,0,No
detection of new genetic variants of betacoronaviruses in endemic frugivorous bats of madagascar,Razanajatovo et al.,Virol J,2015,3,0,0,Pteropodidae,Pteropus,Pteropus rufus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Madagascar,Menabe,Manamby,NA,NA,NA,NA,NA,2010,June,2011,July,0,0,1,0,No
detection of new genetic variants of betacoronaviruses in endemic frugivorous bats of madagascar,Razanajatovo et al.,Virol J,2015,3,0,0,Pteropodidae,Pteropus,Pteropus rufus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Madagascar,Menabe,Manamby,NA,NA,NA,NA,NA,2010,June,2011,July,0,0,1,0,No
detection of new genetic variants of betacoronaviruses in endemic frugivorous bats of madagascar,Razanajatovo et al.,Virol J,2015,3,0,0,Pteropodidae,Pteropus,Pteropus rufus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Madagascar,Menabe,Befasy,NA,NA,NA,NA,NA,2010,June,2011,July,0,0,1,0,No
detection of new genetic variants of betacoronaviruses in endemic frugivorous bats of madagascar,Razanajatovo et al.,Virol J,2015,3,0,0,Pteropodidae,Pteropus,Pteropus rufus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Madagascar,Menabe,Befasy,NA,NA,NA,NA,NA,2010,June,2011,July,0,0,1,0,No
detection of new genetic variants of betacoronaviruses in endemic frugivorous bats of madagascar,Razanajatovo et al.,Virol J,2015,48,0,0,Pteropodidae,Pteropus,Pteropus rufus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Madagascar,Menabe,Ankiliabo,NA,NA,NA,NA,NA,2010,June,2011,July,0,0,1,0,No
detection of new genetic variants of betacoronaviruses in endemic frugivorous bats of madagascar,Razanajatovo et al.,Virol J,2015,48,5,0.104167,Pteropodidae,Pteropus,Pteropus rufus,1,betacoronavirus,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Madagascar,Menabe,Ankiliabo,NA,NA,NA,NA,NA,2010,June,2011,July,0,0,1,0,No
detection of new genetic variants of betacoronaviruses in endemic frugivorous bats of madagascar,Razanajatovo et al.,Virol J,2015,1,0,0,Pteropodidae,Eidolon,Eidolon dupreanum,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Madagascar,Menabe,Ankiliabo,NA,NA,NA,NA,NA,2010,June,2011,July,0,0,1,0,No
detection of new genetic variants of betacoronaviruses in endemic frugivorous bats of madagascar,Razanajatovo et al.,Virol J,2015,1,0,0,Pteropodidae,Eidolon,Eidolon dupreanum,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Madagascar,Menabe,Ankiliabo,NA,NA,NA,NA,NA,2010,June,2011,July,0,0,1,0,No
detection of new genetic variants of betacoronaviruses in endemic frugivorous bats of madagascar,Razanajatovo et al.,Virol J,2015,9,0,0,Pteropodidae,Pteropus,Pteropus rufus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Madagascar,Menabe,Mahabo,NA,NA,NA,NA,NA,2010,June,2011,July,0,0,1,0,No
detection of new genetic variants of betacoronaviruses in endemic frugivorous bats of madagascar,Razanajatovo et al.,Virol J,2015,9,2,0.222222,Pteropodidae,Pteropus,Pteropus rufus,1,betacoronavirus,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Madagascar,Menabe,Mahabo,NA,NA,NA,NA,NA,2010,June,2011,July,0,0,1,0,No
detection of new genetic variants of betacoronaviruses in endemic frugivorous bats of madagascar,Razanajatovo et al.,Virol J,2015,8,0,0,Pteropodidae,Eidolon,Eidolon dupreanum,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Madagascar,Menabe,Mahabo,NA,NA,NA,NA,NA,2010,June,2011,July,0,0,1,0,No
detection of new genetic variants of betacoronaviruses in endemic frugivorous bats of madagascar,Razanajatovo et al.,Virol J,2015,8,1,0.125,Pteropodidae,Eidolon,Eidolon dupreanum,1,betacoronavirus,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Madagascar,Menabe,Mahabo,NA,NA,NA,NA,NA,2010,June,2011,July,0,0,1,0,No
detection of new genetic variants of betacoronaviruses in endemic frugivorous bats of madagascar,Razanajatovo et al.,Virol J,2015,13,0,0,Pteropodidae,Pteropus,Pteropus rufus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Madagascar,Menabe,Bemanonga,NA,NA,NA,NA,NA,2010,June,2011,July,0,0,1,0,No
detection of new genetic variants of betacoronaviruses in endemic frugivorous bats of madagascar,Razanajatovo et al.,Virol J,2015,13,6,0.461538,Pteropodidae,Pteropus,Pteropus rufus,1,betacoronavirus,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Madagascar,Menabe,Bemanonga,NA,NA,NA,NA,NA,2010,June,2011,July,0,0,1,0,No
detection of new genetic variants of betacoronaviruses in endemic frugivorous bats of madagascar,Razanajatovo et al.,Virol J,2015,2,0,0,Pteropodidae,Eidolon,Eidolon dupreanum,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Madagascar,Menabe,Bemanonga,NA,NA,NA,NA,NA,2010,June,2011,July,0,0,1,0,No
detection of new genetic variants of betacoronaviruses in endemic frugivorous bats of madagascar,Razanajatovo et al.,Virol J,2015,2,0,0,Pteropodidae,Eidolon,Eidolon dupreanum,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Madagascar,Menabe,Bemanonga,NA,NA,NA,NA,NA,2010,June,2011,July,0,0,1,0,No
detection of new genetic variants of betacoronaviruses in endemic frugivorous bats of madagascar,Razanajatovo et al.,Virol J,2015,123,0,0,Pteropodidae,Rousettus,Rousettus madagascariensis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Madagascar,Anjohibe,NA,NA,NA,NA,NA,NA,2010,November,2011,November,0,0,0,1,No
detection of new genetic variants of betacoronaviruses in endemic frugivorous bats of madagascar,Razanajatovo et al.,Virol J,2015,122,0,0,Pteropodidae,Rousettus,Rousettus madagascariensis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Madagascar,Anjohibe,NA,NA,NA,NA,NA,NA,2010,November,2011,November,0,0,0,1,No
detection of novel coronaviruses in bats in myanmar,Valitutto et al.,Plos One,2020,12,3,0.25,Vespertilionidae,Scotophilus,Scotophilus heathii,1,coinfection,NA,PREDICT_CoV-35 (alpha) w/ PREDICT_CoV-90 (alpha) co-infection,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Myanmar,NA,NA,NA,NA,NA,NA,NA,2016,May,2018,August,1,1,1,1,No
detection of novel coronaviruses in bats in myanmar,Valitutto et al.,Plos One,2020,12,0,0,Vespertilionidae,Scotophilus,Scotophilus heathii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Myanmar,NA,NA,NA,NA,NA,NA,NA,2016,May,2018,August,1,1,1,1,No
detection of novel coronaviruses in bats in myanmar,Valitutto et al.,Plos One,2020,1,0,0,Vespertilionidae,Scotophilus,Scotophilus kuhlii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Myanmar,NA,NA,NA,NA,NA,NA,NA,2016,May,2018,August,1,1,1,1,No
detection of novel coronaviruses in bats in myanmar,Valitutto et al.,Plos One,2020,3,1,0.333333,Emballonuridae,Taphozous,NA,NA,alphacoronavirus,NA,PREDICT_CoV-35,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Myanmar,NA,NA,NA,NA,NA,NA,NA,2016,May,2018,August,1,1,1,1,No
detection of novel coronaviruses in bats in myanmar,Valitutto et al.,Plos One,2020,3,0,0,Emballonuridae,Taphozous,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Myanmar,NA,NA,NA,NA,NA,NA,NA,2016,May,2018,August,1,1,1,1,No
detection of novel coronaviruses in bats in myanmar,Valitutto et al.,Plos One,2020,65,0,0,Molossidae,Chaerephon,Chaerephon plicatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Myanmar,NA,NA,NA,NA,NA,NA,NA,2016,May,2018,August,1,1,1,1,No
detection of novel coronaviruses in bats in myanmar,Valitutto et al.,Plos One,2020,219,0,0,Molossidae,Chaerephon,Chaerephon plicatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Myanmar,NA,NA,NA,NA,NA,NA,NA,2016,May,2018,August,1,1,1,1,No
detection of novel coronaviruses in bats in myanmar,Valitutto et al.,Plos One,2020,105,4,0.038095,Molossidae,Chaerephon,Chaerephon plicatus,1,alphacoronavirus,NA,"PREDICT_CoV-47 (alpha), 82 (alpha) - pooled, not co-infection",pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Myanmar,NA,NA,NA,NA,NA,NA,NA,2016,May,2018,August,1,1,1,1,No
detection of novel coronaviruses in bats in myanmar,Valitutto et al.,Plos One,2020,17,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Myanmar,NA,NA,NA,NA,NA,NA,NA,2016,May,2018,August,1,1,1,1,No
detection of novel coronaviruses in bats in myanmar,Valitutto et al.,Plos One,2020,16,3,0.1875,Hipposideridae,Hipposideros,Hipposideros larvatus,1,coinfection,NA,"PREDICT_CoV-92 (beta), 93 (beta), 96 (beta) (93 as co-infection w/ 96 and 96 as co-infection w/ 92)",pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Myanmar,NA,NA,NA,NA,NA,NA,NA,2016,May,2018,August,1,1,1,1,No
detection of novel coronaviruses in bats in myanmar,Valitutto et al.,Plos One,2020,18,1,0.055556,Hipposideridae,Hipposideros,Hipposideros larvatus,1,coinfection,NA,"PREDICT_CoV-92 (beta), 93 (beta), 96 (beta) (93 as co-infection w/ 96 and 96 as co-infection w/ 92)",pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Myanmar,NA,NA,NA,NA,NA,NA,NA,2016,May,2018,August,1,1,1,1,No
detection of novel coronaviruses in bats in myanmar,Valitutto et al.,Plos One,2020,50,36,0.72,Hipposideridae,Hipposideros,Hipposideros larvatus,1,coinfection,NA,"PREDICT_CoV-92 (beta), 93 (beta), 96 (beta) (93 as co-infection w/ 96 and 96 as co-infection w/ 92)",pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Myanmar,NA,NA,NA,NA,NA,NA,NA,2016,May,2018,August,1,1,1,1,No
detection of novel coronaviruses in bats in myanmar,Valitutto et al.,Plos One,2020,9,0,0,Craseonycteridae,Craseonycteris,Craseonycteris thonglongyai,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Myanmar,NA,NA,NA,NA,NA,NA,NA,2016,May,2018,August,1,1,1,1,No
detection of novel coronaviruses in bats in myanmar,Valitutto et al.,Plos One,2020,31,0,0,Craseonycteridae,Craseonycteris,Craseonycteris thonglongyai,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Myanmar,NA,NA,NA,NA,NA,NA,NA,2016,May,2018,August,1,1,1,1,No
detection of novel coronaviruses in bats in myanmar,Valitutto et al.,Plos One,2020,33,0,0,Pteropodidae,Eonycteris,Eonycteris spelaea,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Myanmar,NA,NA,NA,NA,NA,NA,NA,2016,May,2018,August,1,1,1,1,No
detection of novel coronaviruses in bats in myanmar,Valitutto et al.,Plos One,2020,38,0,0,Pteropodidae,Cynopterus,Cynopterus sphinx,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,oropharyngeal,swab,Myanmar,NA,NA,NA,NA,NA,NA,NA,2016,May,2018,August,1,1,1,1,No
detection of novel coronaviruses in bats in myanmar,Valitutto et al.,Plos One,2020,5,0,0,Pteropodidae,Cynopterus,Cynopterus sphinx,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Myanmar,NA,NA,NA,NA,NA,NA,NA,2016,May,2018,August,1,1,1,1,No
detection of novel coronaviruses in bats in myanmar,Valitutto et al.,Plos One,2020,29,0,0,Pteropodidae,Pteropus,Pteropus giganteus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested RT-PCR,multiple,RdRp,RdRp,pooled swabs/samples,swab,Myanmar,NA,NA,NA,NA,NA,NA,NA,2016,May,2018,August,1,1,1,1,No
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,10,0,0,Megadermatidae,Cardioderma,Cardioderma cor,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,15,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,3,1,0.333333,Megadermatidae,Cardioderma,Cardioderma cor,1,alphacoronavirus,NA,BtCoVA970-like,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,12,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,14,1,0.071429,Molossidae,Chaerephon,NA,NA,alphacoronavirus,NA,BtHKU7-like,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,6,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,19,6,0.315789,Molossidae,Chaerephon,NA,NA,genus not specified,Sarbecovirus,"BtHKU7-like, BtKY18-like, SARSCoV-like",pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,17,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,5,0,0,Molossidae,Chaerephon,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,3,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,3,2,0.666667,Molossidae,Chaerephon,Chaerephon pumilus,1,alphacoronavirus,NA,HCoV229E-like,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,3,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,4,0,0,Molossidae,Chaerephon,Chaerephon pumilus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,11,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,1,0,0,Emballonuridae,Coleura,Coleura afra,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,11,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,1,0,0,Emballonuridae,Coleura,Coleura afra,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,14,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,10,6,0.6,Pteropodidae,Eidolon,Eidolon helvum,1,betacoronavirus,NA,BtKY18-like,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,4,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,3,0,0,Pteropodidae,Epomophorus,Epomophorus wahlbergi,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,9,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,10,1,0.1,Hipposideridae,Hipposideros,Hipposideros commersoni,1,betacoronavirus,NA,BtHKU9-like,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,14,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,4,0,0,Hipposideridae,Hipposideros,Hipposideros ruber,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,2,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,2,0,0,Hipposideridae,Hipposideros,Hipposideros ruber,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,5,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,10,0,0,Pteropodidae,Myonycteris,Myonycteris angolensis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,5,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,8,1,0.125,Miniopteridae,Miniopterus,Miniopterus inflatus,1,alphacoronavirus,NA,BtCoV1A-like,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,10,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,12,7,0.583333,Miniopteridae,Miniopterus,Miniopterus inflatus,1,alphacoronavirus,NA,"BtCoV1A-like, BtHKU8-like",pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,5,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,16,1,0.0625,Miniopteridae,Miniopterus,Miniopterus minor,1,alphacoronavirus,NA,BtCoV1A-like,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,13,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,7,1,0.142857,Miniopteridae,Miniopterus,Miniopterus natalensis,1,alphacoronavirus,NA,BtCoV1A-like,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,1,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,4,0,0,Vespertilionidae,Neoromicia,Neoromicia tenuipinnis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,6,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,19,2,0.105263,Molossidae,Otomops,Otomops martiensseni,1,alphacoronavirus,NA,BtHKU7-like,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,7,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,1,0,0,Vespertilionidae,Pipistrellus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,8,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,4,0,0,Rhinolophidae,Rhinolophus,Rhinolophus hildebrandtii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,10,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,1,0,0,Rhinolophidae,Rhinolophus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,14,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,1,0,0,Rhinolophidae,Rhinolophus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,13,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,5,0,0,Rhinolophidae,Rhinolophus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,8,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,10,2,0.2,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,betacoronavirus,NA,BtKY18-like,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,1,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,9,2,0.222222,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,alphacoronavirus,NA,"BtCoVA970-like, BtHKU9-like",pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,2,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,9,6,0.666667,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,alphacoronavirus,NA,"BtCoVA970-like, BtHKU9-like",pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,16,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,11,2,0.181818,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,alphacoronavirus,NA,BtHKU9-like,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,13,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,3,0,0,Emballonuridae,Taphozous,Taphozous hildegardeae,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,14,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
detection of novel sars-like and other coronaviruses in bats from kenya,Tong et al.,Emerg Infect Dis,2009,2,0,0,Emballonuridae,Taphozous,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,semi-nested RT-PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",swab,Kenya,NA,11,NA,NA,NA,2006,NA,NA,July,NA,August,1,0,0,0,Yes
rapid detection of mers coronavirus-like viruses in bats: potential for tracking mers coronavirus transmission and animal origin,Woo et al.,Emerg Microbes Infect,2018,16,0,0,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,Merbecovirus,Ty-BatCoV-HKU4 and Pi-BatCoV-HKU5,pooled,cross-sectional,Lateral Flow Immunoassay,Lateral flow immunoassay,single,Other,N,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guizhou",NA,NA,NA,NA,NA,NA,2006,NA,2015,NA,1,1,1,1,Yes
rapid detection of mers coronavirus-like viruses in bats: potential for tracking mers coronavirus transmission and animal origin,Woo et al.,Emerg Microbes Infect,2018,23,0,0,Rhinolophidae,Rhinolophus,Rhinolophus sinicus,1,betacoronavirus,Merbecovirus,Ty-BatCoV-HKU4 and Pi-BatCoV-HKU5,pooled,cross-sectional,Lateral Flow Immunoassay,Lateral flow immunoassay,single,Other,N,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guizhou",NA,NA,NA,NA,NA,NA,2006,NA,2015,NA,1,1,1,1,Yes
rapid detection of mers coronavirus-like viruses in bats: potential for tracking mers coronavirus transmission and animal origin,Woo et al.,Emerg Microbes Infect,2018,27,24,0.888889,Vespertilionidae,Tylonycteris,Tylonycteris pachypus,1,betacoronavirus,Merbecovirus,Ty-BatCoV-HKU4,pooled,cross-sectional,Lateral Flow Immunoassay,Lateral flow immunoassay,single,Other,N,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guizhou",NA,NA,NA,NA,NA,NA,2006,NA,2015,NA,1,1,1,1,Yes
rapid detection of mers coronavirus-like viruses in bats: potential for tracking mers coronavirus transmission and animal origin,Woo et al.,Emerg Microbes Infect,2018,21,4,0.190476,Vespertilionidae,Pipistrellus,Pipistrellus abramus,1,betacoronavirus,Merbecovirus,Pi-BatCoV-HKU5,pooled,cross-sectional,Lateral Flow Immunoassay,Lateral flow immunoassay,single,Other,N,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guizhou",NA,NA,NA,NA,NA,NA,2006,NA,2015,NA,1,1,1,1,Yes
rapid detection of mers coronavirus-like viruses in bats: potential for tracking mers coronavirus transmission and animal origin,Woo et al.,Emerg Microbes Infect,2018,7,0,0,Vespertilionidae,Myotis,Myotis pilosus,1,betacoronavirus,Merbecovirus,Ty-BatCoV-HKU4 and Pi-BatCoV-HKU5,pooled,cross-sectional,Lateral Flow Immunoassay,Lateral flow immunoassay,single,Other,N,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guizhou",NA,NA,NA,NA,NA,NA,2006,NA,2015,NA,1,1,1,1,Yes
rapid detection of mers coronavirus-like viruses in bats: potential for tracking mers coronavirus transmission and animal origin,Woo et al.,Emerg Microbes Infect,2018,8,0,0,Miniopteridae,Miniopterus,Miniopterus pusillus,1,betacoronavirus,Merbecovirus,Ty-BatCoV-HKU4 and Pi-BatCoV-HKU5,pooled,cross-sectional,Lateral Flow Immunoassay,Lateral flow immunoassay,single,Other,N,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guizhou",NA,NA,NA,NA,NA,NA,2006,NA,2015,NA,1,1,1,1,Yes
rapid detection of mers coronavirus-like viruses in bats: potential for tracking mers coronavirus transmission and animal origin,Woo et al.,Emerg Microbes Infect,2018,9,0,0,Pteropodidae,Rousettus,Rousettus leschenaultii,1,betacoronavirus,Merbecovirus,Ty-BatCoV-HKU4 and Pi-BatCoV-HKU5,pooled,cross-sectional,Lateral Flow Immunoassay,Lateral flow immunoassay,single,Other,N,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guizhou",NA,NA,NA,NA,NA,NA,2006,NA,2015,NA,1,1,1,1,Yes
rapid detection of mers coronavirus-like viruses in bats: potential for tracking mers coronavirus transmission and animal origin,Woo et al.,Emerg Microbes Infect,2018,20,0,0,Hipposideridae,Hipposideros,Hipposideros pomona,1,betacoronavirus,Merbecovirus,Ty-BatCoV-HKU4 and Pi-BatCoV-HKU5,pooled,cross-sectional,Lateral Flow Immunoassay,Lateral flow immunoassay,single,Other,N,"faecal, rectal, or anal",tissue,China,"Hong Kong, Guizhou",NA,NA,NA,NA,NA,NA,2006,NA,2015,NA,1,1,1,1,Yes
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,14,0,0,Mormoopidae,Pteronotus,Pteronotus parnellii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,"Palo Verde, Santa Rosa",NA,NA,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,2,0,0,Mormoopidae,Pteronotus,Pteronotus gymnonotus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,Palo Verde,10.35394444,-85.32936111,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,6,0,0,Phyllostomidae,Carollia,Carollia subrufa,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,"Palo Verde, Nandayure",NA,NA,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,49,1,0.020408,Phyllostomidae,Carollia,Carollia perspicillata,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,NA,NA,NA,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,18,0,0,Phyllostomidae,Carollia,Carollia sowelli,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,NA,NA,NA,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,16,1,0.0625,Phyllostomidae,Carollia,Carollia castanea,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,NA,NA,NA,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,76,1,0.013158,Phyllostomidae,Artibeus,Artibeus jamaicensis,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,NA,NA,NA,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,7,0,0,Phyllostomidae,Artibeus,Artibeus lituratus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,"Palo Verde, San Jose, Santa Rosa",NA,NA,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,8,0,0,Phyllostomidae,Dermanura,Dermanura watsoni,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,"Tirimbina Biological Station, Nandayure, Santa Rosa",NA,NA,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,1,0,0,Phyllostomidae,Dermanura,Dermanura phaeotis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,Parrita,9.896111111,-84.40069444,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,6,0,0,Phyllostomidae,Vampyressa,Vampyressa nymphaea,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,"Tirimbina Biological Station, Parrita",NA,NA,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,7,0,0,Phyllostomidae,Uroderma,Uroderma bilobatum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,NA,NA,NA,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,2,0,0,Phyllostomidae,Platyrrhinus,Platyrrhinus vittatus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,Virgen del Socorro,10.29219444,-84.12258333,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,2,0,0,Phyllostomidae,Platyrrhinus,Platyrrhinus helleri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,"Parrita, Santa Rosa",NA,NA,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,27,0,0,Phyllostomidae,Desmodus,Desmodus rotundus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,NA,NA,NA,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,21,1,0.047619,Phyllostomidae,Glossophaga,Glossophaga soricina,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,NA,NA,NA,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,7,0,0,Phyllostomidae,Glossophaga,Glossophaga commissarisi,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,San Jose,9.938694444,-84.04522222,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,2,0,0,Phyllostomidae,Hylonycteris,Hylonycteris underwoodi,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,Virgen del Socorro,10.29219444,-84.12258333,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,1,0,0,Phyllostomidae,Anoura,Anoura cultrata,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,Palo Verde,10.35394444,-85.32936111,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,11,0,0,Phyllostomidae,Sturnira,Sturnira ludovici,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,"Virgen del Socorro, San Jose",NA,NA,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,6,0,0,Phyllostomidae,Sturnira,Sturnira lilium,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,"Palo Verde, Virgen del Socorro, San Jose",NA,NA,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,1,0,0,Phyllostomidae,Sturnira,Sturnira mordax,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,Virgen del Socorro,10.29219444,-84.12258333,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,2,0,0,Phyllostomidae,Lampronycteris,Lampronycteris brachyotis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,Palo Verde,10.35394444,-85.32936111,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,3,0,0,Phyllostomidae,Trachops,Trachops cirrhosus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,Palo Verde,10.35394444,-85.32936111,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,1,0,0,Phyllostomidae,Lophostoma,Lophostoma silvicolum,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,Palo Verde,10.35394444,-85.32936111,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,2,0,0,Phyllostomidae,Lophostoma,Lophostoma brasiliense,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,Tirimbina Biological Station,10.41705556,-84.12372222,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,1,0,0,Phyllostomidae,Tonatia,Tonatia saurophila,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,Tirimbina Biological Station,10.41705556,-84.12372222,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,1,0,0,Phyllostomidae,Micronycteris,Micronycteris microtis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,Bolson,10.35155556,-85.41827778,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,1,0,0,Phyllostomidae,Lonchorhina,Lonchorhina aurita,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,Tirimbina Biological Station,10.41705556,-84.12372222,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,10,0,0,Vespertilionidae,Eptesicus,Eptesicus brasiliensis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,Tirimbina Biological Station,10.41705556,-84.12372222,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,3,0,0,Vespertilionidae,Eptesicus,Eptesicus furinalis,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,Tirimbina Biological Station,10.41705556,-84.12372222,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,3,0,0,Vespertilionidae,Eptesicus,Eptesicus fuscus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,San Jose,9.938694444,-84.04522222,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,4,0,0,Vespertilionidae,Myotis,Myotis nigricans,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,"Tirimbina Biological Station, Sarapiqui",NA,NA,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,1,0,0,Vespertilionidae,Myotis,Myotis elegans,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,Tirimbina Biological Station,10.41705556,-84.12372222,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,3,0,0,Vespertilionidae,Rhogeessa,Rhogeessa tumida,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,"Palo Verde, Santa Rosa",NA,NA,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,1,0,0,Vespertilionidae,Rhogeessa,Rhogeessa io,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,Sarapiqui,10.40305556,-84.13377778,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,5,0,0,Noctilionidae,Noctilio,Noctilio albiventris,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,Palo Verde,10.35394444,-85.32936111,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,65,0,0,Molossidae,Molossus,Molossus sinaloae,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,"Sarapiqui, Nicoya",NA,NA,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,5,0,0,Molossidae,Molossus,Molossus rufus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,San Jose,9.938694444,-84.04522222,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,1,0,0,Molossidae,Eumops,Eumops glaucinus,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,Puntarenas,9.977611111,-84.83797222,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
neotropical bats from costa rica harbour diverse coronaviruses,Moreira-Soto et al.,Zoonoses Public Health,2015,2,0,0,Emballonuridae,Saccopteryx,Saccopteryx bilineata,1,genus not specified,NA,NA,pooled,longitudinal,PCR,pancoronavirus RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",pooled,Costa Rica,NA,Puntarenas,9.977611111,-84.83797222,NA,NA,NA,2012,NA,2014,NA,1,1,1,1,No
severe acute respiratory syndrome coronavirus-like virus in chinese horseshoe bats,Lau et al.,Proceedings of The National Academy of Sciences of The United States of America,2005,12,0,0,Hipposideridae,Hipposideros,Hipposideros armiger,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Hong Kong,11 sites,NA,NA,NA,NA,NA,2004,NA,2005,NA,1,1,1,1,No
severe acute respiratory syndrome coronavirus-like virus in chinese horseshoe bats,Lau et al.,Proceedings of The National Academy of Sciences of The United States of America,2005,23,0,0,Miniopteridae,Miniopterus,Miniopterus magnater,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Hong Kong,11 sites,NA,NA,NA,NA,NA,2004,NA,2005,NA,1,1,1,1,No
severe acute respiratory syndrome coronavirus-like virus in chinese horseshoe bats,Lau et al.,Proceedings of The National Academy of Sciences of The United States of America,2005,24,0,0,Miniopteridae,Miniopterus,Miniopterus pusillus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Hong Kong,11 sites,NA,NA,NA,NA,NA,2004,NA,2005,NA,1,1,1,1,No
severe acute respiratory syndrome coronavirus-like virus in chinese horseshoe bats,Lau et al.,Proceedings of The National Academy of Sciences of The United States of America,2005,3,0,0,Vespertilionidae,Myotis,Myotis chinensis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Hong Kong,11 sites,NA,NA,NA,NA,NA,2004,NA,2005,NA,1,1,1,1,No
severe acute respiratory syndrome coronavirus-like virus in chinese horseshoe bats,Lau et al.,Proceedings of The National Academy of Sciences of The United States of America,2005,2,0,0,Vespertilionidae,Myotis,Myotis pilosus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Hong Kong,11 sites,NA,NA,NA,NA,NA,2004,NA,2005,NA,1,1,1,1,No
severe acute respiratory syndrome coronavirus-like virus in chinese horseshoe bats,Lau et al.,Proceedings of The National Academy of Sciences of The United States of America,2005,2,0,0,Vespertilionidae,Nyctalus,Nyctalus noctula,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Hong Kong,11 sites,NA,NA,NA,NA,NA,2004,NA,2005,NA,1,1,1,1,No
severe acute respiratory syndrome coronavirus-like virus in chinese horseshoe bats,Lau et al.,Proceedings of The National Academy of Sciences of The United States of America,2005,2,0,0,Rhinolophidae,Rhinolophus,Rhinolophus affinis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,China,Hong Kong,11 sites,NA,NA,NA,NA,NA,2004,NA,2005,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,2,1,0.5,Megadermatidae,Cardioderma,Cardioderma cor,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,22,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,1,0,0,Megadermatidae,Cardioderma,Cardioderma cor,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,26,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,5,1,0.2,Megadermatidae,Cardioderma,Cardioderma cor,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,43,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,8,0,0,Molossidae,Chaerephon,Chaerephon pumilus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,18,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,1,0,0,Molossidae,Chaerephon,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,18,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,7,1,0.142857,Molossidae,Chaerephon,NA,NA,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,23,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,32,5,0.15625,Molossidae,Chaerephon,NA,NA,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,27,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,14,2,0.142857,Molossidae,Chaerephon,NA,NA,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,33,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,12,0,0,Molossidae,Chaerephon,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,36,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,25,4,0.16,Molossidae,Chaerephon,NA,NA,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,37,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,22,0,0,Molossidae,Chaerephon,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,38,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,69,0,0,Emballonuridae,Coleura,Coleura afra,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,13,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,16,0,0,Emballonuridae,Coleura,Coleura afra,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,26,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,141,28,0.198582,Pteropodidae,Eidolon,Eidolon helvum,1,betacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,4,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,30,10,0.333333,Pteropodidae,Eidolon,Eidolon helvum,1,betacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,18,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,7,0,0,Pteropodidae,Eidolon,Eidolon helvum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,21,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,3,0,0,Pteropodidae,Eidolon,Eidolon helvum,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,44,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,9,3,0.333333,Pteropodidae,Epomophorus,Epomophorus labiatus,1,betacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,18,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,17,6,0.352941,Pteropodidae,Epomophorus,Epomophorus labiatus,1,betacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,27,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,8,0,0,Pteropodidae,Epomophorus,Epomophorus labiatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,38,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,1,1,1,Pteropodidae,Epomophorus,Epomophorus labiatus,1,betacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,NA,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,11,0,0,Pteropodidae,Epomophorus,Epomophorus wahlbergi,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,22,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,16,1,0.0625,Pteropodidae,Epomophorus,Epomophorus wahlbergi,1,betacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,23,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,5,1,0.2,Pteropodidae,Epomophorus,Epomophorus wahlbergi,1,betacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,35,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,3,1,0.333333,Pteropodidae,Epomophorus,Epomophorus wahlbergi,1,betacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,41,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,28,1,0.035714,Pteropodidae,Epomophorus,Epomophorus wahlbergi,1,betacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,44,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,98,1,0.010204,Hipposideridae,Hipposideros,Hipposideros vittatus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,13,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,25,0,0,Hipposideridae,Hipposideros,Hipposideros vittatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,14,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,3,0,0,Hipposideridae,Hipposideros,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,5,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,57,15,0.263158,Hipposideridae,Hipposideros,NA,NA,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,22,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,7,0,0,Hipposideridae,Hipposideros,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,26,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,1,1,1,Hipposideridae,Hipposideros,NA,NA,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,NA,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,9,0,0,Pteropodidae,Myonycteris,Myonycteris angolensis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,5,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,1,0,0,Miniopteridae,Miniopterus,Miniopterus inflatus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,10,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,2,1,0.5,Miniopteridae,Miniopterus,Miniopterus inflatus,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,5,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,262,63,0.240458,Miniopteridae,Miniopterus,Miniopterus minor,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,13,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,29,2,0.068966,Miniopteridae,Miniopterus,Miniopterus minor,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,26,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,1,1,1,Miniopteridae,Miniopterus,Miniopterus minor,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,44,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,53,0,0,Miniopteridae,Miniopterus,Miniopterus natalensis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,1,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,1,0,0,Miniopteridae,Miniopterus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,10,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,1,0,0,Miniopteridae,Miniopterus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,13,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,156,5,0.032051,Miniopteridae,Miniopterus,NA,NA,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,20,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,135,13,0.096296,Miniopteridae,Miniopterus,NA,NA,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,25,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,7,0,0,Miniopteridae,Miniopterus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,26,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,16,0,0,Vespertilionidae,Neoromicia,Neoromicia tenuipinnis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,27,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,10,0,0,Vespertilionidae,Neoromicia,Neoromicia tenuipinnis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,37,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,7,0,0,Vespertilionidae,Neoromicia,Neoromicia tenuipinnis,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,38,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,3,0,0,Vespertilionidae,Neoromicia,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,22,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,11,0,0,Vespertilionidae,Neoromicia,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,23,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,20,0,0,Vespertilionidae,Neoromicia,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,27,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,35,10,0.285714,Molossidae,Otomops,Otomops martiensseni,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,23,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,2,0,0,Vespertilionidae,Pipistrellus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,38,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,1,0,0,Vespertilionidae,Pipistrellus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,42,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,1,0,0,Vespertilionidae,Pipistrellus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,7,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,1,0,0,Vespertilionidae,Pipistrellus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,23,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,7,2,0.285714,Rhinolophidae,Rhinolophus,Rhinolophus hildebrandtii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,36,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,7,3,0.428571,Rhinolophidae,Rhinolophus,Rhinolophus hildebrandtii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,41,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus hildebrandtii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,42,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,1,0,0,Rhinolophidae,Rhinolophus,Rhinolophus hildebrandtii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,10,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,16,3,0.1875,Rhinolophidae,Rhinolophus,Rhinolophus landeri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,20,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,23,4,0.173913,Rhinolophidae,Rhinolophus,Rhinolophus landeri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,25,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,19,0,0,Rhinolophidae,Rhinolophus,Rhinolophus landeri,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,45,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,16,10,0.625,Rhinolophidae,Rhinolophus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,19,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,7,1,0.142857,Rhinolophidae,Rhinolophus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,20,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,2,1,0.5,Rhinolophidae,Rhinolophus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,24,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,1,0,0,Rhinolophidae,Rhinolophus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,10,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,18,0,0,Rhinolophidae,Rhinolophus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,13,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,1,1,1,Rhinolophidae,Rhinolophus,NA,NA,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,20,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,79,5,0.063291,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,23,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,21,0,0,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,24,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,155,3,0.019355,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,NA,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,141,10,0.070922,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,1,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,1,1,1,Pteropodidae,Rousettus,Rousettus aegyptiacus,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,2,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,22,0,0,Miniopteridae,Miniopterus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,13,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,1,0,0,Miniopteridae,Miniopterus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,16,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,1,0,0,Miniopteridae,Miniopterus,NA,NA,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,21,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,6,1,0.166667,Vespertilionidae,Scotophilus,Scotophilus dinganii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,22,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,3,0,0,Vespertilionidae,Scotophilus,Scotophilus dinganii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,27,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,5,0,0,Vespertilionidae,Scotophilus,Scotophilus dinganii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,36,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,15,2,0.133333,Hipposideridae,Triaenops,Triaenops afer,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,22,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
surveillance of bat coronaviruses in kenya identifies relatives of human coronaviruses nl63 and 229e and their recombination history,Tao et al.,J Virol,2017,15,6,0.4,Hipposideridae,Triaenops,Triaenops afer,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,RT-PCR,single,RdRp,RdRp,pooled swabs/samples,swab,Kenya,NA,26,NA,NA,NA,NA,NA,2007,NA,2010,NA,1,1,1,1,No
detection of potentially novel paramyxovirus and coronavirus viral rna in bats and rats in the mekong delta region of southern viet nam,Berto et al.,Zoonoses Public Health,2018,222,0,0,Vespertilionidae,Scotophilus,Scotophilus kuhlii,1,genus not specified,NA,NA,pooled,cross-sectional,PCR,nested PCR,multiple,RdRp,RdRp,urinary,tissue,Vietnam,NA,three bat farms and three wet markets trading in rat meat in the Mekong Delta region,NA,NA,6,NA,NA,2012,NA,2014,NA,1,1,1,1,No
detection of potentially novel paramyxovirus and coronavirus viral rna in bats and rats in the mekong delta region of southern viet nam,Berto et al.,Zoonoses Public Health,2018,248,55,0.221774,Vespertilionidae,Scotophilus,Scotophilus kuhlii,1,alphacoronavirus,NA,NA,pooled,cross-sectional,PCR,nested PCR,multiple,RdRp,RdRp,"faecal, rectal, or anal",faeces,Vietnam,NA,three bat farms and three wet markets trading in rat meat in the Mekong Delta region,NA,NA,6,NA,NA,2012,NA,2014,NA,1,1,1,1,No
discovery of a rich gene pool of bat sars-related coronaviruses provides new insights into the origin of sars coronavirus,Hu et al.,Plos Pathog,2017,39,19,0.487179,Rhinolophidae,Rhinolophus,"Rhinolophus sinicus,Rhinolophus ferrumequinum",2,betacoronavirus,Sarbecovirus,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,China,Yunnan,Kunning city cave,NA,NA,8,2012,September,2011,April,2015,October,0,1,0,0,No
"detection of severe acute respiratory syndrome-like, middle east respiratory syndrome-like bat coronaviruses and group h rotavirus in faeces of korean bats",Kim et al.,Transbound Emerg Dis,2016,5,0,0,Vespertilionidae,Myotis,"Myotis aurascens,Myotis petax",2,genus not specified,NA,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,South Korea,Taebaek,YY Cave,NA,NA,NA,2015,August,2015,August,2015,November,1,0,0,0,No
"detection of severe acute respiratory syndrome-like, middle east respiratory syndrome-like bat coronaviruses and group h rotavirus in faeces of korean bats",Kim et al.,Transbound Emerg Dis,2016,3,0,0,Vespertilionidae,Myotis,"Myotis aurascens,Myotis petax",2,genus not specified,NA,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,South Korea,Taebaek,YY Cave,NA,NA,NA,2015,October,2015,August,2015,November,0,1,0,0,No
"detection of severe acute respiratory syndrome-like, middle east respiratory syndrome-like bat coronaviruses and group h rotavirus in faeces of korean bats",Kim et al.,Transbound Emerg Dis,2016,1,0,0,Vespertilionidae,Myotis,"Myotis aurascens,Myotis petax",2,genus not specified,NA,NA,repeat,longitudinal,PCR,RT-PCR,single,RdRp,RdRp,"faecal, rectal, or anal",faeces,South Korea,Taebaek,YY Cave,NA,NA,NA,2015,November,2015,August,2015,November,0,1,0,0,No