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+1
-1
lines changedSubmodule vcell_submodule updated 40 files
- vcell-client/src/main/java/cbit/vcell/client/ClientRequestManager.java+2-2
- vcell-client/src/main/java/cbit/vcell/client/task/RunSims.java+2-1
- vcell-client/src/main/java/cbit/vcell/geometry/gui/SurfaceViewer.java+1-1
- vcell-client/src/main/java/cbit/vcell/graph/gui/BioCartoonTool.java+19-59
- vcell-core/src/main/java/cbit/vcell/biomodel/BioModel.java+19-28
- vcell-core/src/main/java/cbit/vcell/bionetgen/BNGMolecule.java+11
- vcell-core/src/main/java/cbit/vcell/bionetgen/BNGOutputSpec.java+45
- vcell-core/src/main/java/cbit/vcell/bionetgen/BNGParameter.java+4
- vcell-core/src/main/java/cbit/vcell/bionetgen/BNGReaction.java+18
- vcell-core/src/main/java/cbit/vcell/bionetgen/BNGReactionRule.java+16
- vcell-core/src/main/java/cbit/vcell/bionetgen/BNGSpecies.java+9-1
- vcell-core/src/main/java/cbit/vcell/bionetgen/BNGSpeciesComponent.java+11
- vcell-core/src/main/java/cbit/vcell/bionetgen/ObservableGroup.java+15
- vcell-core/src/main/java/cbit/vcell/clientdb/ClientDocumentManager.java+15-61
- vcell-core/src/main/java/cbit/vcell/geometry/surface/AbstractPolygon.java+1-1
- vcell-core/src/main/java/cbit/vcell/geometry/surface/FastSurface.java+6
- vcell-core/src/main/java/cbit/vcell/geometry/surface/OrigSurface.java+10
- vcell-core/src/main/java/cbit/vcell/geometry/surface/Polygon.java+2
- vcell-core/src/main/java/cbit/vcell/geometry/surface/Quadrilateral.java+4
- vcell-core/src/main/java/cbit/vcell/geometry/surface/Triangle.java+3-1
- vcell-core/src/main/java/cbit/vcell/mapping/LegacySimContextTransformer.java+4-2
- vcell-core/src/main/java/cbit/vcell/mapping/NetworkTransformer.java+6-4
- vcell-core/src/main/java/cbit/vcell/mapping/RateRuleTransformer.java+8-59
- vcell-core/src/main/java/cbit/vcell/mapping/RulebasedTransformer.java+19-52
- vcell-core/src/main/java/cbit/vcell/math/JumpCondition.java+18
- vcell-core/src/main/java/cbit/vcell/math/MathDescription.java+5-5
- vcell-core/src/main/java/cbit/vcell/simdata/SimulationData.java+1-1
- vcell-core/src/main/java/cbit/vcell/solver/AnnotatedFunction.java+4
- vcell-core/src/main/java/cbit/vcell/solver/test/MathTestingUtilities.java+13-43
- vcell-core/src/main/java/cbit/vcell/solvers/FiniteVolumeFileWriter.java+21-92
- vcell-core/src/main/java/cbit/vcell/solvers/MovingBoundarySolver.java+7-7
- vcell-core/src/main/java/cbit/vcell/xml/XmlHelper.java+80-25
- vcell-core/src/main/java/cbit/vcell/xml/Xmlproducer.java+2-2
- vcell-core/src/main/java/org/vcell/optimization/OptXmlWriter.java+16-34
- vcell-core/src/main/java/org/vcell/sbml/vcell/SBMLImporter.java+7-6
- vcell-core/src/main/java/org/vcell/solver/smoldyn/SmoldynFileWriter.java+20-82
- vcell-core/src/main/java/org/vcell/solver/smoldyn/SmoldynSurfaceTessellator.java+16-41
- vcell-core/src/test/java/org/vcell/sbml/BMDB_SBMLImportTest.java+5-2
- vcell-math/src/main/java/cbit/vcell/parser/Expression.java+16-1
- vcell-server/src/main/java/cbit/vcell/modeldb/ServerDocumentManager.java+1-1
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