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simplified tutorial notebook #6

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vitkl opened this issue Feb 24, 2020 · 1 comment

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vitkl commented Feb 24, 2020

I tried the hepatocyte notebook and got an error in the first chunk related to singleCellExperiment

> hepatocytes = SingleCellExperiment(assays = list(counts = data),+ colData = design)
Error in `rownames<-`(`*tmp*`, value = .get_colnames_from_assays(assays)) :   invalid rownames length

Would it be possible for you to simplify this example and start with the pcs4arch data?

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vitkl commented Dec 23, 2020

It is better to replace this with Seurat.

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