To do

[vmikk]

• Switch to the p-ranks for Z-score categorization (instead of absolute values).
  For details, see https://biodiverse-analysis-software.blogspot.com/2023/04/changes-to-randomisation-results-p-rank.html

• Automatically select Biodiverse subroutines given a diversity index

• Automatically fetch the latest container version for CI tests.
  E.g., somehow set the value for this line based on a variable or container configs:
  

  PhyloNext/.github/workflows/Biodiverse_test.yml

  Line 10 in 8a6399d

  image: vmikk/biodiverse:1.0.0

• Set up test caches

• Add unit tests (see Testing of pipeline output nf-core/tools#605)

• Find a way how to estimate coverage for "heterogeneous" code (R, Python, Perl, and Groovy)

• Add digital signature to Singularity images

• Update Biodiverse to 4.3 (released 01 May 2023)

• Update Biodiverse to version 4 (released 26 November 2022!)

• Add CI tests

• OpenTree filtering - use tree tips with phylogeny support only

• Add JSON schema describing pipeline parameters