[MOMSI_G:00094] Genomics Example (Real)

[lnanderson]

Standard Type

Reporting Guideline

Status

Established

Country

United Kingdom, United States

Domain Class/Subclass

Epigenomics

Application Technology

RNA Sequencing

Standard Name

Minimum Information about a Single-Cell Experiment

Acronym

minSCe

Plan

Experimental Design

Collect

All of the above

Process

Metadata Collection

Analysis

Interpretation Analysis

Preservation

Metadata Storage

Sharing

All of the above

Reuse

Conditional based on linked standards

Meets Criteria

• Meets criteria for the Omics Standards Collection at FAIRsharing

Active Affiliation(s)

European Bioinformatics Institute (EBI) Gene Expression Group

Homepage

https://github.com/ebi-gene-expression-group/sc-metadata-fields

Reference Article Citation (DOI)

https://doi.org/10.1038/s41587-020-00744-z

Reference Source Code (DOI or URL)

No response

FAIRsharing Record (DOI or URL)

https://doi.org/10.25504/FAIRsharing.77c3d3

Contributor Name

Lindsey Anderson

Contributor ORCID ID

0000-0002-8741-7823

CRediT

"Data curation, Writing - review & editing"

Comments

This standard is an adaptation to the MAGE-TAB v1.1 format for capturing the necessary metadata for single-cell RNA-sequencing experiments enabling automated re-processing. This standard is used for the EMBL-EBI Single Cell Expression Atlas. NOTE: These templates contain all fields used for processing of plate- and droplet-based experiments but they do not represent the list of mandatory fields, nor do they include the list of mandatory sample attributes curators aim to annotate all samples with.