From d40f2c59d9a275e17ae0d56ffc0980ad8464866d Mon Sep 17 00:00:00 2001
From: Paul Wiggins <pawggins@gmail.com>
Date: Tue, 14 Aug 2018 10:54:50 -0700
Subject: [PATCH] added code into frameLink/errorRez.m to revent cells from
 being created with ID == 0. This shouldnt happen but I added an extra backup
 mechanism to prevent this from occuring.

---
 frameLink/errorRez.m | 16 ++++++++++++++--
 1 file changed, 14 insertions(+), 2 deletions(-)

diff --git a/frameLink/errorRez.m b/frameLink/errorRez.m
index 4c493a6..768eb96 100644
--- a/frameLink/errorRez.m
+++ b/frameLink/errorRez.m
@@ -58,6 +58,11 @@
 modRegions = [];
 
 for regNum =  1 : data_c.regs.num_regs
+    
+%     if regNum == 37;
+%         'hi'
+%     end
+    
     if isfield (data_c.regs, 'manual_link')
         manual_link = data_c.regs.manual_link.r(regNum);
     else
@@ -301,8 +306,13 @@
             end
             
         end
-        
     end
+    
+    % if the current ID is still zero, make a new cell
+    if data_c.regs.ID(regNum) == 0
+          [data_c,cell_count] = createNewCell (data_c, regNum, time, cell_count);        
+    end
+    
 end
 %intDisplay (data_c,regToDelete,data_f,[]);
 [data_c] = deleteRegions( data_c,regToDelete);
@@ -318,6 +328,7 @@ function intDisplay (data_c,regC,data_f,regF)
 % blue : all cell masks  in c
 
 
+
 maskC = data_c.regs.regs_label*0;
 for c = 1 : numel(regC)
     if ~isnan(regC(c))
@@ -336,7 +347,8 @@ function intDisplay (data_c,regC,data_f,regF)
                 maskF = maskF + (data_f.regs.regs_label == regF(f))>0;
             end
         end
-        imshow (cat(3,ag(maskF),ag(maskC),ag(data_c.mask_cell)));
+            imshow (cat(3,ag(maskF),ag(maskC),ag(data_c.mask_cell)));
+        
     end
 end
 end