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Update tsv, md and png files
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‎_data/WP1075-datanodes.tsv‎

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@@ -57,7 +57,7 @@ ATP Metabolite hmdb:HMDB0000538 "Adenosine triphosphate" chebi:15422 inchik
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Zinc Metabolite hmdb:HMDB0015532 "" chebi:29105 inchikey:PTFCDOFLOPIGGS-UHFFFAOYSA-N pubchem.compound:32051 hmdb:HMDB0015532 kegg.compound:C00038
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NO Metabolite hmdb:HMDB0003378 "Nitric oxide" chebi:16480 inchikey:MWUXSHHQAYIFBG-UHFFFAOYSA-N pubchem.compound:145068 chemspider:127983 hmdb:HMDB0003378 kegg.compound:C00533
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HOCl Metabolite hmdb:HMDB0001050 "Hypochlorite" chebi:24757 inchikey:QWPPOHNGKGFGJK-UHFFFAOYSA-N pubchem.compound:24341 hmdb:HMDB0001050 kegg.compound:C19697
60-
O3 Metabolite chebi:25812 "ozone" wikidata:Q36933 chebi:25812 inchikey:CBENFWSGALASAD-UHFFFAOYSA-N;inchikey:XQOAKYYZMDCSIA-UHFFFAOYSA-N pubchem.compound:24823;pubchem.compound:16206854 chemspider:23208;chemspider:13375217 hmdb:HMDB0035409
60+
O₃ Metabolite chebi:25812 "ozone" wikidata:Q36933 chebi:25812 inchikey:CBENFWSGALASAD-UHFFFAOYSA-N;inchikey:XQOAKYYZMDCSIA-UHFFFAOYSA-N pubchem.compound:24823;pubchem.compound:16206854 chemspider:23208;chemspider:13375217 hmdb:HMDB0035409
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NO₂ Metabolite chebi:33101 "Nitrogen dioxide" wikidata:Q207895 chebi:33101 inchikey:JCXJVPUVTGWSNB-UHFFFAOYSA-N pubchem.compound:3032552 chemspider:2297499 hmdb:HMDB0255649
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HNO₂ Metabolite chebi:25567 "Nitrous acid" wikidata:Q211891 chebi:25567 inchikey:IOVCWXUNBOPUCH-UHFFFAOYSA-N pubchem.compound:24529 chemspider:22936 hmdb:HMDB0002786 kegg.compound:C00088
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Riboflavin Metabolite hmdb:HMDB0000244 "" chebi:17015 inchikey:AUNGANRZJHBGPY-SCRDCRAPSA-N pubchem.compound:493570 chemspider:431981 hmdb:HMDB0000244 kegg.compound:C00255

‎_data/WP15-datanodes.tsv‎

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@@ -98,7 +98,7 @@ Leukotriene B4 Metabolite hmdb:HMDB0001085 "" chebi:15647 inchikey:VNYSSYRC
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Quinolinic Acid Metabolite hmdb:HMDB0000232 "" chebi:16675 inchikey:GJAWHXHKYYXBSV-UHFFFAOYSA-N pubchem.compound:1066 chemspider:144985 hmdb:HMDB0000232 kegg.compound:C03722
9999
PMP Metabolite hmdb:HMDB0001555 "Pyridoxamine 5'-phosphate" chebi:18335 inchikey:ZMJGSOSNSPKHNH-UHFFFAOYSA-N pubchem.compound:1053 chemspider:1024 hmdb:HMDB0001555 kegg.compound:C00647
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NO Metabolite hmdb:HMDB0003378 "Nitric oxide" chebi:16480 inchikey:MWUXSHHQAYIFBG-UHFFFAOYSA-N pubchem.compound:145068 chemspider:127983 hmdb:HMDB0003378 kegg.compound:C00533
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O3 Metabolite chebi:25812 "ozone" wikidata:Q36933 chebi:25812 inchikey:CBENFWSGALASAD-UHFFFAOYSA-N;inchikey:XQOAKYYZMDCSIA-UHFFFAOYSA-N pubchem.compound:24823;pubchem.compound:16206854 chemspider:23208;chemspider:13375217 hmdb:HMDB0035409
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O₃ Metabolite chebi:25812 "ozone" wikidata:Q36933 chebi:25812 inchikey:CBENFWSGALASAD-UHFFFAOYSA-N;inchikey:XQOAKYYZMDCSIA-UHFFFAOYSA-N pubchem.compound:24823;pubchem.compound:16206854 chemspider:23208;chemspider:13375217 hmdb:HMDB0035409
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HNO₂ Metabolite chebi:25567 "Nitrous acid" wikidata:Q211891 chebi:25567 inchikey:IOVCWXUNBOPUCH-UHFFFAOYSA-N pubchem.compound:24529 chemspider:22936 hmdb:HMDB0002786 kegg.compound:C00088
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NO₂ Metabolite chebi:33101 "Nitrogen dioxide" wikidata:Q207895 chebi:33101 inchikey:JCXJVPUVTGWSNB-UHFFFAOYSA-N pubchem.compound:3032552 chemspider:2297499 hmdb:HMDB0255649
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HOCl Metabolite hmdb:HMDB0001050 "Hypochlorite" chebi:24757 inchikey:QWPPOHNGKGFGJK-UHFFFAOYSA-N pubchem.compound:24341 hmdb:HMDB0001050 kegg.compound:C19697

‎_data/WP1533-datanodes.tsv‎

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@@ -49,7 +49,7 @@ Zinc Metabolite hmdb:HMDB0015532 "" chebi:29105 inchikey:PTFCDOFLOPIGGS-UHF
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NO Metabolite hmdb:HMDB0003378 "Nitric oxide" chebi:16480 inchikey:MWUXSHHQAYIFBG-UHFFFAOYSA-N pubchem.compound:145068 chemspider:127983 hmdb:HMDB0003378 kegg.compound:C00533
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NO3- Metabolite hmdb:HMDB0002878 "Nitrate" chebi:17632 inchikey:NHNBFGGVMKEFGY-UHFFFAOYSA-N pubchem.compound:943 chemspider:918 hmdb:HMDB0002878 kegg.compound:C00244
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NO₂ Metabolite chebi:33101 "Nitrogen dioxide" wikidata:Q207895 chebi:33101 inchikey:JCXJVPUVTGWSNB-UHFFFAOYSA-N pubchem.compound:3032552 chemspider:2297499 hmdb:HMDB0255649
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O3 Metabolite chebi:25812 "ozone" wikidata:Q36933 chebi:25812 inchikey:CBENFWSGALASAD-UHFFFAOYSA-N;inchikey:XQOAKYYZMDCSIA-UHFFFAOYSA-N pubchem.compound:24823;pubchem.compound:16206854 chemspider:23208;chemspider:13375217 hmdb:HMDB0035409
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O₃ Metabolite chebi:25812 "ozone" wikidata:Q36933 chebi:25812 inchikey:CBENFWSGALASAD-UHFFFAOYSA-N;inchikey:XQOAKYYZMDCSIA-UHFFFAOYSA-N pubchem.compound:24823;pubchem.compound:16206854 chemspider:23208;chemspider:13375217 hmdb:HMDB0035409
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HOCl Metabolite hmdb:HMDB0001050 "Hypochlorite" chebi:24757 inchikey:QWPPOHNGKGFGJK-UHFFFAOYSA-N pubchem.compound:24341 hmdb:HMDB0001050 kegg.compound:C19697
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HNO₂ Metabolite chebi:25567 "Nitrous acid" wikidata:Q211891 chebi:25567 inchikey:IOVCWXUNBOPUCH-UHFFFAOYSA-N pubchem.compound:24529 chemspider:22936 hmdb:HMDB0002786 kegg.compound:C00088
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N2O Metabolite chebi:17045 "Dinitrogen oxide</br>Nitrous oxide " wikidata:Q905750 chebi:17045 inchikey:GQPLMRYTRLFLPF-UHFFFAOYSA-N pubchem.compound:948 chemspider:923 hmdb:HMDB0035807 kegg.compound:C00887

‎_data/WP3193-datanodes.tsv‎

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@@ -48,7 +48,7 @@ Zinc Metabolite hmdb:HMDB0015532 "" chebi:29105 inchikey:PTFCDOFLOPIGGS-UHF
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NO Metabolite hmdb:HMDB0003378 "Nitric oxide" chebi:16480 inchikey:MWUXSHHQAYIFBG-UHFFFAOYSA-N pubchem.compound:145068 chemspider:127983 hmdb:HMDB0003378 kegg.compound:C00533
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NO3- Metabolite hmdb:HMDB0002878 "Nitrate" chebi:17632 inchikey:NHNBFGGVMKEFGY-UHFFFAOYSA-N pubchem.compound:943 chemspider:918 hmdb:HMDB0002878 kegg.compound:C00244
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NO₂ Metabolite chebi:33101 "Nitrogen dioxide" wikidata:Q207895 chebi:33101 inchikey:JCXJVPUVTGWSNB-UHFFFAOYSA-N pubchem.compound:3032552 chemspider:2297499 hmdb:HMDB0255649
51-
O3 Metabolite chebi:25812 "ozone" wikidata:Q36933 chebi:25812 inchikey:CBENFWSGALASAD-UHFFFAOYSA-N;inchikey:XQOAKYYZMDCSIA-UHFFFAOYSA-N pubchem.compound:24823;pubchem.compound:16206854 chemspider:23208;chemspider:13375217 hmdb:HMDB0035409
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O₃ Metabolite chebi:25812 "ozone" wikidata:Q36933 chebi:25812 inchikey:CBENFWSGALASAD-UHFFFAOYSA-N;inchikey:XQOAKYYZMDCSIA-UHFFFAOYSA-N pubchem.compound:24823;pubchem.compound:16206854 chemspider:23208;chemspider:13375217 hmdb:HMDB0035409
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HOCl Metabolite hmdb:HMDB0001050 "Hypochlorite" chebi:24757 inchikey:QWPPOHNGKGFGJK-UHFFFAOYSA-N pubchem.compound:24341 hmdb:HMDB0001050 kegg.compound:C19697
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HNO₂ Metabolite chebi:25567 "Nitrous acid" wikidata:Q211891 chebi:25567 inchikey:IOVCWXUNBOPUCH-UHFFFAOYSA-N pubchem.compound:24529 chemspider:22936 hmdb:HMDB0002786 kegg.compound:C00088
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N2O Metabolite chebi:17045 "Dinitrogen oxide</br>Nitrous oxide " wikidata:Q905750 chebi:17045 inchikey:GQPLMRYTRLFLPF-UHFFFAOYSA-N pubchem.compound:948 chemspider:923 hmdb:HMDB0035807 kegg.compound:C00887

‎_data/WP3257-datanodes.tsv‎

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@@ -98,7 +98,7 @@ Leukotriene B4 Metabolite hmdb:HMDB0001085 "" chebi:15647 inchikey:VNYSSYRC
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Quinolinic Acid Metabolite hmdb:HMDB0000232 "" chebi:16675 inchikey:GJAWHXHKYYXBSV-UHFFFAOYSA-N pubchem.compound:1066 chemspider:144985 hmdb:HMDB0000232 kegg.compound:C03722
9999
PMP Metabolite hmdb:HMDB0001555 "Pyridoxamine 5'-phosphate" chebi:18335 inchikey:ZMJGSOSNSPKHNH-UHFFFAOYSA-N pubchem.compound:1053 chemspider:1024 hmdb:HMDB0001555 kegg.compound:C00647
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NO Metabolite hmdb:HMDB0003378 "Nitric oxide" chebi:16480 inchikey:MWUXSHHQAYIFBG-UHFFFAOYSA-N pubchem.compound:145068 chemspider:127983 hmdb:HMDB0003378 kegg.compound:C00533
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O3 Metabolite chebi:25812 "ozone" wikidata:Q36933 chebi:25812 inchikey:CBENFWSGALASAD-UHFFFAOYSA-N;inchikey:XQOAKYYZMDCSIA-UHFFFAOYSA-N pubchem.compound:24823;pubchem.compound:16206854 chemspider:23208;chemspider:13375217 hmdb:HMDB0035409
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O₃ Metabolite chebi:25812 "ozone" wikidata:Q36933 chebi:25812 inchikey:CBENFWSGALASAD-UHFFFAOYSA-N;inchikey:XQOAKYYZMDCSIA-UHFFFAOYSA-N pubchem.compound:24823;pubchem.compound:16206854 chemspider:23208;chemspider:13375217 hmdb:HMDB0035409
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HNO₂ Metabolite chebi:25567 "Nitrous acid" wikidata:Q211891 chebi:25567 inchikey:IOVCWXUNBOPUCH-UHFFFAOYSA-N pubchem.compound:24529 chemspider:22936 hmdb:HMDB0002786 kegg.compound:C00088
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NO₂ Metabolite chebi:33101 "Nitrogen dioxide" wikidata:Q207895 chebi:33101 inchikey:JCXJVPUVTGWSNB-UHFFFAOYSA-N pubchem.compound:3032552 chemspider:2297499 hmdb:HMDB0255649
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HOCl Metabolite hmdb:HMDB0001050 "Hypochlorite" chebi:24757 inchikey:QWPPOHNGKGFGJK-UHFFFAOYSA-N pubchem.compound:24341 hmdb:HMDB0001050 kegg.compound:C19697

‎_pathways/WP1075.md‎

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@@ -16,15 +16,15 @@ description: The folic acid-centred micronutrient biological network. The most r
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biochemical processes related to folic acid in the context of metabolism, oxidation
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and inflammation are represented. Also, the compartmental separation (intracellular
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vs. plasma) is presented, identifying the folic acid centred plasma metabolome.
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last-edited: 2025-12-11
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ndex: null
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organisms:
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- Bos taurus
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redirect_from:
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- /index.php/Pathway:WP1075
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- /instance/WP1075
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- /instance/WP1075_r140272
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revision: r140272
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- /instance/WP1075_r142183
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revision: r142183
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schema-jsonld:
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- '@context': https://schema.org/
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'@id': https://wikipathways.github.io/pathways/WP1075.html
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- 'NO'
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- NO₂
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- Nitrotyrosine
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- O3
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- ONOO/ONOOH
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- O₂
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- O₃
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- PGE1
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- PGE2
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- PGF2a

‎_pathways/WP15.md‎

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---
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annotations:
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- id: PW:0000133
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parent: classic metabolic pathway
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type: Pathway Ontology
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value: selenoamino acid metabolic pathway
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- id: PW:0000002
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parent: classic metabolic pathway
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type: Pathway Ontology
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value: classic metabolic pathway
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- id: PW:0000133
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parent: classic metabolic pathway
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type: Pathway Ontology
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value: selenoamino acid metabolic pathway
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authors:
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- Egoyenechea
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- AlexanderPico
@@ -68,15 +68,15 @@ description: 'The selenium-centred micronutrient biological network. The most re
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vs. plasma) is presented, identifying the selenium centred plasma metabolome. A
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selenoprotein database exists at: http://www.selenodb.org. Proteins on this pathway
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have targeted assays available via the [CPTAC Assay Portal](https://assays.cancer.gov/available_assays?wp_id=WP15)'
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last-edited: 2025-12-11
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ndex: c06a6a39-8b61-11eb-9e72-0ac135e8bacf
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organisms:
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- Homo sapiens
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redirect_from:
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- /index.php/Pathway:WP15
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- /instance/WP15
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- /instance/WP15_r140336
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revision: r140336
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- /instance/WP15_r142179
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revision: r142179
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schema-jsonld:
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- '@context': https://schema.org/
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'@id': https://wikipathways.github.io/pathways/WP15.html
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- Niacinamide
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- Nicotinamidase
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- Nitrotyrosine
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- O3
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- ONOO-/ONOOH
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- O₂
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- O₂-radical (aka Hyperoxid or superoxide)
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- O₃
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- PAI-1
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- PGD2
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- PGE1

‎_pathways/WP1533.md‎

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@@ -71,15 +71,15 @@ description: Vitamin B12 is a water soluble, organic compound and essential nutr
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the synthesis of the citric acid cycle intermediates and succinyl-CoA, cyanocobalamin
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into methylcobalamin conversion, tyrosine nitration and riboflavin pathways. Proteins
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on this pathway have targeted assays available via the [CPTAC Assay Portal](https://assays.cancer.gov/available_assays?wp_id=WP1533).
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ndex: f4aac492-8b62-11eb-9e72-0ac135e8bacf
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organisms:
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- Homo sapiens
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redirect_from:
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- /index.php/Pathway:WP1533
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- /instance/WP1533
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- /instance/WP1533_r140437
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- /instance/WP1533_r142182
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revision: r142182
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schema-jsonld:
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- '@context': https://schema.org/
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'@id': https://wikipathways.github.io/pathways/WP1533.html
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- NO3-
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- NO₂
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- Nitrotyrosine
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- O3
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- ONOO-ONOOH
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- O₂
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- O₃
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- PAI-1
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- PGE1
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- PGE2

‎_pathways/WP3193.md‎

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---
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annotations:
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- id: DOID:13381
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parent: disease of metabolism
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type: Disease Ontology
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value: pernicious anemia
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- id: PW:0000397
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parent: classic metabolic pathway
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type: Pathway Ontology
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value: cobalamin metabolic pathway
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- id: DOID:13381
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parent: disease of metabolism
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type: Disease Ontology
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value: pernicious anemia
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authors:
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- Mkutmon
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- Egonw
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are interconnected. Central B12 metabolism nodes include folate metabolism and
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the synthesis of the citric acid cycle intermediates and succinyl-CoA, cyanocobalamin
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into methylcobalamin conversion, tyrosine nitration and riboflavin pathways.
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ndex: null
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organisms:
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- Bos taurus
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redirect_from:
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- /index.php/Pathway:WP3193
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- /instance/WP3193
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- /instance/WP3193_r140463
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- /instance/WP3193_r142181
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revision: r142181
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'@id': https://wikipathways.github.io/pathways/WP3193.html
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- NO3-
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- NO₂
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- Nitrotyrosine
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- O3
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- ONOO-ONOOH
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- O₂
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- O₃
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- PGE1
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- PGE2
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- PGF2a

‎_pathways/WP3257.md‎

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---
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annotations:
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- id: PW:0000002
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parent: classic metabolic pathway
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type: Pathway Ontology
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value: classic metabolic pathway
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- id: PW:0000133
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parent: classic metabolic pathway
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type: Pathway Ontology
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value: selenoamino acid metabolic pathway
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- id: PW:0000002
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parent: classic metabolic pathway
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type: Pathway Ontology
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value: classic metabolic pathway
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authors:
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- Mkutmon
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- Egonw
@@ -20,15 +20,15 @@ description: The selenium-centred micronutrient biological network. The most rel
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and inflammation are represented. Also, the compartmental separation (intracellular
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vs. plasma) is presented, identifying the selenium centred plasma metabolome. A
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selenoprotein database exists at [selenodb.org](https://www.selenodb.org).
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ndex: null
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organisms:
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- Bos taurus
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- /index.php/Pathway:WP3257
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- /instance/WP3257
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- /instance/WP3257_r140464
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- /instance/WP3257_r142180
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'@id': https://wikipathways.github.io/pathways/WP3257.html
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- Niacin
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- Niacinamide
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- Nitrotyrosine
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- O3
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- ONOO-/ONOOH
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- O₂
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- O₂-•
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- O₃
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- PGD2
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- PGE1
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- PGE2

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