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‎_data/WP1397-datanodes.tsv‎

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‎_data/WP2630-datanodes.tsv‎

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@@ -20,3 +20,4 @@ D-fructose-6-phosphate Metabolite pubchem.compound:3385 "" wikidata:Q238512
2020
4.1.1.49 GeneProduct eccode:4.1.1.49 ""
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4.1.2.13 GeneProduct eccode:4.1.2.13 ""
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3.1.3.11 GeneProduct eccode:3.1.3.11 ""
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5.3.1.9 GeneProduct eccode:5.3.1.9 ""

‎_data/WP3583-datanodes.tsv‎

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11
Label Type Identifier Comment Ensembl NCBI gene HGNC UniProt Wikidata ChEBI InChI PubChem ChemSpider HMDB KEGG LipidMaps
2-
G6P Metabolite kegg.compound:C00668 "" wikidata:Q27102512 chebi:17665 inchikey:NBSCHQHZLSJFNQ-DVKNGEFBSA-N pubchem.compound:439284 chemspider:388417 kegg.compound:C00668
32
F6P Metabolite kegg.compound:C05345 "" wikidata:Q27098371 chebi:16084 inchikey:BGWGXPAPYGQALX-ARQDHWQXSA-N pubchem.compound:440641 chemspider:389526 hmdb:HMDB0003971 kegg.compound:C05345
4-
FBP Metabolite kegg.compound:C05378 "" wikidata:Q414945 chebi:28013 inchikey:RNBGYGVWRKECFJ-ARQDHWQXSA-N pubchem.compound:10267 chemspider:9848 hmdb:HMDB0001058 kegg.compound:C05378
5-
PEP Metabolite kegg.compound:C00074 "" wikidata:Q412139 chebi:18021;chebi:44897 inchikey:DTBNBXWJWCWCIK-UHFFFAOYSA-N pubchem.compound:59658623;pubchem.compound:58114173;pubchem.compound:1005 chemspider:980 hmdb:HMDB0000263 kegg.compound:C00074
6-
PYR Metabolite kegg.compound:C00022 "" wikidata:Q213580 chebi:32816;chebi:15361 inchikey:LCTONWCANYUPML-UHFFFAOYSA-N pubchem.compound:1060 chemspider:1031 hmdb:HMDB0000243 kegg.compound:C00022 lipidmaps:LMFA01060077
7-
OAA Metabolite kegg.compound:C00036 "" wikidata:Q408658 chebi:30744;chebi:16452 inchikey:KHPXUQMNIQBQEV-UHFFFAOYSA-N pubchem.compound:970 chemspider:945 hmdb:HMDB0000223 kegg.compound:C00036 lipidmaps:LMFA01170061;lipidmaps:LMFA01170120
8-
6PG Metabolite kegg.compound:C00345 "" wikidata:Q245501 chebi:48928 inchikey:BIRSGZKFKXLSJQ-SQOUGZDYSA-N pubchem.compound:91493 chemspider:82615 hmdb:HMDB0001316 kegg.compound:C00345
3+
SUC-CoA Metabolite kegg.compound:C00091 "" wikidata:Q419560 chebi:15380 inchikey:VNOYUJKHFWYWIR-ITIYDSSPSA-N pubchem.compound:92133 chemspider:83179 hmdb:HMDB0001022 kegg.compound:C00091 lipidmaps:LMFA07050370
94
MAL Metabolite kegg.compound:C00149 "" wikidata:Q27104150 chebi:30797;chebi:15589 inchikey:BJEPYKJPYRNKOW-REOHCLBHSA-N pubchem.compound:222656 chemspider:193317 hmdb:HMDB0000156 kegg.compound:C00149
5+
G6P Metabolite kegg.compound:C00668 "" wikidata:Q27102512 chebi:17665 inchikey:NBSCHQHZLSJFNQ-DVKNGEFBSA-N pubchem.compound:439284 chemspider:388417 kegg.compound:C00668
6+
FBP Metabolite kegg.compound:C05378 "" wikidata:Q414945 chebi:28013 inchikey:RNBGYGVWRKECFJ-ARQDHWQXSA-N pubchem.compound:10267 chemspider:9848 hmdb:HMDB0001058 kegg.compound:C05378
7+
T3P Metabolite kegg.compound:C00197 "" wikidata:Q223118 chebi:17794 inchikey:OSJPPGNTCRNQQC-UWTATZPHSA-N pubchem.compound:439183 chemspider:388326 hmdb:HMDB0060180 kegg.compound:C00197
8+
2-OG Metabolite kegg.compound:C00026 "" wikidata:Q306140 chebi:16810;chebi:30915 inchikey:KPGXRSRHYNQIFN-UHFFFAOYSA-N pubchem.compound:156274072;pubchem.compound:51 chemspider:50 hmdb:HMDB0000208 kegg.compound:C00026
9+
Glucose Metabolite kegg.compound:C00221 "" wikidata:Q23905968 chebi:15903 inchikey:WQZGKKKJIJFFOK-VFUOTHLCSA-N pubchem.compound:64689 chemspider:58238 hmdb:HMDB0000122 kegg.compound:C00221
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FUM Metabolite kegg.compound:C00122 "" wikidata:Q139857 chebi:29806;chebi:18012 inchikey:VZCYOOQTPOCHFL-OWOJBTEDSA-N pubchem.compound:21883788;pubchem.compound:444972 chemspider:10197150 hmdb:HMDB0000134 kegg.compound:C00122
11+
Ace-CoA Metabolite kegg.compound:C00024 "" wikidata:Q715317 chebi:15351 inchikey:ZSLZBFCDCINBPY-ZSJPKINUSA-N pubchem.compound:444493 chemspider:392413 hmdb:HMDB0001206 kegg.compound:C00024 lipidmaps:LMFA07050281
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SUC Metabolite kegg.compound:C00042 "" wikidata:Q213050 chebi:15741 inchikey:KDYFGRWQOYBRFD-UHFFFAOYSA-N pubchem.compound:1110;pubchem.compound:1738118;pubchem.compound:21952380 chemspider:1078 hmdb:HMDB0000254 kegg.compound:C00042 lipidmaps:LMFA01170043
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SUC-CoA Metabolite kegg.compound:C00091 "" wikidata:Q419560 chebi:15380 inchikey:VNOYUJKHFWYWIR-ITIYDSSPSA-N pubchem.compound:92133 chemspider:83179 hmdb:HMDB0001022 kegg.compound:C00091 lipidmaps:LMFA07050370
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2-OG Metabolite kegg.compound:C00026 "" wikidata:Q306140 chebi:16810;chebi:30915 inchikey:KPGXRSRHYNQIFN-UHFFFAOYSA-N pubchem.compound:156274072;pubchem.compound:51 chemspider:50 hmdb:HMDB0000208 kegg.compound:C00026
13+
PYR Metabolite kegg.compound:C00022 "" wikidata:Q213580 chebi:32816;chebi:15361 inchikey:LCTONWCANYUPML-UHFFFAOYSA-N pubchem.compound:1060 chemspider:1031 hmdb:HMDB0000243 kegg.compound:C00022 lipidmaps:LMFA01060077
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ICT Metabolite kegg.compound:C00311 "" wikidata:Q288927 chebi:30887 inchikey:ODBLHEXUDAPZAU-UHFFFAOYSA-N pubchem.compound:1198 chemspider:1161 hmdb:HMDB0000193 kegg.compound:C00311
15+
OAA Metabolite kegg.compound:C00036 "" wikidata:Q408658 chebi:30744;chebi:16452 inchikey:KHPXUQMNIQBQEV-UHFFFAOYSA-N pubchem.compound:970 chemspider:945 hmdb:HMDB0000223 kegg.compound:C00036 lipidmaps:LMFA01170061;lipidmaps:LMFA01170120
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PEP Metabolite kegg.compound:C00074 "" wikidata:Q412139 chebi:18021;chebi:44897 inchikey:DTBNBXWJWCWCIK-UHFFFAOYSA-N pubchem.compound:59658623;pubchem.compound:58114173;pubchem.compound:1005 chemspider:980 hmdb:HMDB0000263 kegg.compound:C00074
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CIT Metabolite kegg.compound:C00158 "" wikidata:Q159683 chebi:16947;chebi:30769 inchikey:KRKNYBCHXYNGOX-UHFFFAOYSA-N pubchem.compound:19782904;pubchem.compound:311;pubchem.compound:88113319 chemspider:305 hmdb:HMDB0000094 kegg.compound:C00158
16-
Ace-CoA Metabolite kegg.compound:C00024 "" wikidata:Q715317 chebi:15351 inchikey:ZSLZBFCDCINBPY-ZSJPKINUSA-N pubchem.compound:444493 chemspider:392413 hmdb:HMDB0001206 kegg.compound:C00024 lipidmaps:LMFA07050281
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T3P Metabolite kegg.compound:C00197 "" wikidata:Q223118 chebi:17794 inchikey:OSJPPGNTCRNQQC-UWTATZPHSA-N pubchem.compound:439183 chemspider:388326 hmdb:HMDB0060180 kegg.compound:C00197
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Ace Metabolite kegg.compound:C00033 "" wikidata:Q47512 chebi:30089;chebi:15366 inchikey:QTBSBXVTEAMEQO-UHFFFAOYSA-N pubchem.compound:176 chemspider:171 hmdb:HMDB0000042 kegg.compound:C00033 lipidmaps:LMFA01010002
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Glucose Metabolite kegg.compound:C00221 "" wikidata:Q23905968 chebi:15903 inchikey:WQZGKKKJIJFFOK-VFUOTHLCSA-N pubchem.compound:64689 chemspider:58238 hmdb:HMDB0000122 kegg.compound:C00221
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6PG Metabolite kegg.compound:C00345 "" wikidata:Q245501 chebi:48928 inchikey:BIRSGZKFKXLSJQ-SQOUGZDYSA-N pubchem.compound:91493 chemspider:82615 hmdb:HMDB0001316 kegg.compound:C00345
2020
Galactose Metabolite kegg.compound:C00124 "" wikidata:Q27106307 chebi:4139 inchikey:WQZGKKKJIJFFOK-SVZMEOIVSA-N;inchikey:IXRPKRWXUJOOBZ-WDZFZDKYSA-N pubchem.compound:6036 chemspider:5814 hmdb:HMDB0037209 kegg.compound:C00124

‎_data/WP4685-datanodes.tsv‎

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@@ -20,7 +20,7 @@ PDE5A GeneProduct hgnc.symbol:PDE5A "" ensembl:ENSG00000138735 ncbigene:8654 hgn
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KDR GeneProduct ensembl:ENSG00000128052 "" ensembl:ENSG00000128052 ncbigene:3791 hgnc.symbol:KDR uniprot:P35968
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KIT GeneProduct ensembl:ENSG00000157404 "" ensembl:ENSG00000157404 ncbigene:3815 hgnc.symbol:KIT uniprot:A0A8I5KPX7;uniprot:A0A8J8Z860;uniprot:A0A8I5KR87;uniprot:A0A8I5QKL5;uniprot:A0A8I5KXA4;uniprot:A0A8I5QKP7;uniprot:A0A0U2N547;uniprot:A0A8I5KQZ6;uniprot:A0A8I5KS03;uniprot:P10721;uniprot:A0A8I5KRE7
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ERBB4 GeneProduct ensembl:ENSG00000178568 "" ensembl:ENSG00000178568 ncbigene:2066 hgnc.symbol:ERBB4 uniprot:Q15303;uniprot:H3BLT0;uniprot:E9PDR1
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Rho GeneProduct interpro:CD00157 "'The RhoA subfamily (RhoA, RhoB, and RhoC) of GTPases [...] In melanoma the RhoA subfamily, especially RhoC, promotes invasion and metastasis 5, 22, 50, and inhibition of the RhoA isoform suppresses tumor growth' Source: https://doi.org/10.1038/s41388-019-1074-1"
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RhoA GeneProduct interpro:CD00157 "'The RhoA subfamily (RhoA, RhoB, and RhoC) of GTPases [...] In melanoma the RhoA subfamily, especially RhoC, promotes invasion and metastasis 5, 22, 50, and inhibition of the RhoA isoform suppresses tumor growth' Source: https://doi.org/10.1038/s41388-019-1074-1"
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PREX2 GeneProduct ensembl:ENSG00000046889 "" ensembl:ENSG00000046889 ncbigene:80243 hgnc.symbol:PREX2 uniprot:Q70Z35
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STK19 GeneProduct ensembl:ENSG00000204344 "" ensembl:ENSG00000204344 ncbigene:8859 hgnc.symbol:STK19 uniprot:C9J6S8;uniprot:H0YAS4;uniprot:P49842
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MITF GeneProduct ensembl:ENSG00000187098 "" ensembl:ENSG00000187098 ncbigene:4286 hgnc.symbol:MITF uniprot:A0A8I5KRZ6;uniprot:C9JBI8;uniprot:C9K0S7;uniprot:E9PKJ8;uniprot:A0A8I5KSZ4;uniprot:C9J845;uniprot:A0A087WXU1;uniprot:A0A8I5KTU3;uniprot:O75030

‎_data/WP5600-datanodes.tsv‎

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@@ -15,7 +15,7 @@ UBP310 Metabolite chembl.compound:CHEMBL373428 "" wikidata:Q12127712 inchik
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cystine Metabolite chebi:17376 "" wikidata:Q27102343 chebi:35492;chebi:17376 inchikey:LEVWYRKDKASIDU-UHFFFAOYSA-N pubchem.compound:595;pubchem.compound:24798687 chemspider:575 hmdb:HMDB0250712 kegg.compound:C01420
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Ca²⁺ Metabolite chebi:29108 "" wikidata:Q23905776 chebi:29108 inchikey:BHPQYMZQTOCNFJ-UHFFFAOYSA-N pubchem.compound:271 chemspider:266 hmdb:HMDB0000464 kegg.compound:C00076
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NOS Metabolite wikidata:Q417619 ""
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Matabolite Metabolite chebi:14321 "" wikidata:Q27108980 chebi:14321 inchikey:WHUUTDBJXJRKMK-UHFFFAOYSA-M pubchem.compound:4452358;pubchem.compound:4179667;pubchem.compound:4525487 chemspider:3390755
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Metabolite Metabolite chebi:14321 "" wikidata:Q27108980 chebi:14321 inchikey:WHUUTDBJXJRKMK-UHFFFAOYSA-M pubchem.compound:4452358;pubchem.compound:4179667;pubchem.compound:4525487 chemspider:3390755
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PRKCA GeneProduct ensembl:ENSG00000154229 "" ensembl:ENSG00000154229 ncbigene:5578 hgnc.symbol:PRKCA uniprot:J3KN97;uniprot:L7RSM7;uniprot:P17252;uniprot:J3KRN5
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FRMPD3 GeneProduct ensembl:ENSG00000147234 "" ensembl:ENSG00000147234 ncbigene:84443 hgnc.symbol:FRMPD3 uniprot:A0A804HKR2;uniprot:Q5JV73;uniprot:A0A804HKI5;uniprot:A0A804HJA6;uniprot:A0A0A0MSP7
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CAMK2A GeneProduct ensembl:ENSG00000070808 "" ensembl:ENSG00000070808 ncbigene:815 hgnc.symbol:CAMK2A uniprot:A0A5K1VW76;uniprot:D6RFJ0;uniprot:A0A5F9ZHM9;uniprot:A0A5F9ZH21;uniprot:A0A8V8TME7;uniprot:A8K161;uniprot:A0A5F9ZHR5;uniprot:A0A804HLD1;uniprot:Q7LDD5;uniprot:Q9UQM7;uniprot:A0A5F9ZH50;uniprot:A0A804HIC9;uniprot:A0A5F9ZHY2

‎_pathways/WP1397.md‎

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- Ddigles
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- Jmelius
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- Eweitz
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- Egonw
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citedin:
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- link: PMC12302725
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title: Mammary tissue microbiome analysis in PyMT mice reveals Methylobacteria as
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a commensal organism with potential therapeutic applications (2025)
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description: ''
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last-edited: 2021-05-23
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communities: []
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description: Overview of GPCRs, derived from parsed Uniprot data.
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last-edited: 2025-12-06
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ndex: null
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organisms:
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- Mus musculus
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redirect_from:
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- /index.php/Pathway:WP1397
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- /instance/WP1397
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- /instance/WP1397_r117924
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revision: r117924
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- /instance/WP1397_r142142
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revision: r142142
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schema-jsonld:
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- '@context': https://schema.org/
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'@id': https://wikipathways.github.io/pathways/WP1397.html
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'@type': Dataset
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creator:
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'@type': Organization
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name: WikiPathways
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description: ''
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description: Overview of GPCRs, derived from parsed Uniprot data.
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keywords:
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- Brs3
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- Cmklr1

‎_pathways/WP2630.md‎

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---
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annotations:
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- id: PW:0000002
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parent: classic metabolic pathway
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type: Pathway Ontology
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value: classic metabolic pathway
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- id: PW:0000641
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parent: regulatory pathway
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type: Pathway Ontology
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value: gluconeogenesis pathway
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- id: PW:0000002
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parent: classic metabolic pathway
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type: Pathway Ontology
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value: classic metabolic pathway
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authors:
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- LarsEijssen
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- AlexanderPico
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- Plants
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description: Metabolic pathway describing the synthesis of β-D-glucose-6-phosphate
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from malate.
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last-edited: 2025-12-02
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last-edited: 2025-12-06
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ndex: null
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organisms:
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- Solanum lycopersicum
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redirect_from:
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- /index.php/Pathway:WP2630
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- /instance/WP2630
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- /instance/WP2630_r142079
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revision: r142079
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- /instance/WP2630_r142138
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revision: r142138
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- '@context': https://schema.org/
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'@id': https://wikipathways.github.io/pathways/WP2630.html
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- 3.1.3.11
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- 4.1.1.49
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- 4.1.2.13
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- 5.3.1.9
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- 5.4.2.1
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- D-fructose-6-phosphate
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- D-glyceraldehyde-3-phosphate

‎_pathways/WP3583.md‎

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- Anwesha
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- Ariutta
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- Eweitz
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description: ''
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last-edited: 2021-05-21
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- Egonw
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citedin: ''
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communities: []
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description: The pathway was drawn from Figure 1 in the paper.
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last-edited: 2025-12-06
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ndex: null
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organisms:
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- Escherichia coli
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redirect_from:
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- /index.php/Pathway:WP3583
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- /instance/WP3583
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- /instance/WP3583_r117433
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revision: r117433
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- /instance/WP3583_r142141
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revision: r142141
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schema-jsonld:
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- '@context': https://schema.org/
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'@id': https://wikipathways.github.io/pathways/WP3583.html
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'@type': Dataset
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creator:
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'@type': Organization
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name: WikiPathways
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description: ''
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description: The pathway was drawn from Figure 1 in the paper.
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keywords:
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- 2-OG
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- 6PG

‎_pathways/WP4685.md‎

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---
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annotations:
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- id: PW:0000013
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parent: disease pathway
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type: Pathway Ontology
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value: disease pathway
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- id: DOID:1909
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parent: disease of cellular proliferation
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type: Disease Ontology
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value: melanoma
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- id: PW:0000605
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parent: disease pathway
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type: Pathway Ontology
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value: cancer pathway
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- id: PW:0000013
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parent: disease pathway
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type: Pathway Ontology
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value: disease pathway
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- id: CL:0000148
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parent: native cell
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type: Cell Type Ontology
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value: melanocyte
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- id: DOID:1909
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parent: disease of cellular proliferation
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type: Disease Ontology
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value: melanoma
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authors:
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- Khanspers
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- MaintBot
@@ -44,15 +44,15 @@ description: 'Melanoma, or malignant melanoma, is a highly aggressive cancer tha
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inhibiting MDM2, which normally degrades p53, so loss of p14ARF has a similar effect
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to loss of p53. Protein phosphorylation sites were added based on information
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from PhosphoSitePlus (R), www.phosphosite.org. '
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last-edited: 2025-11-26
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last-edited: 2025-12-06
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ndex: 8396f7d7-8b6c-11eb-9e72-0ac135e8bacf
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organisms:
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- Homo sapiens
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redirect_from:
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- /index.php/Pathway:WP4685
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- /instance/WP4685
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- /instance/WP4685_r141870
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revision: r141870
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- /instance/WP4685_r142148
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revision: r142148
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schema-jsonld:
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- '@context': https://schema.org/
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'@id': https://wikipathways.github.io/pathways/WP4685.html
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- RAF1
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- RB1
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- Regorafenib
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- Rho
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- RhoA
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- RhoB
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- RhoC

‎_pathways/WP5600.md‎

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@@ -10,15 +10,15 @@ description: This pathway depicts the epileptogenic mechanisms involving GABA an
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glutamate signaling. It focuses on transporters and channel proteins that modulate
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action potential dynamics and their interacting partners, highlighting functional
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alterations that contribute to epilepsy pathogenesis.
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last-edited: 2025-11-30
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last-edited: 2025-12-06
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ndex: null
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organisms:
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- Homo sapiens
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redirect_from:
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- /index.php/Pathway:WP5600
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- /instance/WP5600
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- /instance/WP5600_r141992
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revision: r141992
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- /instance/WP5600_r142140
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revision: r142140
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- '@context': https://schema.org/
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'@id': https://wikipathways.github.io/pathways/WP5600.html
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- MAPK1
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- MAPK3
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- MBD5
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- Matabolite
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- Metabolite
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- NETO2
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- 'NO'
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- NOS

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