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13-HIST.Rmd
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13-HIST.Rmd
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# Histone Modifications , Chromatin Accessibility {#hist}
## Nucleosome Positioning
<iframe width="560" height="315" src="https://www.youtube.com/embed/fLXnt43j2pU" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Introduction to Histone Modifications
<iframe width="560" height="315" src="https://www.youtube.com/embed/BlyvefYrWIQ" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Infer Transcription Factor Binding from Histone Mark Dynamics
<iframe width="560" height="315" src="https://www.youtube.com/embed/2YsYpbBpgn4" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Using Histone Marks to Infer Gene Functions
<iframe width="560" height="315" src="https://www.youtube.com/embed/OgshOEs58wo" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Introduction to DNase-seq and ATAC-seq
<iframe width="560" height="315" src="https://www.youtube.com/embed/c35spPG5Scw" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Infer TF from Differential Genes Using LISA
<iframe width="560" height="315" src="https://www.youtube.com/embed/BPcthBA3pSo" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Caution on DNase/ATAC-seq footprint analysis
<iframe width="560" height="315" src="https://www.youtube.com/embed/gsb4FbsP48Q?start=382" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Summary of Epigenetics and Chromatin
<iframe width="560" height="315" src="https://www.youtube.com/embed/ujwtXIAWAEE" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Lab 6
### ChIP-seq Expression Integration
<iframe width="560" height="315" src="https://www.youtube.com/embed/zLmZ21DIqLw" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
### Cistrome-GO Tutorial
<iframe width="560" height="315" src="https://www.youtube.com/embed/5jH52bgPJ-4" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
### ATAC-seq Analysis and LISA Tutorial
<iframe width="560" height="315" src="https://www.youtube.com/embed/npiYkTYKFZk" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>