Merge pull request #126 from cindytsai/fix #88
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| # Test if example can run on multiplatform and both in serial (gcc) and parallel (openmpi) | |
| name: amr example | |
| permissions: | |
| contents: read | |
| on: | |
| push: | |
| branches: [ main ] | |
| paths-ignore: | |
| - 'doc/**' | |
| - '**.md' | |
| pull_request: | |
| branches: [ main ] | |
| paths-ignore: | |
| - 'doc/**' | |
| - '**.md' | |
| workflow_dispatch: | |
| jobs: | |
| example-parallel-test-run: | |
| name: parallel | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ['ubuntu-latest'] | |
| mpi_compiler: ['openmpi'] | |
| python_version: ['3.10'] | |
| install_dep_command: ['sudo apt-get install -y libreadline-dev uuid-dev'] | |
| build_pybind11_option: ['-DUSE_PYBIND11=ON', '-DUSE_PYBIND11=OFF'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup MPI ${{ matrix.mpi_compiler }} environment | |
| uses: mpi4py/setup-mpi@v1 | |
| with: | |
| mpi: ${{ matrix.mpi_compiler }} | |
| - name: Setup Python ${{ matrix.python_version }} environment | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python_version }} | |
| cache: 'pip' | |
| - run: | | |
| python -m pip install --upgrade pip | |
| pip install numpy mpi4py yt yt-libyt pandas | |
| - name: Install other dependencies | |
| run: | | |
| ${{ matrix.install_dep_command }} | |
| - name: Set reusable strings | |
| id: strings | |
| shell: bash | |
| run: | | |
| echo "install=${{ github.workspace }}/libyt-install" >> "$GITHUB_OUTPUT" | |
| - name: Build libyt | |
| run: | | |
| cd ${{ github.workspace }} | |
| rm -rf build | |
| cmake -B build -S . -DINTERACTIVE_MODE=ON -DJUPYTER_KERNEL=ON \ | |
| ${{ matrix.build_pybind11_option }} | |
| cmake --build build | |
| cmake --install build --prefix "${{ steps.strings.outputs.install }}" | |
| - name: Prepare Test | |
| run: | | |
| cd ${{ github.workspace }}/example/amr-example | |
| cp ${{ github.workspace }}/.github/tests/test-DataIO/DataIOTest.py . | |
| cd ${{ github.workspace }}/example/amr-example | |
| cp ${{ github.workspace }}/.github/tools/generate_density_data.cpp . | |
| g++ -o generate_density_data generate_density_data.cpp | |
| ./generate_density_data | |
| - name: End-to-End Test - AMR Example (DataIOTest.py) - MPI Size 3 | |
| run: | | |
| cd ${{ github.workspace }}/example/amr-example | |
| make clean | |
| make LIBYT_PATH="${{ steps.strings.outputs.install }}" | |
| OMPI_MCA_osc=sm,pt2pt mpirun -np 3 ./example DataIOTest.py | |
| example-parallel-codecov: | |
| name: parallel | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ['ubuntu-latest'] | |
| mpi_compiler: ['openmpi'] | |
| python_version: ['3.10'] | |
| install_dep_command: ['sudo apt-get install -y libreadline-dev uuid-dev lcov'] | |
| build_pybind11_option: ['-DUSE_PYBIND11=ON', '-DUSE_PYBIND11=OFF'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup MPI ${{ matrix.mpi_compiler }} environment | |
| uses: mpi4py/setup-mpi@v1 | |
| with: | |
| mpi: ${{ matrix.mpi_compiler }} | |
| - name: Setup Python ${{ matrix.python_version }} environment | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python_version }} | |
| cache: 'pip' | |
| - run: | | |
| python -m pip install --upgrade pip | |
| pip install numpy mpi4py yt yt-libyt pandas | |
| - name: Install other dependencies | |
| run: | | |
| ${{ matrix.install_dep_command }} | |
| - name: Configure and Build | |
| run: | | |
| cd ${{ github.workspace }} | |
| rm -rf build | |
| cmake -B build -S . -DINTERACTIVE_MODE=ON -DJUPYTER_KERNEL=ON -DCODE_COVERAGE=ON \ | |
| ${{ matrix.build_pybind11_option }} | |
| cmake --build build | |
| - name: End-to-End Test - AMR Example - MPI Size 3 | |
| working-directory: ${{ github.workspace }}/build/example/amr-example | |
| run: | | |
| OMPI_MCA_osc=sm,pt2pt mpirun -np 3 ./example | |
| - name: Generate code coverage report | |
| working-directory: ${{ github.workspace }}/build/src/CMakeFiles/yt.dir | |
| run: | | |
| lcov --directory . --capture --ignore-errors mismatch --output-file coverage.info | |
| lcov --extract coverage.info "*/libyt/src/*" "*/libyt/include/*" -o coverage-project-only.info | |
| - name: Upload code coverage report to Codecov | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: ${{ github.workspace }}/build/src/CMakeFiles/yt.dir/coverage-project-only.info | |
| verbose: true | |
| example-serial-test-run: | |
| name: serial | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ['ubuntu-latest'] | |
| python_version: ['3.10'] | |
| install_dep_command: ['sudo apt-get install -y libreadline-dev uuid-dev'] | |
| build_pybind11_option: ['-DUSE_PYBIND11=ON', '-DUSE_PYBIND11=OFF'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Python ${{ matrix.python_version }} environment | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python_version }} | |
| cache: 'pip' | |
| - run: | | |
| python -m pip install --upgrade pip | |
| pip install numpy yt yt-libyt pandas | |
| - name: Install other dependencies | |
| run: | | |
| ${{ matrix.install_dep_command }} | |
| - name: Set reusable strings | |
| id: strings | |
| shell: bash | |
| run: | | |
| echo "install=${{ github.workspace }}/libyt-install" >> "$GITHUB_OUTPUT" | |
| - name: Build libyt | |
| run: | | |
| cd ${{ github.workspace }} | |
| rm -rf build | |
| cmake -B build -S . -DINTERACTIVE_MODE=ON -DJUPYTER_KERNEL=ON -DSERIAL_MODE=ON \ | |
| ${{ matrix.build_pybind11_option }} | |
| cmake --build build | |
| cmake --install build --prefix "${{ steps.strings.outputs.install }}" | |
| - name: Prepare Test | |
| run: | | |
| cd ${{ github.workspace }}/example/amr-example | |
| cp ${{ github.workspace }}/.github/tests/test-DataIO/DataIOTest.py . | |
| cd ${{ github.workspace }}/example/amr-example | |
| cp ${{ github.workspace }}/.github/tools/generate_density_data.cpp . | |
| g++ -o generate_density_data generate_density_data.cpp | |
| ./generate_density_data | |
| - name: End-to-End Test - AMR Example (DataIOTest.py) - Serial | |
| run: | | |
| cd ${{ github.workspace }}/example/amr-example | |
| make clean | |
| make OPTIONS=-DSERIAL_MODE LIBYT_PATH="${{ steps.strings.outputs.install }}" | |
| ./example DataIOTest.py | |
| example-serial-codecov: | |
| name: serial | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ['ubuntu-latest'] | |
| python_version: ['3.10'] | |
| install_dep_command: ['sudo apt-get install -y libreadline-dev uuid-dev lcov'] | |
| build_pybind11_option: ['-DUSE_PYBIND11=ON', '-DUSE_PYBIND11=OFF'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Python ${{ matrix.python_version }} environment | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python_version }} | |
| cache: 'pip' | |
| - run: | | |
| python -m pip install --upgrade pip | |
| pip install numpy yt yt-libyt pandas | |
| - name: Install other dependencies | |
| run: | | |
| ${{ matrix.install_dep_command }} | |
| - name: Configure and Build | |
| run: | | |
| cd ${{ github.workspace }} | |
| rm -rf build | |
| cmake -B build -S . -DINTERACTIVE_MODE=ON -DJUPYTER_KERNEL=ON -DSERIAL_MODE=ON -DCODE_COVERAGE=ON \ | |
| ${{ matrix.build_pybind11_option }} | |
| cmake --build build | |
| - name: End-to-End Test - AMR Example - Serial | |
| working-directory: ${{ github.workspace }}/build/example/amr-example | |
| run: | | |
| ./example | |
| - name: Generate code coverage report | |
| working-directory: ${{ github.workspace }}/build/src/CMakeFiles/yt.dir | |
| run: | | |
| lcov --directory . --capture --ignore-errors mismatch --output-file coverage.info | |
| lcov --extract coverage.info "*/libyt/src/*" "*/libyt/include/*" -o coverage-project-only.info | |
| - name: Upload code coverage report to Codecov | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: ${{ github.workspace }}/build/src/CMakeFiles/yt.dir/coverage-project-only.info | |
| verbose: true |