-
Notifications
You must be signed in to change notification settings - Fork 8
/
Copy pathreactions.yaml
3841 lines (3841 loc) · 114 KB
/
reactions.yaml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
- id: r0001
name: 'glycerol kinase '
genes: SCO1660
equation: ATP[c] + GL[c] => ADP[c] + GL3P[c]
- id: r0002
name: 'glycerol kinase '
genes: SCO0509
equation: ATP[c] + GL[c] => ADP[c] + GL3P[c]
- id: r0003
name: 'glycerol kinase '
genes: SCO7004
equation: ATP[c] + GL[c] => ADP[c] + GL3P[c]
- id: r0004
name: 'glycerol-3-phosphate dehydrogenase '
genes: SCO1661
equation: GL3P[c] + MK[c] => DHAP[c] + MKH2[c]
- id: r0005
name: 'glycerol-3-phosphate dehydrogenase '
genes: SCO7005 and SCO7006
equation: GL3P[c] + MK[c] => DHAP[c] + MKH2[c]
- id: r0006
name: 'glycerol-3-phosphate dehydrogenase '
genes: SCO0670
equation: GL3P[c] + MK[c] => DHAP[c] + MKH2[c]
- id: r0007
name: 'glycerol-3-phosphate dehydrogenase '
genes: SCO4774
equation: GL3P[c] + MK[c] => DHAP[c] + MKH2[c]
- id: r0008
name: 'glyceraldehyde dehydrogenase '
genes: SCO1174
equation: NAD[c] + T3[c] => DGLYCERATE[c] + NADH[c]
- id: r0009
name: 'glyceraldehyde dehydrogenase '
genes: SCO1706
equation: NAD[c] + T3[c] => DGLYCERATE[c] + NADH[c]
- id: r0010
name: 'glyceraldehyde dehydrogenase '
genes: SCO3420
equation: NAD[c] + T3[c] => DGLYCERATE[c] + NADH[c]
- id: r0011
name: 'glyceraldehyde dehydrogenase '
genes: SCO4913
equation: NAD[c] + T3[c] => DGLYCERATE[c] + NADH[c]
- id: r0012
name: glycerate kinase
genes: SCO2145
equation: ATP[c] + DGLYCERATE[c] => 3PG[c] + ADP[c]
- id: r0013
name: glycerate kinase
genes: SCO6466
equation: ATP[c] + DGLYCERATE[c] => 3PG[c] + ADP[c]
- id: r0014
name: ribokinase
genes: SCO2748
equation: ATP[c] + RIB[c] => ADP[c] + R5P[c]
- id: r0015
name: aldehyde reductase
equation: ARABITOL[c] + NAD[c] <=> LARABINOSE[c] + NADH[c]
- id: r0016
name: L-arabinitol 4-dehydrogenase
equation: ARABITOL[c] + NAD[c] <=> LXYLULOSE[c] + NADH[c]
- id: r0017
name: L-arabinose isomerase
equation: LARABINOSE[c] <=> LRIBULOSE[c]
- id: r0018
name: L-arabinitol 2-dehydrogenase
equation: ARABITOL[c] + NAD[c] <=> LRIBULOSE[c] + NADH[c]
- id: r0019
name: ribulokinase
equation: ATP[c] + LRIBULOSE[c] => ADP[c] + LRIBULOSE5P[c]
- id: r0020
name: L-xylulokinase
equation: ATP[c] + LXYLULOSE[c] => ADP[c] + LXYLULOSE5P[c]
- id: r0021
name: rhamnulokinase
genes: SCO0814
equation: ATP[c] + LXYLULOSE[c] => ADP[c] + LXYLULOSE1P[c]
- id: r0022
name: isomerase
equation: LXYLULOSE5P[c] <=> LRIBULOSE5P[c]
- id: r0023
name: L-ribulose-phosphate 4-epimerase
equation: LRIBULOSE5P[c] <=> X5P[c]
- id: r0024
name: D-iditol 2-dehydrogenase
equation: NAD[c] + XYLITOL[c] <=> LXYLULOSE[c] + NADH[c]
- id: r0025
name: aldehyde reductase
equation: NADH[c] + XYL[c] <=> NAD[c] + XYLITOL[c]
- id: r0026
name: D-xylulose reductase
equation: NAD[c] + XYLITOL[c] => DXYLULOSE[c] + NADH[c]
- id: r0027
name: xylose isomerase
genes: SCO1169
equation: XYL[c] <=> DXYLULOSE[c]
- id: r0028
name: D-arabinitol 4-dehydrogenase
equation: DARABITOL[c] + NAD[c] => DXYLULOSE[c] + NADH[c]
- id: r0029
name: D-lyxose ketol-isomerase
equation: DLYXOSE[c] <=> DXYLULOSE[c]
- id: r0030
name: xylulokinase
genes: SCO1170
equation: ATP[c] + DXYLULOSE[c] => ADP[c] + X5P[c]
- id: r0031
name: sugar isomerase
genes: SCO0812
equation: LLYXOSE[c] <=> LXYLULOSE[c]
- id: r0032
name: 1-phosphofructokinase
genes: SCO3197
equation: ATP[c] + F1P[c] => ADP[c] + FDP[c]
- id: r0033
name: fructose-bisphosphate aldolase
genes: SCO3649
equation: F1P[c] => DHAP[c] + T3[c]
- id: r0034
name: fructokinase
genes: SCO1957
equation: ATP[c] + FRU[c] => ADP[c] + F6P[c]
- id: r0035
name: xylose isomerase
genes: SCO1169
equation: FRU[c] <=> GLC[c]
- id: r0036
name: mannose-6-phosphate isomerase
genes: SCO3025
equation: MAN6P[c] <=> F6P[c]
- id: r0037
name: phosphomannomutase
genes: SCO3028
equation: MAN6P[c] <=> MAN1P[c]
- id: r0038
name: phosphomannomutase
genes: SCO4736
equation: MAN6P[c] <=> MAN1P[c]
- id: r0039
name: phosphomannomutase
genes: SCO4916
equation: MAN6P[c] <=> MAN1P[c]
- id: r0040
name: phosphomannomutase
genes: SCO1388
equation: MAN6P[c] <=> MAN1P[c]
- id: r0041
name: mannose-1-phosphate guanylyltransferase
genes: SCO1388
equation: GTP[c] + MAN1P[c] => GDPMAN[c] + PPI[c]
- id: r0042
name: mannose-1-phosphate guanylyltransferase
genes: SCO3039
equation: GTP[c] + MAN1P[c] => GDPMAN[c] + PPI[c]
- id: r0043
name: galactokinase
genes: SCO3136
equation: ATP[c] + GLAC[c] => ADP[c] + GAL1P[c]
- id: r0044
name: UDP-glucose 4-epimerase
genes: SCO3137
equation: UDPG[c] <=> UDPGAL[c]
- id: r0045
name: UTP-hexose-1-phosphate uridylyltransferase
genes: SCO3138
equation: GAL1P[c] + UTP[c] <=> PPI[c] + UDPGAL[c]
- id: r0046
name: UDP-glucose 4-epimerase
genes: SCO2988
equation: UDPG[c] <=> UDPGAL[c]
- id: r0047
name: UDP-glucose 4-epimerase
genes: SCO3326
equation: UDPG[c] <=> UDPGAL[c]
- id: r0048
name: UTP-glucose-1-phosphate uridylyltransferase
genes: SCO3182
equation: G1P[c] + UTP[c] <=> PPI[c] + UDPG[c]
- id: r0049
name: alpha-galactosidase
genes: SCO0541
equation: RAF[c] => GLAC[c] + SUC[c]
- id: r0050
name: alpha-galactosidase
genes: SCO0541
equation: STACHYOSE[c] => GLAC[c] + RAF[c]
- id: r0051
name: alpha-galactosidase
genes: SCO0541
equation: EPM[c] <=> GLAC[c] + MAN[c]
- id: r0052
name: alpha-galactosidase
genes: SCO0541
equation: GGL[c] <=> GL[c] + GLAC[c]
- id: r0053
name: alpha-galactosidase
genes: SCO0541
equation: MELT[c] <=> GLAC[c] + SOT[c]
- id: r0054
name: alpha-galactosidase
genes: SCO0541
equation: GALACTINOL[c] => GLAC[c] + MI[c]
- id: r0055
name: gluconokinase
genes: SCO1679
equation: ATP[c] + GLUC[c] => ADP[c] + D6PGC[c]
- id: r0056
name: mannitol-1-phosphate 5-dehydrogenase
equation: MNT1P[c] + NAD[c] => F6P[c] + NADH[c]
- id: r0057
name: L-rhamnose isomerase
equation: RMN[c] <=> RHAMN[c]
- id: r0058
name: rhamnulokinase
genes: SCO0814
equation: ATP[c] + RHAMN[c] => ADP[c] + RHAMN1P[c]
- id: r0059
name: rhamnulose-1-phosphate aldolase
equation: RHAMN[c] => DHAP[c] + LACTAL[c]
- id: r0060
name: lactaldehyde dehydrogenase
genes: SCO3486
equation: LACTAL[c] + NAD[c] => LLAC[c] + NADH[c]
- id: r0061
name: 6-phospho-beta-glucosidase
genes: SCO2661
equation: SAL6P[c] => bDG6P[c] + HMP[c]
- id: r0062
name: 6-phospho-beta-glucosidase
genes: SCO6670
equation: SAL6P[c] => bDG6P[c] + HMP[c]
- id: r0063
name: 'alpha-glucosidase '
genes: SCO1394
equation: MLT[c] => (2) GLC[c]
- id: r0064
name: 'alpha-glucosidase '
genes: SCO2228
equation: MLT[c] => (2) GLC[c]
- id: r0065
name: 'alpha-glucosidase '
genes: SCO3780
equation: MLT[c] => (2) GLC[c]
- id: r0066
name: 'alpha-glucosidase '
genes: SCO7010
equation: MLT[c] => (2) GLC[c]
- id: r0067
name: 'alpha-glucosidase '
genes: SCO1394
equation: SUC[c] => FRU[c] + GLC[c]
- id: r0068
name: 'alpha-glucosidase '
genes: SCO2228
equation: SUC[c] => FRU[c] + GLC[c]
- id: r0069
name: 'alpha-glucosidase '
genes: SCO3780
equation: SUC[c] => FRU[c] + GLC[c]
- id: r0070
name: 'alpha-glucosidase '
genes: SCO7010
equation: SUC[c] => FRU[c] + GLC[c]
- id: r0071
name: beta-galatosidase
genes: SCO3479
equation: LACTOSE[c] => GLAC[c] + GLC[c]
- id: r0072
name: beta-galatosidase
genes: SCO5689
equation: LACTOSE[c] => GLAC[c] + GLC[c]
- id: r0073
name: beta-galatosidase
genes: SCO6347
equation: LACTOSE[c] => GLAC[c] + GLC[c]
- id: r0074
name: beta-galatosidase
genes: SCO6457
equation: LACTOSE[c] => GLAC[c] + GLC[c]
- id: r0075
name: beta-galatosidase
genes: SCO7407
equation: LACTOSE[c] => GLAC[c] + GLC[c]
- id: r0076
name: 'beta-glucosidase '
genes: SCO0293
equation: CELB[c] => (2) bDGLC[c]
- id: r0077
name: 'beta-glucosidase '
genes: SCO0458
equation: CELB[c] => (2) bDGLC[c]
- id: r0078
name: 'beta-glucosidase '
genes: SCO1059
equation: CELB[c] => (2) bDGLC[c]
- id: r0079
name: 'beta-glucosidase '
genes: SCO2531
equation: CELB[c] => (2) bDGLC[c]
- id: r0080
name: 'beta-glucosidase '
genes: SCO2798
equation: CELB[c] => (2) bDGLC[c]
- id: r0081
name: 'beta-glucosidase '
genes: SCO5685
equation: CELB[c] => (2) bDGLC[c]
- id: r0082
name: 'beta-glucosidase '
genes: SCO7031
equation: CELB[c] => (2) bDGLC[c]
- id: r0083
name: 'beta-glucosidase '
genes: SCO7558
equation: CELB[c] => (2) bDGLC[c]
- id: r0084
name: alpha-galactosidase
genes: SCO0541
equation: MELI[c] => GLAC[c] + GLC[c]
- id: r0085
name: trehalose-phosphatase
genes: SCO4288
equation: TRE6P[c] => PI[c] + TRE[c]
- id: r0086
name: alpha,alpha-trehalase
equation: TRE[c] => (2) GLC[c]
- id: r0087
name: L(+)-tartrate dehydratase
equation: TARTRATE[c] => OA[c]
- id: r0088
name: formate dehydrogenase
genes: SCO6561
equation: FOR[c] + NAD[c] => CO2[c] + NADH[c]
- id: r0089
name: glutamate decarboxylase
genes: SCO3416
equation: GLU[c] => CO2[c] + GABA[c]
- id: r0090
name: 4-aminobutyrate transaminase
genes: SCO5676
equation: AKG[c] + GABA[c] => GLU[c] + SUCCSAL[c]
- id: r0091
name: succinate-semialdehyde dehydrogenase
genes: SCO1204
equation: NADP[c] + SUCCSAL[c] => NADPH[c] + SUCC[c]
- id: r0092
name: succinate-semialdehyde dehydrogenase
genes: SCO4780
equation: NADP[c] + SUCCSAL[c] => NADPH[c] + SUCC[c]
- id: r0093
name: glutaminase
genes: SCO7049
equation: GLN[c] => GLU[c] + NH3[c]
- id: r0094
name: 1-pyrroline-5-carboxylate dehydrogenase
genes: SCO5520
equation: NAD[c] + P5C[c] => GLU[c] + NADH[c]
- id: r0095
name: 1-pyrroline-5-carboxylate dehydrogenase
genes: SCO5520
equation: GLUGSAL[c] + NAD[c] => GLU[c] + NADH[c]
- id: r0096
name: arginine deiminase
genes: SCO0613
equation: ARG[c] => CITR[c] + NH3[c]
- id: r0097
name: arginine deiminase
genes: SCO5975
equation: ARG[c] => CITR[c] + NH3[c]
- id: r0098
name: ornithine-oxo-acid transaminase
genes: SCO1223
equation: AKG[c] + ORN[c] => GLU[c] + GLUGSAL[c]
- id: r0099
name: ornithine-oxo-acid transaminase
genes: SCO1284
equation: AKG[c] + ORN[c] => GLU[c] + GLUGSAL[c]
- id: r0100
name: ornithine carbamoyltransferase
genes: SCO5976
equation: CAP[c] + ORN[c] <=> CITR[c] + PI[c]
- id: r0101
name: ornithine decarboxylase
genes: SCO6035
equation: ORN[c] => CO2[c] + PTRSC[c]
- id: r0102
name: spermidine synthase
genes: SCO2455
equation: PTRSC[c] + SAM[c] => 5MTA[c] + SPRMD[c]
- id: r0103
name: urease
genes: SCO1234 and SCO1235 and SCO1236 and SCO1231 and SCO1232 and SCO1233
equation: UREA[c] => CO2[c] + (2) NH3[c]
- id: r0104
name: urease
genes: SCO5526 and SCO5525 and SCO1231 and SCO1232 and SCO1233
equation: UREA[c] => CO2[c] + (2) NH3[c]
- id: r0105
name: valine dehydrogenase
genes: SCO4089
equation: ILE[c] + NAD[c] => NADH[c] + NH3[c] + OXOMETHYLPENTANOATE[c]
- id: r0106
name: 3-methyl-2-oxobutanoate dehydrogenase
genes: SCO3817 and SCO3816
equation: LIPO[c] + OXOMETHYLPENTANOATE[c] => 2MBUTLIPO[c] + CO2[c]
- id: r0107
name: 3-methyl-2-oxobutanoate dehydrogenase
genes: SCO3831 and SCO3830
equation: LIPO[c] + OXOMETHYLPENTANOATE[c] => 2MBUTLIPO[c] + CO2[c]
- id: r0108
name: dihydrolipoyllysine-residue acetyltransferase
genes: SCO3815 and SCO3829
equation: 2MBUTLIPO[c] + COA[c] => 2MBUTCOA[c] + DLIPO[c]
- id: r0109
name: acyl-CoA dehydrogenase
genes: SCO1690
equation: 2MBUTCOA[c] + MK[c] => 2MBECOA[c] + MKH2[c]
- id: r0110
name: acyl-CoA dehydrogenase
genes: SCO2774
equation: 2MBUTCOA[c] + MK[c] => 2MBECOA[c] + MKH2[c]
- id: r0111
name: acyl-CoA dehydrogenase
genes: SCO6787
equation: 2MBUTCOA[c] + MK[c] => 2MBECOA[c] + MKH2[c]
- id: r0112
name: enoyl-CoA hydratase
genes: SCO0364
equation: 2MBECOA[c] => HMBUTCOA[c]
- id: r0113
name: enoyl-CoA hydratase
genes: SCO4930
equation: 2MBECOA[c] => HMBUTCOA[c]
- id: r0114
name: enoyl-CoA hydratase
genes: SCO5144
equation: 2MBECOA[c] => HMBUTCOA[c]
- id: r0115
name: enoyl-CoA hydratase
genes: SCO6732
equation: 2MBECOA[c] => HMBUTCOA[c]
- id: r0116
name: enoyl-CoA hydratase
genes: SCO6789
equation: 2MBECOA[c] => HMBUTCOA[c]
- id: r0117
name: 3-hydroxyacyl-CoA dehydrogenase
genes: SCO6789
equation: HMBUTCOA[c] + NAD[c] => MAACCOA[c] + NADH[c]
- id: r0118
name: 3-hydroxyacyl-CoA dehydrogenase
genes: SCO0984
equation: HMBUTCOA[c] + NAD[c] => MAACCOA[c] + NADH[c]
- id: r0119
name: 3-hydroxyacyl-CoA dehydrogenase
genes: SCO1591
equation: HMBUTCOA[c] + NAD[c] => MAACCOA[c] + NADH[c]
- id: r0120
name: 3-hydroxyacyl-CoA dehydrogenase
genes: SCO6297
equation: HMBUTCOA[c] + NAD[c] => MAACCOA[c] + NADH[c]
- id: r0121
name: 'acetyl-CoA acetyltransferase '
genes: SCO1324
equation: COA[c] + MAACCOA[c] => ACCOA[c] + PROPIONYLCOA[c]
- id: r0122
name: 'acetyl-CoA acetyltransferase '
genes: SCO3079
equation: COA[c] + MAACCOA[c] => ACCOA[c] + PROPIONYLCOA[c]
- id: r0123
name: 'acetyl-CoA acetyltransferase '
genes: SCO4502
equation: COA[c] + MAACCOA[c] => ACCOA[c] + PROPIONYLCOA[c]
- id: r0124
name: 'acetyl-CoA acetyltransferase '
genes: SCO6701
equation: COA[c] + MAACCOA[c] => ACCOA[c] + PROPIONYLCOA[c]
- id: r0125
name: 'acetyl-CoA acetyltransferase '
genes: SCO6731
equation: COA[c] + MAACCOA[c] => ACCOA[c] + PROPIONYLCOA[c]
- id: r0126
name: 'acetyl-CoA acetyltransferase '
genes: SCO6788
equation: COA[c] + MAACCOA[c] => ACCOA[c] + PROPIONYLCOA[c]
- id: r0127
name: 'acetyl-CoA acetyltransferase '
genes: SCO6967
equation: COA[c] + MAACCOA[c] => ACCOA[c] + PROPIONYLCOA[c]
- id: r0128
name: propionyl-CoA carboxylase
genes: SCO4381 and SCO4380
equation: ATP[c] + CO2[c] + PROPIONYLCOA[c] => ADP[c] + PI[c] + SMMALONYLCOA[c]
- id: r0129
name: propionyl-CoA carboxylase
genes: SCO2777 and SCO2776
equation: ATP[c] + CO2[c] + PROPIONYLCOA[c] => ADP[c] + PI[c] + SMMALONYLCOA[c]
- id: r0130
name: propionyl-CoA carboxylase
genes: SCO4921 and SCO4926
equation: ATP[c] + CO2[c] + PROPIONYLCOA[c] => ADP[c] + PI[c] + SMMALONYLCOA[c]
- id: r0131
name: methylmalonyl-CoA epimerase
equation: RMMALONYLCOA[c] <=> SMMALONYLCOA[c]
- id: r0132
name: methylmalonyl-CoA mutase
genes: SCO6833
equation: RMMALONYLCOA[c] <=> SUCCOA[c]
- id: r0133
name: methylmalonyl-CoA mutase
genes: SCO4800
equation: RMMALONYLCOA[c] <=> SUCCOA[c]
- id: r0134
name: methylmalonyl-CoA mutase
genes: SCO6472
equation: RMMALONYLCOA[c] <=> SUCCOA[c]
- id: r0135
name: methylmalonyl-CoA mutase
genes: SCO4869
equation: RMMALONYLCOA[c] <=> SUCCOA[c]
- id: r0136
name: methylmalonyl-CoA mutase
genes: SCO5415
equation: RMMALONYLCOA[c] <=> SUCCOA[c]
- id: r0137
name: methylmalonyl-CoA mutase
genes: SCO6832
equation: RMMALONYLCOA[c] <=> SUCCOA[c]
- id: r0138
name: valine dehydrogenase
genes: SCO4089
equation: LEU[c] + NAD[c] => MOP[c] + NADH[c] + NH3[c]
- id: r0139
name: 3-methyl-2-oxobutanoate dehydrogenase
genes: SCO3817 and SCO3816
equation: LIPO[c] + MOP[c] => 3MBUTLIPO[c] + CO2[c]
- id: r0140
name: 3-methyl-2-oxobutanoate dehydrogenase
genes: SCO3831 and SCO3830
equation: LIPO[c] + MOP[c] => 3MBUTLIPO[c] + CO2[c]
- id: r0141
name: dihydrolipoyllysine-residue acetyltransferase
genes: SCO3815 and SCO3829
equation: 3MBUTLIPO[c] + COA[c] => 3MBUTCOA[c] + DLIPO[c]
- id: r0142
name: acyl-CoA dehydrogenase
genes: SCO1690
equation: 3MBUTCOA[c] + MK[c] => 3MBECOA[c] + MKH2[c]
- id: r0143
name: acyl-CoA dehydrogenase
genes: SCO2774
equation: 3MBUTCOA[c] + MK[c] => 3MBECOA[c] + MKH2[c]
- id: r0144
name: acyl-CoA dehydrogenase
genes: SCO2779
equation: 3MBUTCOA[c] + MK[c] => 3MBECOA[c] + MKH2[c]
- id: r0145
name: acyl-CoA dehydrogenase
genes: SCO6787
equation: 3MBUTCOA[c] + MK[c] => 3MBECOA[c] + MKH2[c]
- id: r0146
name: methylcrotonoyl-CoA carboxylase
genes: SCO2777 and SCO2776
equation: 3MBECOA[c] + ATP[c] + CO2[c] => ADP[c] + MGLUTCOA[c] + PI[c]
- id: r0147
name: methylglutaconyl-CoA hydratase
equation: MGLUTCOA[c] => HMGLUTCOA[c]
- id: r0148
name: hydroxymethylglutaryl-CoA lyase
genes: SCO2778
equation: HMGLUTCOA[c] => ACCOA[c] + ACTAC[c]
- id: r0149
name: acetoacetate-CoA ligase
genes: SCO1393
equation: ACTAC[c] + ATP[c] + COA[c] => AACCOA[c] + AMP[c] + PPI[c]
- id: r0150
name: 3-oxoacid CoA-transferase
genes: SCO6703 and SCO6702
equation: ACTAC[c] + SUCCOA[c] <=> AACCOA[c] + SUCC[c]
- id: r0151
name: valine dehydrogenase
genes: SCO4089
equation: NAD[c] + VAL[c] => NADH[c] + NH3[c] + OMVAL[c]
- id: r0152
name: 3-methyl-2-oxobutanoate dehydrogenase
genes: SCO3817 and SCO3816
equation: LIPO[c] + OMVAL[c] => CO2[c] + IBUTLIPO[c]
- id: r0153
name: 3-methyl-2-oxobutanoate dehydrogenase
genes: SCO3831 and SCO3830
equation: LIPO[c] + OMVAL[c] => CO2[c] + IBUTLIPO[c]
- id: r0154
name: dihydrolipoyllysine-residue acetyltransferase
genes: SCO3815 and SCO3829
equation: COA[c] + IBUTLIPO[c] => DLIPO[c] + IBUTCOA[c]
- id: r0155
name: acyl-CoA dehydrogenase
genes: SCO1690
equation: IBUTCOA[c] + MK[c] => MACRCOA[c] + MKH2[c]
- id: r0156
name: acyl-CoA dehydrogenase
genes: SCO2774
equation: IBUTCOA[c] + MK[c] => MACRCOA[c] + MKH2[c]
- id: r0157
name: acyl-CoA dehydrogenase
genes: SCO2779
equation: IBUTCOA[c] + MK[c] => MACRCOA[c] + MKH2[c]
- id: r0158
name: acyl-CoA dehydrogenase
genes: SCO6787
equation: IBUTCOA[c] + MK[c] => MACRCOA[c] + MKH2[c]
- id: r0159
name: enoyl-CoA hydratase
genes: SCO0364
equation: MACRCOA[c] => HIBUTCOA[c]
- id: r0160
name: enoyl-CoA hydratase
genes: SCO4930
equation: MACRCOA[c] => HIBUTCOA[c]
- id: r0161
name: enoyl-CoA hydratase
genes: SCO5144
equation: MACRCOA[c] => HIBUTCOA[c]
- id: r0162
name: enoyl-CoA hydratase
genes: SCO6732
equation: MACRCOA[c] => HIBUTCOA[c]
- id: r0163
name: enoyl-CoA hydratase
genes: SCO6789
equation: MACRCOA[c] => HIBUTCOA[c]
- id: r0164
name: 3-hydroxyisobutyryl-CoA hydrolase
equation: HIBUTCOA[c] => COA[c] + HIBUT[c]
- id: r0165
name: 3-hydroxyacyl-CoA dehydrogenase
genes: SCO0984
equation: HIBUT[c] + NAD[c] => METHYLMALONATES[c] + NADH[c]
- id: r0166
name: 3-hydroxyacyl-CoA dehydrogenase
genes: SCO1591
equation: HIBUT[c] + NAD[c] => METHYLMALONATES[c] + NADH[c]
- id: r0167
name: 3-hydroxyacyl-CoA dehydrogenase
genes: SCO6297
equation: HIBUT[c] + NAD[c] => METHYLMALONATES[c] + NADH[c]
- id: r0168
name: 3-hydroxyisobutyrate dehydrogenase
genes: SCO0907
equation: HIBUT[c] + NAD[c] => METHYLMALONATES[c] + NADH[c]
- id: r0169
name: unclear reaction
equation: COA[c] + METHYLMALONATE[c] => RMMALONYLCOA[c]
- id: r0170
name: methylmalonate-semialdehyde dehydrogenase (acylating)
genes: SCO2726
equation: COA[c] + METHYLMALONATES[c] + NAD[c] => CO2[c] + NADH[c] + PROPIONYLCOA[c]
- id: r0171
name: spontaneous iminosuccinate deamination
equation: ISUCC[c] => NH3[c] + OA[c]
- id: r0172
name: glutamate decarboxylase
genes: SCO3416
equation: ASP[c] => bALA[c] + CO2[c]
- id: r0173
name: 4-aminobutyrate transaminase
genes: SCO5676
equation: AKG[c] + bALA[c] <=> GLU[c] + MALONATES[c]
- id: r0174
name: malonate-semialdehyde dehydrogenase (acetylating)
equation: COA[c] + MALONATES[c] + NAD[c] => ACCOA[c] + CO2[c] + NADH[c]
- id: r0175
name: asparaginase
equation: ASN[c] => ASP[c] + NH3[c]
- id: r0176
name: threonine aldolase
genes: SCO1087
equation: THR[c] => ACAL[c] + GLY[c]
- id: r0177
name: L-threonine 3-dehydrogenase
genes: SCO6799
equation: NAD[c] + THR[c] => 2A3KB[c] + NADH[c]
- id: r0178
name: spontaneous decarboxylation
equation: 2A3KB[c] => AMINOACETONE[c] + CO2[c]
- id: r0179
name: glycine C-acetyltransferase
genes: SCO6800
equation: 2A3KB[c] + COA[c] <=> ACCOA[c] + GLY[c]
- id: r0180
name: lysine decarboxylase
genes: SCO7311
equation: LYS[c] => CADA[c] + CO2[c]
- id: r0181
name: cadaverine aminotransferase
equation: AKG[c] + CADA[c] => GLU[c] + PIPER[c]
- id: r0182
name: piperideine dehydrogenase
equation: NAD[c] + PIPER[c] => AMINOVAL[c] + NADH[c]
- id: r0183
name: 5-aminovalerate transaminase
equation: AKG[c] + AMINOVAL[c] => GLU[c] + GLUTSEMI[c]
- id: r0184
name: glutarate-semialdehyde dehydrogenase
equation: GLUTSEMI[c] + NAD[c] => GLUT[c] + NADH[c]
- id: r0185
name: glutarate-CoA ligase
equation: ATP[c] + COA[c] + GLUT[c] => ADP[c] + GLUTCOA[c] + PI[c]
- id: r0186
name: glutaryl-CoA dehydrogenase
equation: GLUTCOA[c] + (2) NAD[c] => AACCOA[c] + (2) NADH[c]
- id: r0187
name: spontaneous
equation: O2[c] + OBUT[c] + PI[c] => CO2[c] + PROPIONYLP[c]
- id: r0188
name: aminomethyltransferase
genes: SCO5472
equation: SAP[c] + THF[c] => DHLIPOYLPROTEIN[c] + METTHF[c] + NH3[c]
- id: r0189
name: glycine hydroxymethyltransferase
genes: SCO5470
equation: SER[c] + THF[c] <=> GLY[c] + METTHF[c]
- id: r0190
name: glycine dehydrogenase
genes: SCO1378
equation: GLY[c] + LIPOYLPROTEIN[c] => CO2[c] + SAP[c]
- id: r0191
name: dihydrolipoyl dehydrogenase
genes: SCO0884
equation: DHLIPOYLPROTEIN[c] + NAD[c] => LIPOYLPROTEIN[c] + NADH[c]
- id: r0192
name: dihydrolipoyl dehydrogenase
genes: SCO2180
equation: DHLIPOYLPROTEIN[c] + NAD[c] => LIPOYLPROTEIN[c] + NADH[c]
- id: r0193
name: dihydrolipoyl dehydrogenase
genes: SCO4919
equation: DHLIPOYLPROTEIN[c] + NAD[c] => LIPOYLPROTEIN[c] + NADH[c]
- id: r0194
name: L-serine ammonia-lyase
genes: SCO5469
equation: SER[c] => NH3[c] + PYR[c]
- id: r0195
name: L-serine ammonia-lyase
genes: SCO4962
equation: SER[c] => NH3[c] + PYR[c]
- id: r0196
name: cystathionine gamma-lyase
genes: SCO3920
equation: CYS[c] => H2S[c] + NH3[c] + PYR[c]
- id: r0197
name: histidine ammonia-lyase
genes: SCO4932
equation: HIS[c] => NH3[c] + UROCANATE[c]
- id: r0198
name: urocanate hydratase
genes: SCO3073
equation: UROCANATE[c] => ODHIMP[c]
- id: r0199
name: polyketide hydroxylase
genes: SCO5321
equation: NADH[c] + O2[c] + ODHIMP[c] => HYDANTPR[c] + NAD[c]
- id: r0200
name: hydantoin-5-propionate hydrolase
genes: SCO3071
equation: HYDANTPR[c] => CAGLU[c]
- id: r0201
name: 'N-carbamoyl-L-amino-acid hydrolase '
genes: SCO3072
equation: CAGLU[c] => CO2[c] + GLU[c] + NH3[c]
- id: r0202
name: imidazolonepropionase
genes: SCO3070
equation: ODHIMP[c] => FORGLU[c]
- id: r0203
name: formimidoylglutamase
equation: FORGLU[c] => FORMAMIDE[c] + GLU[c]
- id: r0204
name: tryptophan 2,3-dioxygenase
equation: O2[c] + TRP[c] => FKYN[c]
- id: r0205
name: N-Formylkynurenine amidohydrolase
equation: FKYN[c] => FOR[c] + KYN[c]
- id: r0206
name: L-Kynurenine hydrolase
equation: KYN[c] => ALA[c] + AN[c]
- id: r0207
name: Formylkynurenine hydrolase
equation: FKYN[c] => ALA[c] + FAN[c]
- id: r0208
name: N-Formylanthranilate amidohydrolase
equation: FAN[c] => AN[c] + FOR[c]
- id: r0209
name: aspartate transaminase
genes: SCO4645
equation: AKG[c] + TYR[c] <=> 4HPP[c] + GLU[c]
- id: r0210
name: aspartate transaminase
genes: SCO4984
equation: AKG[c] + TYR[c] <=> 4HPP[c] + GLU[c]
- id: r0211
name: aspartate transaminase
genes: SCO5136
equation: AKG[c] + TYR[c] <=> 4HPP[c] + GLU[c]
- id: r0212
name: aspartate transaminase
genes: SCO6222
equation: AKG[c] + TYR[c] <=> 4HPP[c] + GLU[c]
- id: r0213
name: histidinol-phosphate transaminase
genes: SCO1859
equation: AKG[c] + TYR[c] <=> 4HPP[c] + GLU[c]
- id: r0214
name: histidinol-phosphate transaminase
genes: SCO2053
equation: AKG[c] + TYR[c] <=> 4HPP[c] + GLU[c]
- id: r0215
name: 4-hydroxyphenylpyruvate dioxygenase
genes: SCO2927
equation: 4HPP[c] + O2[c] => CO2[c] + HOMOGEN[c]
- id: r0216
name: homogentisate 1,2-dioxygenase
genes: SCO1715
equation: HOMOGEN[c] + O2[c] => MACAC[c]
- id: r0217
name: maleylacetoacetate isomerase
equation: MACAC[c] <=> FUACAC[c]
- id: r0218
name: fumarylacetoacetase
genes: SCO4580
equation: FUACAC[c] => ACTAC[c] + FUM[c]
- id: r0219
name: aspartate transaminase
genes: SCO4645
equation: AKG[c] + PHE[c] <=> GLU[c] + PHPYR[c]
- id: r0220
name: aspartate transaminase
genes: SCO4984
equation: AKG[c] + PHE[c] <=> GLU[c] + PHPYR[c]
- id: r0221
name: aspartate transaminase
genes: SCO5136
equation: AKG[c] + PHE[c] <=> GLU[c] + PHPYR[c]
- id: r0222
name: aspartate transaminase
genes: SCO6222
equation: AKG[c] + PHE[c] <=> GLU[c] + PHPYR[c]
- id: r0223
name: histidinol-phosphate transaminase
genes: SCO1859
equation: AKG[c] + PHE[c] <=> GLU[c] + PHPYR[c]
- id: r0224
name: histidinol-phosphate transaminase
genes: SCO2053
equation: AKG[c] + PHE[c] <=> GLU[c] + PHPYR[c]
- id: r0225
name: histidinol-phosphate transaminase
genes: SCO3944
equation: AKG[c] + PHE[c] <=> GLU[c] + PHPYR[c]
- id: r0226
name: phenylpyruvate decarboxylase
equation: PHPYR[c] => CO2[c] + PHAC[c]
- id: r0227
name: phenylacetaldehyde dehydrogenase
genes: SCO1612
equation: NAD[c] + PHAC[c] => NADH[c] + PAC[c]
- id: r0228
name: sulfate adenylyltransferase
genes: SCO6097 and SCO6098
equation: ATP[c] + SLF[c] => APS[c] + PPI[c]
- id: r0229
name: adenylyl-sulfate kinase
genes: SCO6099
equation: APS[c] + ATP[c] => ADP[c] + PAPS[c]
- id: r0230
name: phosphoadenylyl-sulfate reductase (thioredoxin)
genes: SCO6100
equation: APS[c] + RTHIO[c] => AMP[c] + H2SO3[c] + OTHIO[c]
- id: r0231
name: ferredoxin-nitrite reductase
genes: SCO6102
equation: (6) FERO[c] + H2SO3[c] => (6) FERI[c] + H2S[c]
- id: r0232
name: 3',5'-bisphosphate nucleotidase
equation: PAP[c] => AMP[c] + PI[c]
- id: r0233
name: nitrate reductase
genes: SCO0216 and SCO0217 and SCO0218 and SCO0219
equation: MKH2[c] + NO3[c] => (2) H[c] + MK[c] + NO2[c]
- id: r0234
name: nitrate reductase
genes: SCO4947 and SCO4948 and SCO4949 and SCO4950
equation: MKH2[c] + NO3[c] => (2) H[c] + MK[c] + NO2[c]
- id: r0235
name: nitrate reductase
genes: SCO6535 and SCO6534 and SCO6533 and SCO6532
equation: MKH2[c] + NO3[c] => (2) H[c] + MK[c] + NO2[c]
- id: r0236
name: nitrate reductase
genes: SCO2473
equation: MKH2[c] + NO3[c] => (2) H[c] + MK[c] + NO2[c]
- id: r0237
name: nitrite reductase
genes: SCO2486 and SCO2487 and SCO2488
equation: (3) NADH[c] + NO2[c] => (3) NAD[c] + NH3[c]
- id: r0238
name: ferredoxin-nitrite reductase
genes: SCO6102
equation: (6) FERO[c] + NO2[c] => (6) FERI[c] + NH3[c]
- id: r0239
name: glucokinase
genes: SCO2126
equation: ATP[c] + GLC[c] => ADP[c] + G6P[c]
- id: r0240
name: glucokinase
genes: SCO2126
equation: ATP[c] + bDGLC[c] => ADP[c] + bDG6P[c]
- id: r0241
name: glucokinase
genes: SCO6260
equation: ATP[c] + GLC[c] => ADP[c] + G6P[c]
- id: r0242
name: glucokinase
genes: SCO6260
equation: ATP[c] + bDGLC[c] => ADP[c] + bDG6P[c]
- id: r0243
name: glucokinase
genes: SCO1077
equation: ATP[c] + GLC[c] => ADP[c] + G6P[c]
- id: r0244
name: glucokinase
genes: SCO1077
equation: ATP[c] + bDGLC[c] => ADP[c] + bDG6P[c]
- id: r0245
name: polyphosphate-glucose phosphotransferase
genes: SCO5059
equation: GLC[c] + nPOLYP[c] => G6P[c] + n_1POLYP[c]
- id: r0246
name: polyphosphate-glucose phosphotransferase
genes: SCO5059
equation: bDGLC[c] + nPOLYP[c] => bDG6P[c] + n_1POLYP[c]
- id: r0247
name: aldose 1-epimerase
genes: SCO2393
equation: GLC[c] <=> bDGLC[c]
- id: r0248
name: aldose 1-epimerase
genes: SCO2407
equation: GLC[c] <=> bDGLC[c]
- id: r0249
name: glucose-6-phosphate isomerase
genes: SCO1942
equation: G6P[c] <=> bDG6P[c]
- id: r0250
name: glucose-6-phosphate isomerase
genes: SCO1942
equation: G6P[c] <=> F6P[c]
- id: r0251
name: glucose-6-phosphate isomerase
genes: SCO1942
equation: bDG6P[c] <=> F6P[c]
- id: r0252
name: glucose-6-phosphate isomerase
genes: SCO6659
equation: G6P[c] <=> bDG6P[c]
- id: r0253
name: glucose-6-phosphate isomerase
genes: SCO6659
equation: G6P[c] <=> F6P[c]
- id: r0254
name: glucose-6-phosphate isomerase
genes: SCO6659
equation: bDG6P[c] <=> F6P[c]
- id: r0255
name: phosphoglucomutase
genes: SCO7443
equation: G6P[c] <=> G1P[c]
- id: r0256
name: 6-phosphofructokinase
genes: SCO2119
equation: ATP[c] + F6P[c] => ADP[c] + FDP[c]
- id: r0257
name: 6-phosphofructokinase
genes: SCO5426
equation: ATP[c] + F6P[c] => ADP[c] + FDP[c]
- id: r0258
name: 6-phosphofructokinase
genes: SCO1214
equation: ATP[c] + F6P[c] => ADP[c] + FDP[c]
- id: r0259
name: fructose-bisphosphatase
genes: SCO5047
equation: FDP[c] => F6P[c] + PI[c]
- id: r0260
name: fructose-bisphosphate aldolase
genes: SCO3649
equation: FDP[c] <=> DHAP[c] + G3P[c]
- id: r0261
name: triose-phosphate isomerase