BLD/MAINT: Remove poetry and replace with setuptools

Poetry is overkill for a project with very few dependencies.

Author: zoj613

.github/workflows/build-and-test.yml

@@ -5,7 +5,6 @@ on:
     branches: [ main ]
   pull_request:
     branches: [ main ]
-    types: [ labeled ]
 
   workflow_dispatch:
 
@@ -15,8 +14,8 @@ jobs:
 
     strategy:
       matrix:
-        os: [ ubuntu-20.04, macOS-10.15, windows-2019 ]
-        python-version: [ '3.6', '3.7', '3.8', '3.9' ]
+        os: [ ubuntu-20.04, macOS-11, windows-2019 ]
+        python-version: [ '3.8', '3.9', '3.10', '3.11' ]
 
     name: Python version - ${{ matrix.python-version }} - ${{ matrix.os }}
     steps:
@@ -27,32 +26,16 @@ jobs:
         with:
           python-version: ${{ matrix.python-version }}
 
-      - name: Cache/restor poetry lockfile
-        uses: actions/cache@v2
-        with:
-          path: .
-          key: deps-${{ hashFiles('poetry.lock') }}
-          restore-keys: deps-
-
-      - name: Install BLAS on Ubuntu for numpy's build to work on Python3.9 
-        if: ${{matrix.os == 'ubuntu-20.04' && matrix.python-version == '3.9'}}
-        run: |
-          sudo apt-get install -y libopenblas-dev
-
       - name: Install Dependencies
-        env:
-          CFLAG: '-std=c99'
         run: |
           python3 -m pip install --upgrade pip setuptools wheel
-          pip install poetry
-          poetry install
-
+          pip install -r requirements-dev.txt
       - name: Run Pytest, report coverage
         run: |
-          poetry run pytest -v --cov-branch --cov=pyloras tests/ --cov-report=xml
-
+          pip install -e .
+          pytest -v --cov-branch --cov=polyagamma tests/ --cov-report=xml
       - name: Upload coverage to Codecov
-        uses: codecov/codecov-action@v1
+        uses: codecov/codecov-action@v3
         with:
           files: ./coverage.xml
-          fail_ci_if_error: true
+          fail_ci_if_error: false

.github/workflows/release.yml

@@ -14,54 +14,54 @@ jobs:
 
     strategy:
       matrix:
-        os: [ ubuntu-20.04 ]
-        python-version: [ '3.6' ]
+        os: [ ubuntu-20.04, macOS-11, windows-2019 ]
+        python-version: [ '3.8' ]
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - name: Set up Python
         uses: actions/setup-python@v2
         with:
           python-version: ${{ matrix.python-version }}
 
-      - name: Cache/restore poetry lockfile
-        uses: actions/cache@v2
-        with:
-          path: .
-          key: deps-${{ hashFiles('poetry.lock') }}
-          restore-keys: deps-
-
-      - name: Install Dependencies and Cythonize extension
+      - name: Install Dependencies
         run: |
-          python3 -m pip install --upgrade pip setuptools wheel
-          pip install poetry
-          poetry install
+          python3 -m pip install --upgrade pip setuptools wheel cibuildwheel==2.12.3
+          pip install -r requirements-dev.txt
+
+      - name: Build wheels
+        run: cibuildwheel --output-dir wheelhouse --config-file pyproject.toml
 
-      - name: Build wheel and source distribution
-        run: poetry build
+      - name: Build source distribution
+        if: ${{ matrix.os == 'ubuntu-20.04' }}
+        run: |
+          python -m build --sdist
+          mv dist/*.gz wheelhouse
 
       - name: Store the wheelhouse directory
-        uses: actions/upload-artifact@v2
+        uses: actions/upload-artifact@v3
         with:
           name: wheels_and_sdist
-          path: dist
+          path: wheelhouse
           if-no-files-found: error
 
-
   upload_pypi:
     needs: [ build_wheels_and_sdist ]
     runs-on: ubuntu-20.04
+    environment:
+      name: pypi
+      url: https://pypi.org/p/pyloras
+    permissions:
+      id-token: write
     steps:
       - name: Pull built wheels and sdist
-        uses: actions/download-artifact@v2
+        uses: actions/download-artifact@v3
         with:
           name: wheels_and_sdist
           path: dist
 
       - name: Publish to PyPI
-        uses: pypa/gh-action-pypi-publish@v1.4.2
+        uses: pypa/gh-action-pypi-publish@v1.8.5
         with:
-          user: __token__
-          password: ${{ secrets.PYPI_TOKEN }}
           packages_dir: dist

MANIFEST.in

@@ -0,0 +1,4 @@
+prune .github
+prune .gitignore
+prune scripts
+prune tests

Makefile

@@ -0,0 +1,19 @@
+.PHONY: clean install test sdist wheels
+
+clean:
+	rm -Rf build/* dist/* ./pyloras.egg-info **/*__pycache__ __pycache__ .coverage*
+
+dev:
+	pip install -r requirements-dev.txt
+
+sdist:
+	python -m build --sdist
+
+wheel:
+	python -m build --wheel
+
+test:
+	pytest tests/ -vvv
+
+test-cov: clean
+	pytest tests/ -vv --cov-branch --cov=pyloras tests/ --cov-report=html

README.md

@@ -7,15 +7,16 @@
 Localized Random Affine Shadowsampling
 
 This repo provides a python implementation of an imbalanced dataset oversampling
-technique known as Localized Random Affine Shadowsampling (LoRAS). This implementation 
-piggybacks off the package ``imbalanced-learn`` and thus aims to be as compatible
-as possible with it.
+technique known as Localized Random Affine Shadowsampling (LoRAS). It also provides
+implementations of several other over/under-sampling algorithms not yet available in
+the ``imbalanced-learn`` package. These implementations piggybacks off of ``imbalanced-learn``
+and thus aim to be as compatible as possible with it.
 
 
 ## Dependencies
-- `Python >= 3.6`
-- `numpy >= 1.17.0`
-- `imbalanced-learn`
+- `Python >= 3.8`
+- `numpy >= 1.17.3`
+- `imbalanced-learn < 1.0.0`
 
 
 ## Installation
@@ -25,13 +26,11 @@ Using `pip`:
 $ pip install -U pyloras
 ```
 
-Installing from source requires an installation of [poetry][1] and the following shell commands:
+Alternatively, one can install from source with the following shell commands:
 ```shell
 $ git clone https://github.com/zoj613/pyloras.git
 $ cd pyloras/
-$ poetry install
-# add package to python's path
-$ export PYTHONPATH=$PWD:$PYTHONPATH 
+$ pip install .
 ```
 
 ## Usage