0.47.2

What's Changed

• Fix ScalarExpression and TensorExpression to support constants in differentiation and getitem by @david-zwicker in #727

Full Changelog: 0.47.1...0.47.2

0.47.1

What's Changed

• Refine data type annotation in DataFieldBase constructor to specify allowed string literals by @david-zwicker in #725
• Use more precise array types by @david-zwicker in #726

Full Changelog: 0.47.0...0.47.1

0.47.0

What's Changed

• Add docstring to copy method in DataFieldBase class by @david-zwicker in #717
• Enhance adaptive solver functionality and testing by @david-zwicker in #718
• Enhance plotting functionality in FieldCollection with flexible arrangement options and add corresponding tests by @david-zwicker in #720
• Refactor solver comparison example for improved readability and modularity; add flexible arrangement options for FieldCollection plots by @david-zwicker in #721
• Fix typos and improve docstring clarity across multiple files by @david-zwicker in #722
• Improve docstring clarity and add notes on variance behavior for correlation functions by @david-zwicker in #723
• Defined more precise array type by @david-zwicker in #724

Full Changelog: 0.46.0...0.47.0

0.46.0

What's Changed

• Add example for heterogeneous PDE using reaction-diffusion equation by @david-zwicker in #702
• Refactor code to adept to newest mypy (and other small changes) by @david-zwicker in #703
• Allow setting default backend for operators on Cartesian grids by @david-zwicker in #704
• Update backend parameter in Laplace, gradient, divergence, and vector… by @david-zwicker in #705
• Refactor type hints for fields in FieldBase and GridMesh classes by @david-zwicker in #706
• Add is_symmetric method and corresponding tests for Tensor2Field by @david-zwicker in #708
• Enhance ffmpeg import handling with warnings for incorrect package by @david-zwicker in #710
• Allow using the transformation argument in PlotTracker. by @david-zwicker in #712
• Clarify title argument documentation in PlotTracker and LivePlotTracker by @david-zwicker in #713
• Remove multiple deprecated features by @david-zwicker in #714
• Added slice and project methods to FieldCollection by @david-zwicker in #716

Full Changelog: 0.45.0...0.46.0

0.45.0

What's Changed

• Fix documentation for user_funcs parameter in expression classes to clarify usage by @david-zwicker in #676
• Refactor dictionary creation to use dict.fromkeys for improved readability by @david-zwicker in #677
• Add custom error handling for ScipySolver integration failures by @david-zwicker in #679
• Fix t_start retrieval in TrackerBase and add tests for interrupt integration by @david-zwicker in #683
• Refine step calculation in SolverBase and enhance interrupt tests with additional parameters by @david-zwicker in #684
• Update np_irfftn call in make_colored_noise and refine exception handling in test_complex_dtype by @david-zwicker in #685
• Refine atol calculation in Controller and adjust tracker iteration condition for improved accuracy by @david-zwicker in #686
• Update package version retrieval to use importlib.metadata for accuracy by @david-zwicker in #687
• Add type ignore comments for shape property and complex number check by @david-zwicker in #688
• Improved type hints according to latest mypy by @david-zwicker in #689
• Refactor StorageBase constructor to require keyword-only arguments and improve error messages for grid loading and field attribute interpretation. by @david-zwicker in #690
• Enhance documentation for correlation functions in random field generation and deprecate old methods by @david-zwicker in #691
• Update multithreading configuration options in DEFAULT_CONFIG for clarity by @david-zwicker in #692
• Remove unnecessary type ignore comments for clarity in various files by @david-zwicker in #693
• Refactor examples and tests for correlated noise functionality; update documentation links and improve test coverage by @david-zwicker in #694
• Add finite differences example with derivative plots by @david-zwicker in #699
• Add tests for mixed derivatives in Cartesian and cylindrical grids by @david-zwicker in #700

Full Changelog: 0.44.0...0.45.0

0.44.0

This release adds the GeometricInterrupts class to provide logarithmically spaced time interrupts for trackers. We also improved multiple smaller aspects of the package and removed features that have been deprecated for more than a year.

What's Changed

• Rename workflow jobs for clarity and update pip installation command by @david-zwicker in #656
• Refactor code: remove deprecated interval parameter, clean up unused classes, and improve import statements by @david-zwicker in #657
• Enhance test script: add memory tracing with memray, update ignore rules, and clean up imports by @david-zwicker in #658
• Disable multithreading on HPC by default by @david-zwicker in #659
• Refactor boundary condition handling: update test cases and examples to use dictionary format for boundary conditions by @david-zwicker in #660
• Removed a number of deprecated methods by @david-zwicker in #661
• Update test coverage script to append reports and fixed a test by @david-zwicker in #663
• Enhance numba_dict function to accept additional keyword arguments and update documentation; refactor related code for consistency by @david-zwicker in #664
• Update numba_dict function to enforce positional-only parameters and add edge case test by @david-zwicker in #665
• Add new functions to documentation and enhance autosummary in multiple modules by @david-zwicker in #666
• Add GeometricInterrupts class and update documentation for interrupt classes by @david-zwicker in #667
• Add logarithmic kymograph example and enhance GeometricInterrupts parsing with validation by @david-zwicker in #668
• Fix typos and improve clarity in logarithmic kymograph example documentation by @david-zwicker in #669
• Enhance interrupt data handling by allowing integers in InterruptData type and updating parse_interrupt logic; remove unnecessary nbconvert skip in tests by @david-zwicker in #670
• Support Parameterized class from modelrunner in Sphinx documentation processing by @david-zwicker in #671
• Enhance expression parsing by adding complex number support and improving local variable handling in parse_expr_guarded; update tests for constant expressions to include complex cases. by @david-zwicker in #672
• Add pydot to requirements and update ignore rules in linter configuration by @david-zwicker in #673

Full Changelog: 0.43.0...0.44.0

0.43.0

Added support for python 3.13

What's Changed

• Add synonym support for axis names in boundary conditions and update tests by @david-zwicker in #645
• Add return type annotation for FieldCollection constructor by @david-zwicker in #647
• Refactor boundary index handling to improve clarity and support new index formats by @david-zwicker in #648
• Add corner weight parameter for 2D Laplacian and update performance script by @david-zwicker in #649
• Improve input shape validation in GridBase methods and update performance script documentation by @david-zwicker in #650
• Add ffmpeg version retrieval and update environment information by @david-zwicker in #651
• Fixed 9-point stencil in Cartesian coordinates by @david-zwicker in #652
• Update maximal Python version to 3.13 in workflows and configuration files by @david-zwicker in #653

Full Changelog: 0.42.2...0.43.0

0.42.2

What's Changed

• Fix description of heterogeneous BC example by @david-zwicker in #636
• Fix figure retrieval in BasicPlottingContext for root figures by @david-zwicker in #637
• Fix typos in comments and add tests for vector_to_cartesian function by @david-zwicker in #638
• Improve string representations in various files by @david-zwicker in #640
• Update boundary conditions format in PDE tutorial notebook by @david-zwicker in #641
• Update py-modelrunner version to 0.18.3 in requirements files and scripts by @david-zwicker in #642
• Handle special case for identical boundary conditions in get_boundary_axis function and add corresponding test by @david-zwicker in #644

Full Changelog: 0.42.1...0.42.2

0.42.1

This release fixes a number of minor bugs and improves the documentation.

What's Changed

• Improved codestyle and added checks by @david-zwicker in #622
• Added argument post_step_hook to PDE class by @david-zwicker in #623
• Split examples into different categories by @david-zwicker in #625
• Removed pyupgrade since it is contained in ruff by @david-zwicker in #626
• Fix GridBase by @david-zwicker in #628
• Refactored logging by @david-zwicker in #630
• Added config option to affect how operators are implemented by @david-zwicker in #632
• Prevent usage of adaptive steppers with stochastic PDEs by @david-zwicker in #633

Full Changelog: 0.42.0...test

0.42.0

This release changes the way in which boundary conditions should be normally set. In particular, it deprecates the nested list approach, where conditions were set for each side of all axes in a more flexible, dictionary-based approach. In the new approach, conditions are directly specified for entire axes (x) or for one side (x+).

Moreover, we refactored the Boundaries class, introducing a new base class and added the BoundariesSetter class, so ghost points can be set directly using a callback function.

We also cleaned up some code and moved around some classes, so this might break old code!

What's Changed

• Slightly improved documentation by @david-zwicker in #618
• Refactored boundary conditions by @david-zwicker in #619

Full Changelog: 0.41.1...0.42.0