SAMTOOLS_FASTQ_NOGZIP java.nio.channels.OverlappingFileLockException

[BirgitRijvers]

Sometimes an error happens in the SAMTOOLS_FASTQ_NOGZIP process.
Error message:

ERROR ~ Error executing process > 'EMC_METAMICROBES:METAMICROBES:SAMTOOLS_FASTQ_NOGZIP (3)'

Caused by:
  java.nio.channels.OverlappingFileLockException

Samtools fastq is included twice in the main workflow (but with different names), and probably the 2 processes with this tool generate output with the same name. Should be fixable by adding a prefix specific for each process with the tool via modules.config.

To bypass this, just run the workflow again, since it doesn't happen in every run.

[BirgitRijvers]

Should be fixed by commit d6997f6 :)

[BirgitRijvers]

Closing this for now, but opening again if error still occurs.