Update Target Journal #2 with journals from open calls for papers

Co-authored-by: JacobKMcPherson <[email protected]>

Author: Copilot

research/projects.qmd

@@ -59,17 +59,17 @@ Visit our [GitHub Organization](https://github.com/McPhersonLab):
 | [amr-staphylococcus-aureus](https://github.com/mcphersonlab/amr-staphylococcus-aureus) | MRSA resistance mechanisms | IDSA IDWeek; ESCMID Annual | Clinical Infectious Diseases | npj Antimicrobials and Resistance |
 | [amr-klebsiella-pneumoniae](https://github.com/mcphersonlab/amr-klebsiella-pneumoniae) | Carbapenem-resistant *K. pneumoniae* | IDSA IDWeek; ESCMID Annual | Nature Microbiology | npj Antimicrobials and Resistance |
 | [amr-enterococcus-faecium](https://github.com/mcphersonlab/amr-enterococcus-faecium) | VRE genomics and resistance | TMC AMR | Journal of Antimicrobial Chemotherapy | mBio |
-| [amr-candida-auris](https://github.com/mcphersonlab/amr-candida-auris) | Antifungal resistance in *C. auris* | IMARI Annual; MSGERC Biennial | Clinical Infectious Diseases | Journal of Antimicrobial Chemotherapy |
+| [amr-candida-auris](https://github.com/mcphersonlab/amr-candida-auris) | Antifungal resistance in *C. auris* | IMARI Annual; MSGERC Biennial | Clinical Infectious Diseases | BMC Immunology |
 | [amr-acinetobacter-baumannii](https://github.com/mcphersonlab/amr-acinetobacter-baumannii) | Carbapenem-resistant *A. baumannii* | IMARI Annual | Nature Microbiology | npj Antimicrobials and Resistance |
 | [amr-neisseria-gonorrhoeae](https://github.com/mcphersonlab/amr-neisseria-gonorrhoeae) | AMR in *N. gonorrhoeae* | IMARI Annual; CSIRO AMR Summit | The Lancet Infectious Diseases | npj Antimicrobials and Resistance |
 | [amr-aspergillus-fumigatus](https://github.com/mcphersonlab/amr-aspergillus-fumigatus) | Azole resistance in *A. fumigatus* | MSGERC Biennial | Clinical Infectious Diseases | Journal of Antimicrobial Chemotherapy |
 | [amr-lomentospora-prolificans](https://github.com/mcphersonlab/amr-lomentospora-prolificans) | Antifungal resistance in *L. prolificans* | MSGERC Biennial | Clinical Infectious Diseases | Antimicrobial Agents and Chemotherapy |
 | [amr-hiv](https://github.com/mcphersonlab/amr-hiv) | HIV drug resistance | CROI Annual; ASV Annual; ESCV Annual | The Lancet HIV | Nature Microbiology |
 | [amr-mycobacterium-tuberculosis](https://github.com/mcphersonlab/amr-mycobacterium-tuberculosis) | MDR-TB genomics | Global TB Summit (Qiagen) | The Lancet Infectious Diseases | npj Antimicrobials and Resistance |
 | [amr-pseudomonas-aeruginosa](https://github.com/mcphersonlab/amr-pseudomonas-aeruginosa) | Multidrug-resistant *P. aeruginosa* | North American Cystic Fibrosis (CF) Conference | Clinical Infectious Diseases | npj Antimicrobials and Resistance |
-| [amr-env-food](https://github.com/mcphersonlab/amr-env-food) | Antimicrobial resistance in the food chain | CSIRO AMR Summit | Nature Microbiology | Environmental Microbiology |
+| [amr-env-food](https://github.com/mcphersonlab/amr-env-food) | Antimicrobial resistance in the food chain | CSIRO AMR Summit | Nature Microbiology | npj Antimicrobials and Resistance |
 | [amr-env-water](https://github.com/mcphersonlab/amr-env-water) | Antimicrobial resistance in wastewater surveillance | CSIRO AMR Summit | Environmental Science & Technology | Water Research |
-| [tx-cap](https://github.com/mcphersonlab/tx-cap) | Treatment of community-acquired pneumonia | IDSA IDWeek | Clinical Infectious Diseases | The Lancet Infectious Diseases |
+| [tx-cap](https://github.com/mcphersonlab/tx-cap) | Treatment of community-acquired pneumonia | IDSA IDWeek | Clinical Infectious Diseases | Antimicrobial Resistance & Infection Control |
 | [tx-uuti](https://github.com/mcphersonlab/tx-uuti) | Treatment of uncomplicated urinary tract infections | IDSA IDWeek | Clinical Infectious Diseases | Journal of Antimicrobial Chemotherapy |
 | [tx-staph-bacteremia](https://github.com/mcphersonlab/tx-staph-bacteremia) | Treatment of *Staphylococcal bacteremia* | ASHP Midyear | Clinical Infectious Diseases | Journal of Antimicrobial Chemotherapy |
 | [tx-cdi](https://github.com/mcphersonlab/tx-cdi) | Treatment of *C. difficile* infection | 9th International *C. difficile* Symposium (ICDS) | Clinical Infectious Diseases | Gut Microbes |
@@ -79,14 +79,14 @@ Visit our [GitHub Organization](https://github.com/McPhersonLab):
 | [mgx-abx-healthy](https://github.com/mcphersonlab/mgx-abx-healthy) | Antibiotic effects on healthy gut microbiome | BSAC and GARDP Antimicrobial Chemotherapy Conference | Nature Communications | Microbiome |
 | [mgx-immunol-regulatory-t-cells](https://github.com/mcphersonlab/mgx-immunol-regulatory-t-cells) | Microbiome-immune regulatory T cell interactions | AAAS Annual | Nature Immunology | Nature Communications |
 | [mgx-mbx-colorectal-cancer](https://github.com/mcphersonlab/mgx-mbx-colorectal-cancer) | Microbiome and metabolome in colorectal cancer | AAAS Annual | Nature Medicine | Cell Host & Microbe |
-| [mgx-mbx-glp-1](https://github.com/mcphersonlab/mgx-mbx-glp-1) | GLP-1 agonists and gut microbiome interactions | AAAS Annual | Nature Medicine | Gut |
-| [MicrobiomeHUES](https://github.com/mcphersonlab/MicrobiomeHUES) | Hierarchical Unified Ecological Spectrum of the human microbiome | ASM Microbe | Nature Microbiology | Microbiome |
+| [mgx-mbx-glp-1](https://github.com/mcphersonlab/mgx-mbx-glp-1) | GLP-1 agonists and gut microbiome interactions | AAAS Annual | Nature Medicine | npj Biofilms and Microbiomes |
+| [MicrobiomeHUES](https://github.com/mcphersonlab/MicrobiomeHUES) | Hierarchical Unified Ecological Spectrum of the human microbiome | ASM Microbe | Nature Microbiology | BMC Microbiology |
 | [ai-amr](https://github.com/mcphersonlab/ai-amr) | AI methods for antimicrobial resistance prediction | IMARI Annual | Nature Machine Intelligence | npj Antimicrobials and Resistance |
-| [ai-forecast-influenza](https://github.com/mcphersonlab/ai-forecast-influenza) | AI forecasting of influenza dynamics | ASV Annual | The Lancet Infectious Diseases | Nature Communications |
+| [ai-forecast-influenza](https://github.com/mcphersonlab/ai-forecast-influenza) | AI forecasting of influenza dynamics | ASV Annual | The Lancet Infectious Diseases | npj Digital Medicine |
 | [ai-forecast-pharmacology](https://github.com/mcphersonlab/ai-forecast-pharmacology) | AI-driven pharmacological predictions | IUPHAR Annual | Nature Reviews Drug Discovery | Nature Machine Intelligence |
-| [ai-microbiome-transmission](https://github.com/mcphersonlab/ai-microbiome-transmission) | AI modeling of microbiome transmission | ASM Microbe | Nature Microbiology | Nature Communications |
+| [ai-microbiome-transmission](https://github.com/mcphersonlab/ai-microbiome-transmission) | AI modeling of microbiome transmission | ASM Microbe | Nature Microbiology | npj Digital Medicine |
 | [ai-structural-biology](https://github.com/mcphersonlab/ai-structural-biology) | Artificial intelligence methodology in structural biology | Biophysical Society Annual | Nature Methods | Nature Machine Intelligence |
-| [MicroSCOPE](https://github.com/mcphersonlab/MicroSCOPE) | Microbial speciation from colony observation and prediction | ASM Microbe | Nature Microbiology | mBio |
+| [MicroSCOPE](https://github.com/mcphersonlab/MicroSCOPE) | Microbial speciation from colony observation and prediction | ASM Microbe | Nature Microbiology | BMC Microbiology |
 | [biophysics-proteins-as-complex-machines-of-physics](https://github.com/mcphersonlab/biophysics-proteins-as-complex-machines-of-physics) | Biophysical analysis of protein machinery | Biophysical Society Annual | Nature Structural & Molecular Biology | Biophysical Journal |
 | [phys-hiv-lenacapavir](https://github.com/mcphersonlab/phys-hiv-lenacapavir) | Structure and physical properties of HIV-1 capsid hyperstabilization by lenacapavir | CROI Annual | Nature Structural & Molecular Biology | Journal of Virology |
 | [structure-function-pharmacology](https://github.com/mcphersonlab/structure-function-pharmacology) | Structure-function relationships in pharmacology | IUPHAR Annual | Nature Reviews Drug Discovery | Molecular Pharmacology |