Skip to content

Commit 7bdda6a

Browse files
JacobKMcPhersonJacobKMcPherson
authored
Merge pull request #118 from mcphersonlab/copilot/add-new-sub-folder-entries
2 parents 3fc3050 + ee295ae commit 7bdda6a

File tree

42 files changed

+881
-0
lines changed

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

42 files changed

+881
-0
lines changed

‎inspirations/Abramson_Nature_2024/index.qmd‎

Lines changed: 22 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,22 @@
1+
---
2+
title: "Accurate structure prediction of biomolecular interactions with AlphaFold 3"
3+
author:
4+
- Abramson
5+
- Adler
6+
- Dunger
7+
- et al.
8+
publication: "Nature, **630**, 493–500 (2024)"
9+
categories:
10+
- external-publication
11+
- structural-biology
12+
- artificial-intelligence
13+
url_source: https://doi.org/10.1038/s41586-024-07487-w
14+
url_preprint:
15+
journ: "Nature"
16+
issue: 630
17+
page: 493–500
18+
year: 2024
19+
image: ""
20+
pub_number:
21+
doi: 10.1038/s41586-024-07487-w
22+
---

‎inspirations/AntimicrobialResistanceCollaborators_Lancet_2022/index.qmd‎

Lines changed: 18 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,18 @@
1+
---
2+
title: "Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis"
3+
author:
4+
- Antimicrobial Resistance Collaborators
5+
publication: "Lancet, **399**, 629–655 (2022)"
6+
categories:
7+
- external-publication
8+
- antimicrobial-resistance
9+
url_source: https://doi.org/10.1016/S0140-6736(21)02724-0
10+
url_preprint:
11+
journ: "Lancet"
12+
issue: 399
13+
page: 629–655
14+
year: 2022
15+
image: ""
16+
pub_number:
17+
doi: 10.1016/S0140-6736(21)02724-0
18+
---

‎inspirations/Asnicar_NatMed_2021/index.qmd‎

Lines changed: 21 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,21 @@
1+
---
2+
title: "Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals"
3+
author:
4+
- Asnicar
5+
- Berry
6+
- Valdes
7+
- et al.
8+
publication: "Nat Med, **27**, 321–332 (2021)"
9+
categories:
10+
- external-publication
11+
- human-gut-microbiome
12+
url_source: https://doi.org/10.1038/s41591-020-01183-8
13+
url_preprint:
14+
journ: "Nat Med"
15+
issue: 27
16+
page: 321–332
17+
year: 2021
18+
image: ""
19+
pub_number:
20+
doi: 10.1038/s41591-020-01183-8
21+
---

‎inspirations/Asnicar_Nature_2025/index.qmd‎

Lines changed: 21 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,21 @@
1+
---
2+
title: "Gut micro-organisms associated with health, nutrition and dietary interventions"
3+
author:
4+
- Asnicar
5+
- Manghi
6+
- Fackelmann
7+
- et al.
8+
publication: "Nature (2025)"
9+
categories:
10+
- external-publication
11+
- human-gut-microbiome
12+
url_source: https://doi.org/10.1038/s41586-025-09854-7
13+
url_preprint:
14+
journ: "Nature"
15+
issue:
16+
page:
17+
year: 2025
18+
image: ""
19+
pub_number:
20+
doi: 10.1038/s41586-025-09854-7
21+
---

‎inspirations/Boucher_ClinInfectDis_2009/index.qmd‎

Lines changed: 21 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,21 @@
1+
---
2+
title: "Bad bugs, no drugs: no ESKAPE! An update from the Infectious Diseases Society of America"
3+
author:
4+
- Boucher
5+
- Talbot
6+
- Bradley
7+
- et al.
8+
publication: "Clin Infect Dis, **48**, 1–12 (2009)"
9+
categories:
10+
- external-publication
11+
- antimicrobial-resistance
12+
url_source: https://doi.org/10.1086/595011
13+
url_preprint:
14+
journ: "Clin Infect Dis"
15+
issue: 48
16+
page: 1–12
17+
year: 2009
18+
image: ""
19+
pub_number:
20+
doi: 10.1086/595011
21+
---

‎inspirations/Buffie_Nature_2015/index.qmd‎

Lines changed: 21 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,21 @@
1+
---
2+
title: "Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile"
3+
author:
4+
- Buffie
5+
- Bucci
6+
- Stein
7+
- et al.
8+
publication: "Nature, **517**, 205–208 (2015)"
9+
categories:
10+
- external-publication
11+
- human-gut-microbiome
12+
url_source: https://doi.org/10.1038/nature13828
13+
url_preprint:
14+
journ: "Nature"
15+
issue: 517
16+
page: 205–208
17+
year: 2015
18+
image: ""
19+
pub_number:
20+
doi: 10.1038/nature13828
21+
---

‎inspirations/Cao_Nature_2021/index.qmd‎

Lines changed: 22 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,22 @@
1+
---
2+
title: "Structure, function and pharmacology of human itch GPCRs"
3+
author:
4+
- Cao
5+
- Kang
6+
- Singh
7+
- et al.
8+
publication: "Nature, **600**, 170–175 (2021)"
9+
categories:
10+
- external-publication
11+
- structural-biology
12+
- pharmacology
13+
url_source: https://doi.org/10.1038/s41586-021-04126-6
14+
url_preprint:
15+
journ: "Nature"
16+
issue: 600
17+
page: 170–175
18+
year: 2021
19+
image: ""
20+
pub_number:
21+
doi: 10.1038/s41586-021-04126-6
22+
---

‎inspirations/DCosta_Nature_2011/index.qmd‎

Lines changed: 21 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,21 @@
1+
---
2+
title: "Antibiotic resistance is ancient"
3+
author:
4+
- D'Costa
5+
- King
6+
- Kalan
7+
- et al.
8+
publication: "Nature, **477**, 457–461 (2011)"
9+
categories:
10+
- external-publication
11+
- antimicrobial-resistance
12+
url_source: https://doi.org/10.1038/nature10388
13+
url_preprint:
14+
journ: "Nature"
15+
issue: 477
16+
page: 457–461
17+
year: 2011
18+
image: ""
19+
pub_number:
20+
doi: 10.1038/nature10388
21+
---

‎inspirations/Darby_NatRevMicrobiol_2023/index.qmd‎

Lines changed: 21 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,21 @@
1+
---
2+
title: "Molecular mechanisms of antibiotic resistance revisited"
3+
author:
4+
- Darby
5+
- Trampari
6+
- Siasat
7+
- et al.
8+
publication: "Nat Rev Microbiol, **21**, 280–295 (2023)"
9+
categories:
10+
- external-publication
11+
- antimicrobial-resistance
12+
url_source: https://doi.org/10.1038/s41579-022-00820-y
13+
url_preprint:
14+
journ: "Nat Rev Microbiol"
15+
issue: 21
16+
page: 280–295
17+
year: 2023
18+
image: ""
19+
pub_number:
20+
doi: 10.1038/s41579-022-00820-y
21+
---

‎inspirations/Funabashi_Nature_2020/index.qmd‎

Lines changed: 21 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,21 @@
1+
---
2+
title: "A metabolic pathway for bile acid dehydroxylation by the gut microbiome"
3+
author:
4+
- Funabashi
5+
- Grove
6+
- Wang
7+
- et al.
8+
publication: "Nature, **582**, 566–570 (2020)"
9+
categories:
10+
- external-publication
11+
- human-gut-microbiome
12+
url_source: https://doi.org/10.1038/s41586-020-2396-4
13+
url_preprint:
14+
journ: "Nature"
15+
issue: 582
16+
page: 566–570
17+
year: 2020
18+
image: ""
19+
pub_number:
20+
doi: 10.1038/s41586-020-2396-4
21+
---

0 commit comments

Comments
 (0)