changed category of cap to pneumonia

Author: JacobKMcPherson

publications/_template/index.qmd

@@ -7,6 +7,7 @@ author: ["Names in quotes", "Separate by commas"]
 publication: "Journal, **issue**, _page_ (2024)"
 # categories: 
 #- member-publication
+#- external-publication
 #- pharmacy
 #- pharmacology
 #- medicinal-chemistry
@@ -18,7 +19,30 @@ publication: "Journal, **issue**, _page_ (2024)"
 #- classical-methods
 #- infectious-diseases
 #- antimicrobial-resistance
-#- human-gut-microbiome
+
+# categories of infectious-diseases
+#- staph-bacteremia
+#- pneumonia
+#- cdi
+#- uti
+#- ifi
+#- meningitis
+#- osteomyelitis
+#- endocarditis
+
+# categories of microbiome
+#- cdi
+#- crc
+#- ibd
+#- iv-po
+#- duration-therapy
+#- allergy
+
+# categories of antimicrobial-resistance 
+#- amr-target-modification
+#- amr-agent-inactivation
+#- amr-agent-influx-efflux
+#- amr-target-bypass
 url_source: 
 url_preprint: 
 journ: "Journal"
@@ -28,4 +52,13 @@ year: 9999 # year
 image: ""
 pub_number: 
 doi: 
----
+---
+
+<!-- 
+Title: 
+Authors:
+Publication: Journal, **issue**, _page_ (2024)
+Associated Conference Poster/Presentation (if applicable):
+
+Add your publication details above and write an abstract/summary below.
+-->

research/area/infectious-diseases/index.qmd

@@ -25,6 +25,7 @@ listing:
     include: 
       categories: *ALIAS
     fields: [publication, title, categories, image, author]
+
   - id: cdi
     template: ../../../_ejs/publications-people.ejs 
     contents: 
@@ -37,7 +38,7 @@ listing:
       categories: cdi
     fields: [publication, title, categories, image, author]
 
-  - id: cap
+  - id: pneumonia
     template: ../../../_ejs/publications-people.ejs 
     contents: 
       - "!../../../publications/_template/"
@@ -46,7 +47,7 @@ listing:
       #- "../../../inspirations/**/*.qmd"
     sort: "pub_number desc"
     include: 
-      categories: cap
+      categories: pneumonia
     fields: [publication, title, categories, image, author]
 
   - id: staph-bacteremia
@@ -61,7 +62,7 @@ listing:
       categories: staph-bacteremia
     fields: [publication, title, categories, image, author]
 
-  - id: invasive-candidiasis
+  - id: ifi
     template: ../../../_ejs/publications-people.ejs 
     contents: 
       - "!../../../publications/_template/"
@@ -70,7 +71,7 @@ listing:
       #- "../../../inspirations/**/*.qmd"
     sort: "pub_number desc"
     include: 
-      categories: invasive-candidiasis
+      categories: ifi
     fields: [publication, title, categories, image, author]
 
   - id: uti
@@ -141,15 +142,15 @@ listing:
 :::
 
 ### Community-Acquired Pneumonia 🫁
-:::{#cap}
+:::{#pneumonia}
 :::
 
 ### Staph Bacteremia 🩸
 :::{#staph-bacteremia}
 :::
 
 ### Invasive Fungal Infection 🍄
-:::{#invasive-fungal}
+:::{#ifi}
 :::
 
 ### Urinary Tract Infections 🚽