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    71 repositories

    • sophys-live-view

      Public
      Live and offline data visualizer, mainly for Bluesky-based systems
      Python
      •
      GNU Lesser General Public License v3.0
      •0•1•1•0•Updated Mar 13, 2026Mar 13, 2026

    • mxcubeweb-lnls

      Public
      LNLS configuration for MXCuBE Web
      0•0•0•2•Updated Mar 12, 2026Mar 12, 2026

    • mxcubecore

      Public
      Backend used by MXCuBE
      Python
      •
      GNU Lesser General Public License v3.0
      •55•0•0•2•Updated Mar 12, 2026Mar 12, 2026

    • epics-in-docker

      Public
      Container images with EPICS and modules
      Shell
      •3•8•15•17•Updated Mar 12, 2026Mar 12, 2026

    • sophys-web

      Public
      Bluesky http-server client apps developed by the Control Software Group @LNLS/CNPEM.
      TypeScript
      •
      GNU General Public License v3.0
      •3•4•4•1•Updated Mar 12, 2026Mar 12, 2026

    • ssc-cdi

      Public
      Python
      •
      Other
      •1•2•4•0•Updated Mar 12, 2026Mar 12, 2026

    • sophys-common

      Public
      A collection of Bluesky and Ophyd utility code for SIRIUS beamlines and support groups
      kafkablueskyophyd
      kafkablueskyophydsophys
      Python
      •
      GNU Lesser General Public License v3.0
      •3•3•5•5•Updated Mar 12, 2026Mar 12, 2026

    • mxcubeweb

      Public
      MXCuBE-Web
      JavaScript
      •
      GNU Lesser General Public License v3.0
      •43•0•0•0•Updated Mar 12, 2026Mar 12, 2026

    • ad-eiger-epics-ioc

      Public
      EPICS areaDetector IOCs based on ADEiger driver.
      Makefile
      •0•0•0•1•Updated Mar 11, 2026Mar 11, 2026

    • bluesky

      Public
      experiment orchestration and data acquisition
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •112•0•0•0•Updated Mar 10, 2026Mar 10, 2026

    • mbed-mods

      Public
      Mbed OS-based modules providing common functionalities and a standardized way of structuring the firmware.
      C++
      •
      GNU General Public License v3.0
      •1•0•2•1•Updated Mar 5, 2026Mar 5, 2026

    • MarvinDocs

      Public
      Repositório de documentação produzido pelo mdbook para o HPCC Marvin no LNBio/CNPEM
      Creative Commons Attribution 4.0 International
      •2•0•0•0•Updated Mar 4, 2026Mar 4, 2026

    • AtomPacker

      Public
      A python package for packing nanoclusters into supramolecular cages.
      modelingpython-packagenanoparticles
      modelingpython-packagenanoparticlesnanoclusterssupramolecular-cagesatom-packing
      Python
      •
      GNU General Public License v3.0
      •0•2•0•2•Updated Mar 3, 2026Mar 3, 2026

    • mbed-template-fw

      Public
      LNLS Template for Mbed OS–Based Firmwares.
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 2, 2026Mar 2, 2026

    • MAS-lnbio-SCP-ethanol

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Feb 27, 2026Feb 27, 2026

    • molecular_modeling

      Public
      This repository contains scripts used for molecular modeling and molecular simulation.
      MIT License
      •0•0•0•0•Updated Feb 27, 2026Feb 27, 2026

    • hpc-containers

      Public
      Apptainer/Singularity containers for HPC clusters
      singularityapptainer
      singularityapptainer
      Lua
      •1•0•0•1•Updated Feb 19, 2026Feb 19, 2026

    • ADPimega

      Public
      EPICS areaDetector driver for the PiMega detectors
      C++
      •
      Other
      •3•6•12•6•Updated Feb 13, 2026Feb 13, 2026

    • sophys-cli-core

      Public
      Core functionality for the sophys-cli project, a commandline interface for Bluesky orchestration at SIRIUS
      Python
      •
      GNU Lesser General Public License v3.0
      •1•1•2•0•Updated Feb 13, 2026Feb 13, 2026

    • sophys-cli-extensions

      Public
      SIRIUS-specific extensions for the sophys-cli project, dealing with code customized to SIRIUS beamlines
      Python
      •
      GNU General Public License v3.0
      •1•2•0•1•Updated Feb 12, 2026Feb 12, 2026

    • sophys-gui

      Public
      Python
      •
      GNU Lesser General Public License v3.0
      •1•2•1•0•Updated Feb 2, 2026Feb 2, 2026

    • allpix-squared

      Public
      C++
      •
      MIT License
      •27•0•0•0•Updated Feb 2, 2026Feb 2, 2026

    • mbed-tools

      Public
      0•0•0•0•Updated Feb 2, 2026Feb 2, 2026

    • ad-sim-epics-ioc

      Public
      ADSimDetector IOC
      Batchfile
      •1•0•0•0•Updated Jan 30, 2026Jan 30, 2026

    • motorPIGCS2

      Public
      EPICS asyn motor drivers for PI GCS2 controllers
      C++
      •5•0•0•0•Updated Jan 29, 2026Jan 29, 2026

    • ssc-raft

      Public
      Fast tomographic reconstruction
      C
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Jan 28, 2026Jan 28, 2026

    • espem-lnbio-2026

      Public
      ESPEM 2026 - Segmentação de imagens em tempo real com YOLOv8
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 13, 2026Jan 13, 2026

    • annotat3d

      Public
      Annotat3D is a modern web application designed for interactive segmentation of volumetric images.
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 7, 2026Jan 7, 2026

    • harpia

      Public
      HARPIA (High AlgoRithmic Performance for Image Analysis) is a Sirius project for Synchrotron images analysis. HARPIA is dedicated to implement image processing …
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •0•1•0•0•Updated Jan 6, 2026Jan 6, 2026

    • CellViability

      Public
      Cell viability in microscopy images.
      htsscreeningimage-segmentation
      htsscreeningimage-segmentationhcscell-viability
      TeX
      •
      GNU Affero General Public License v3.0
      •0•1•0•0•Updated Dec 18, 2025Dec 18, 2025