Skip to content

Releases: 23andMe/seqseek

MT updates

25 Apr 01:54
773659e
Compare
Choose a tag to compare

rCRS N removal now optional; loop allowed on rCRS/RSRS & synonyms.

Python 3 support

07 Mar 09:51
Compare
Choose a tag to compare

SeqSeek now support Python 2.7+ and Python 3.4+

Convert to rCRS mitochondria, load by accession, circular mito support

28 Oct 22:44
Compare
Choose a tag to compare

The SeqSeek 0.3.0 release adds documentation for undocumented features added in 0.2.x releases.

The main changes are:

  • Chromosome MT now loads the rCRS mitochondrial sequence instead of the outdated RSRS sequence. See the readme for how the inserted N base is handled and removed.
  • Support for loading by accession (e.g. Chromosome('NC_001807.4') if you want the outdated RSRS sequence
  • Support for the circular nature of the mitochondria with the loop keyword argument (e.g. Chromosome('MT', loop=True))
  • Newlines are now removed from FASTA files as a post-processing step of the seqseek downloader instead of in advance by seqseek maintainers.

Add support for build 38, restructure tests

05 Feb 22:33
Compare
Choose a tag to compare
  • Added more support for build 38
  • Restructured test suites
  • Added command line test utilities
  • Updated README.md